HEADER RIBOSOME 04-APR-13 4V9I TITLE Crystal structure of thermus thermophilus 70S in complex with tRNAs TITLE 2 and mRNA containing a pseudouridine in a stop codon COMPND MOL_ID: 53; COMPND 2 MOLECULE: 50S ribosomal protein L31; COMPND 3 CHAIN: B4, D4; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.30 ANGSTORMS DBREF 4V9I D 36 65 UNP Q5SJE1 RL31_THET8 10 39 SEQRES 1 D4 30 VAL PRO ALA ARG ILE ILE CYS GLY CYS GLY ASN VAL ILE SEQRES 2 D4 30 GLU THR TYR SER THR LYS PRO GLU ILE TYR VAL GLU VAL SEQRES 3 D4 30 CYS SER LYS CYS ATOM 1 N VAL D 36 -126.276 160.979 118.615 1.00130.49 ATOM 2 CA VAL D 36 -127.325 161.716 117.825 1.00134.47 ATOM 3 C VAL D 36 -128.335 160.726 117.211 1.00143.59 ATOM 4 O VAL D 36 -127.990 159.561 116.999 1.00149.91 ATOM 5 CB VAL D 36 -126.702 162.623 116.719 1.00126.01 ATOM 6 CG1 VAL D 36 -125.413 163.276 117.214 1.00123.91 ATOM 7 CG2 VAL D 36 -126.456 161.863 115.413 1.00121.29 ATOM 8 N PRO D 37 -129.580 161.182 116.922 1.00141.97 ATOM 9 CA PRO D 37 -130.570 160.261 116.350 1.00133.23 ATOM 10 C PRO D 37 -130.252 159.828 114.915 1.00134.36 ATOM 11 O PRO D 37 -129.850 160.650 114.088 1.00125.19 ATOM 12 CB PRO D 37 -131.877 161.060 116.410 1.00128.80 ATOM 13 CG PRO D 37 -131.455 162.481 116.395 1.00131.83 ATOM 14 CD PRO D 37 -130.153 162.523 117.147 1.00139.06 ATOM 15 N ALA D 38 -130.439 158.537 114.643 1.00140.53 ATOM 16 CA ALA D 38 -130.026 157.920 113.381 1.00138.52 ATOM 17 C ALA D 38 -131.059 156.914 112.885 1.00130.70 ATOM 18 O ALA D 38 -131.844 156.375 113.659 1.00128.75 ATOM 19 CB ALA D 38 -128.679 157.233 113.558 1.00140.81 ATOM 20 N ARG D 39 -131.046 156.664 111.584 1.00129.77 ATOM 21 CA ARG D 39 -131.944 155.687 110.988 1.00140.70 ATOM 22 C ARG D 39 -131.102 154.609 110.312 1.00149.59 ATOM 23 O ARG D 39 -130.144 154.921 109.607 1.00148.33 ATOM 24 CB ARG D 39 -132.880 156.370 109.988 1.00140.45 ATOM 25 CG ARG D 39 -133.414 157.717 110.465 1.00137.84 ATOM 26 CD ARG D 39 -134.617 158.165 109.649 1.00134.76 ATOM 27 NE ARG D 39 -135.834 157.447 110.030 1.00134.61 ATOM 28 CZ ARG D 39 -136.570 157.707 111.112 1.00129.07 ATOM 29 NH1 ARG D 39 -136.228 158.676 111.957 1.00126.45 ATOM 30 NH2 ARG D 39 -137.659 156.987 111.358 1.00121.58 ATOM 31 N ILE D 40 -131.445 153.343 110.556 1.00158.61 ATOM 32 CA ILE D 40 -130.715 152.197 109.997 1.00152.59 ATOM 33 C ILE D 40 -131.628 151.479 109.003 1.00150.26 ATOM 34 O ILE D 40 -132.742 151.090 109.347 1.00148.01 ATOM 35 CB ILE D 40 -130.261 151.212 111.105 1.00147.44 ATOM 36 CG1 ILE D 40 -129.218 151.864 112.024 1.00141.66 ATOM 37 CG2 ILE D 40 -129.681 149.943 110.501 1.00148.64 ATOM 38 CD1 ILE D 40 -129.807 152.688 113.148 1.00142.90 ATOM 39 N ILE D 41 -131.150 151.304 107.774 1.00147.37 ATOM 40 CA ILE D 41 -131.966 150.736 106.705 1.00150.63 ATOM 41 C ILE D 41 -131.478 149.345 106.380 1.00151.15 ATOM 42 O ILE D 41 -130.306 149.166 106.060 1.00166.63 ATOM 43 CB ILE D 41 -131.887 151.595 105.425 1.00152.77 ATOM 44 CG1 ILE D 41 -132.235 153.051 105.747 1.00156.90 ATOM 45 CG2 ILE D 41 -132.801 151.047 104.330 1.00146.88 ATOM 46 CD1 ILE D 41 -133.577 153.238 106.427 1.00159.99 ATOM 47 N CYS D 42 -132.376 148.368 106.454 1.00140.94 ATOM 48 CA CYS D 42 -132.035 146.996 106.108 1.00140.82 ATOM 49 C CYS D 42 -132.402 146.706 104.660 1.00141.71 ATOM 50 O CYS D 42 -133.345 147.289 104.116 1.00138.42 ATOM 51 CB CYS D 42 -132.753 146.019 107.034 1.00137.38 ATOM 52 SG CYS D 42 -132.760 146.559 108.757 1.00141.27 ATOM 53 N GLY D 43 -131.636 145.809 104.043 1.00143.69 ATOM 54 CA GLY D 43 -131.972 145.257 102.737 1.00143.67 ATOM 55 C GLY D 43 -132.990 144.135 102.858 1.00143.26 ATOM 56 O GLY D 43 -133.333 143.498 101.854 1.00142.75 ATOM 57 N CYS D 44 -133.443 143.873 104.090 1.00136.22 ATOM 58 CA CYS D 44 -134.631 143.053 104.339 1.00127.44 ATOM 59 C CYS D 44 -135.835 143.931 104.737 1.00123.12 ATOM 60 O CYS D 44 -136.656 143.542 105.573 1.00113.45 ATOM 61 CB CYS D 44 -134.331 141.982 105.399 1.00119.30 ATOM 62 SG CYS D 44 -133.607 142.581 106.945 1.00110.59 ATOM 63 N GLY D 45 -135.933 145.111 104.120 1.00122.48 ATOM 64 CA GLY D 45 -137.035 146.039 104.354 1.00123.48 ATOM 65 C GLY D 45 -136.878 146.829 105.639 1.00132.43 ATOM 66 O GLY D 45 -136.663 148.042 105.604 1.00133.72 ATOM 67 N ASN D 46 -136.985 146.122 106.767 1.00140.50 ATOM 68 CA ASN D 46 -136.933 146.688 108.131 1.00145.63 ATOM 69 C ASN D 46 -136.056 147.947 108.315 1.00161.85 ATOM 70 O ASN D 46 -134.944 148.032 107.783 1.00173.34 ATOM 71 CB ASN D 46 -136.488 145.583 109.112 1.00135.49 ATOM 72 CG ASN D 46 -136.501 146.028 110.566 1.00125.60 ATOM 73 OD1 ASN D 46 -135.541 145.792 111.301 1.00116.30 ATOM 74 ND2 ASN D 46 -137.588 146.663 110.990 1.00120.96 ATOM 75 N VAL D 47 -136.583 148.923 109.057 1.00166.49 ATOM 76 CA VAL D 47 -135.836 150.130 109.428 1.00163.46 ATOM 77 C VAL D 47 -135.887 150.286 110.941 1.00155.79 ATOM 78 O VAL D 47 -136.969 150.313 111.536 1.00146.43 ATOM 79 CB VAL D 47 -136.402 151.404 108.759 1.00168.12 ATOM 80 CG1 VAL D 47 -135.706 152.663 109.284 1.00162.80 ATOM 81 CG2 VAL D 47 -136.271 151.305 107.245 1.00171.73 ATOM 82 N ILE D 48 -134.711 150.389 111.551 1.00154.74 ATOM 83 CA ILE D 48 -134.598 150.564 112.991 1.00154.33 ATOM 84 C ILE D 48 -134.095 151.981 113.255 1.00160.61 ATOM 85 O ILE D 48 -133.136 152.434 112.625 1.00171.10 ATOM 86 CB ILE D 48 -133.623 149.556 113.641 1.00145.07 ATOM 87 CG1 ILE D 48 -133.625 148.206 112.901 1.00139.72 ATOM 88 CG2 ILE D 48 -133.964 149.382 115.115 1.00140.54 ATOM 89 CD1 ILE D 48 -132.506 148.048 111.888 1.00138.85 ATOM 90 N GLU D 49 -134.748 152.684 114.172 1.00155.16 ATOM 91 CA GLU D 49 -134.315 154.018 114.532 1.00151.17 ATOM 92 C GLU D 49 -133.664 153.985 115.895 1.00151.63 ATOM 93 O GLU D 49 -134.323 154.168 116.918 1.00147.72 ATOM 94 CB GLU D 49 -135.477 154.996 114.541 1.00156.92 ATOM 95 CG GLU D 49 -135.017 156.439 114.664 1.00163.93 ATOM 96 CD GLU D 49 -135.943 157.286 115.506 1.00173.16 ATOM 97 OE1 GLU D 49 -137.168 157.045 115.485 1.00188.22 ATOM 98 OE2 GLU D 49 -135.438 158.198 116.191 1.00178.10 ATOM 99 N THR D 50 -132.361 153.740 115.894 1.00159.93 ATOM 100 CA THR D 50 -131.549 153.887 117.091 1.00168.60 ATOM 101 C THR D 50 -130.931 155.283 117.038 1.00167.08 ATOM 102 O THR D 50 -131.434 156.155 116.327 1.00176.79 ATOM 103 CB THR D 50 -130.459 152.802 117.178 1.00175.58 ATOM 104 OG1 THR D 50 -129.392 153.106 116.267 1.00183.71 ATOM 105 CG2 THR D 50 -131.043 151.431 116.857 1.00177.41 ATOM 106 N TYR D 51 -129.857 155.500 117.793 1.00155.35 ATOM 107 CA TYR D 51 -129.228 156.814 117.870 1.00144.54 ATOM 108 C TYR D 51 -127.726 156.627 117.998 1.00136.45 ATOM 109 O TYR D 51 -127.245 156.040 118.966 1.00125.84 ATOM 110 CB TYR D 51 -129.813 157.599 119.041 1.00143.88 ATOM 111 CG TYR D 51 -131.274 157.272 119.251 1.00145.43 ATOM 112 CD1 TYR D 51 -131.656 156.255 120.121 1.00147.12 ATOM 113 CD2 TYR D 51 -132.271 157.930 118.535 1.00143.84 ATOM 114 CE1 TYR D 51 -132.988 155.927 120.300 1.00146.01 ATOM 115 CE2 TYR D 51 -133.604 157.606 118.705 1.00144.01 ATOM 116 CZ TYR D 51 -133.956 156.607 119.590 1.00146.25 ATOM 117 OH TYR D 51 -135.276 156.282 119.771 1.00149.17 ATOM 118 N SER D 52 -127.006 157.135 117.002 1.00131.66 ATOM 119 CA SER D 52 -125.621 156.766 116.765 1.00130.29 ATOM 120 C SER D 52 -124.862 157.995 116.295 1.00134.38 ATOM 121 O SER D 52 -125.101 159.091 116.798 1.00132.85 ATOM 122 CB SER D 52 -125.574 155.648 115.708 1.00128.48 ATOM 123 OG SER D 52 -125.930 156.122 114.415 1.00117.45 ATOM 124 N THR D 53 -123.913 157.796 115.378 1.00147.62 ATOM 125 CA THR D 53 -123.400 158.868 114.526 1.00148.57 ATOM 126 C THR D 53 -123.994 158.665 113.124 1.00156.70 ATOM 127 O THR D 53 -124.336 157.542 112.738 1.00156.13 ATOM 128 CB THR D 53 -121.842 158.932 114.485 1.00133.85 ATOM 129 OG1 THR D 53 -121.279 157.620 114.353 1.00122.66 ATOM 130 CG2 THR D 53 -121.298 159.574 115.755 1.00128.99 ATOM 131 N LYS D 54 -124.143 159.772 112.400 1.00160.40 ATOM 132 CA LYS D 54 -124.648 159.812 111.018 1.00157.30 ATOM 133 C LYS D 54 -125.862 158.916 110.704 1.00154.93 ATOM 134 O LYS D 54 -125.777 157.690 110.802 1.00151.37 ATOM 135 CB LYS D 54 -123.506 159.607 109.997 1.00155.96 ATOM 136 CG LYS D 54 -122.842 158.236 109.924 1.00149.59 ATOM 137 CD LYS D 54 -121.660 158.291 108.957 1.00141.94 ATOM 138 CE LYS D 54 -121.519 157.032 108.119 1.00132.50 ATOM 139 NZ LYS D 54 -120.726 157.307 106.890 1.00126.30 ATOM 140 N PRO D 55 -127.004 159.537 110.338 1.00156.33 ATOM 141 CA PRO D 55 -128.194 158.812 109.860 1.00164.11 ATOM 142 C PRO D 55 -128.083 157.948 108.564 1.00174.40 ATOM 143 O PRO D 55 -128.867 157.009 108.424 1.00180.53 ATOM 144 CB PRO D 55 -129.225 159.933 109.669 1.00153.05 ATOM 145 CG PRO D 55 -128.841 160.959 110.668 1.00146.80 ATOM 146 CD PRO D 55 -127.342 160.922 110.726 1.00149.63 ATOM 147 N GLU D 56 -127.161 158.241 107.637 1.00176.58 ATOM 148 CA GLU D 56 -127.038 157.442 106.378 1.00170.85 ATOM 149 C GLU D 56 -126.309 156.098 106.588 1.00172.25 ATOM 150 O GLU D 56 -125.095 156.068 106.827 1.00172.69 ATOM 151 CB GLU D 56 -126.348 158.234 105.243 1.00164.57 ATOM 152 CG GLU D 56 -127.264 158.625 104.074 1.00152.78 ATOM 153 CD GLU D 56 -126.699 158.271 102.684 1.00139.29 ATOM 154 OE1 GLU D 56 -125.481 157.994 102.535 1.00129.34 ATOM 155 OE2 GLU D 56 -127.492 158.275 101.719 1.00122.02 ATOM 156 N ILE D 57 -127.058 154.996 106.458 1.00169.07 ATOM 157 CA ILE D 57 -126.610 153.662 106.892 1.00159.46 ATOM 158 C ILE D 57 -127.025 152.540 105.900 1.00153.73 ATOM 159 O ILE D 57 -128.209 152.214 105.782 1.00147.91 ATOM 160 CB ILE D 57 -127.157 153.374 108.328 1.00153.47 ATOM 161 CG1 ILE D 57 -126.488 154.285 109.380 1.00146.21 ATOM 162 CG2 ILE D 57 -126.999 151.913 108.722 1.00153.89 ATOM 163 CD1 ILE D 57 -124.987 154.117 109.540 1.00142.28 ATOM 164 N TYR D 58 -126.037 151.941 105.222 1.00145.97 ATOM 165 CA TYR D 58 -126.262 150.840 104.266 1.00139.96 ATOM 166 C TYR D 58 -126.185 149.495 105.015 1.00142.26 ATOM 167 O TYR D 58 -125.075 148.989 105.197 1.00137.14 ATOM 168 CB TYR D 58 -125.156 150.734 103.183 1.00136.45 ATOM 169 CG TYR D 58 -124.636 151.955 102.423 1.00142.05 ATOM 170 CD1 TYR D 58 -124.175 151.805 101.106 1.00141.23 ATOM 171 CD2 TYR D 58 -124.525 153.225 103.008 1.00146.02 ATOM 172 CE1 TYR D 58 -123.661 152.878 100.385 1.00142.58 ATOM 173 CE2 TYR D 58 -124.013 154.306 102.292 1.00147.98 ATOM 174 CZ TYR D 58 -123.582 154.133 100.982 1.00144.11 ATOM 175 OH TYR D 58 -123.077 155.209 100.276 1.00124.36 ATOM 176 N VAL D 59 -127.310 148.900 105.434 1.00145.71 ATOM 177 CA VAL D 59 -127.272 147.553 106.076 1.00144.19 ATOM 178 C VAL D 59 -127.756 146.426 105.149 1.00153.50 ATOM 179 O VAL D 59 -128.847 146.500 104.580 1.00165.72 ATOM 180 CB VAL D 59 -128.076 147.486 107.405 1.00132.48 ATOM 181 CG1 VAL D 59 -128.112 146.063 107.955 1.00129.31 ATOM 182 CG2 VAL D 59 -127.477 148.421 108.438 1.00130.28 ATOM 183 N GLU D 60 -126.936 145.383 105.011 1.00156.08 ATOM 184 CA GLU D 60 -127.350 144.158 104.335 1.00153.92 ATOM 185 C GLU D 60 -127.946 143.230 105.385 1.00159.36 ATOM 186 O GLU D 60 -127.228 142.438 105.995 1.00158.77 ATOM 187 CB GLU D 60 -126.175 143.463 103.636 1.00151.53 ATOM 188 CG GLU D 60 -125.442 144.309 102.604 1.00153.15 ATOM 189 CD GLU D 60 -124.289 145.109 103.190 1.00159.69 ATOM 190 OE1 GLU D 60 -123.745 144.705 104.238 1.00166.76 ATOM 191 OE2 GLU D 60 -123.913 146.142 102.596 1.00167.34 ATOM 192 N VAL D 61 -129.251 143.366 105.615 1.00166.11 ATOM 193 CA VAL D 61 -130.018 142.496 106.522 1.00171.14 ATOM 194 C VAL D 61 -129.761 142.753 108.025 1.00158.20 ATOM 195 O VAL D 61 -128.618 142.908 108.464 1.00138.15 ATOM 196 CB VAL D 61 -129.838 140.991 106.157 1.00185.08 ATOM 197 CG1 VAL D 61 -130.145 140.074 107.335 1.00189.49 ATOM 198 CG2 VAL D 61 -130.705 140.629 104.956 1.00186.79 ATOM 199 N CYS D 62 -130.857 142.790 108.791 1.00152.03 ATOM 200 CA CYS D 62 -130.840 142.982 110.247 1.00143.21 ATOM 201 C CYS D 62 -131.070 141.645 110.956 1.00142.23 ATOM 202 O CYS D 62 -131.089 140.595 110.310 1.00146.63 ATOM 203 CB CYS D 62 -131.940 143.971 110.649 1.00138.20 ATOM 204 SG CYS D 62 -133.611 143.451 110.171 1.00126.90 ATOM 205 N SER D 63 -131.253 141.686 112.280 1.00138.66 ATOM 206 CA SER D 63 -131.612 140.497 113.063 1.00131.31 ATOM 207 C SER D 63 -133.090 140.168 112.889 1.00128.51 ATOM 208 O SER D 63 -133.861 140.152 113.850 1.00119.73 ATOM 209 CB SER D 63 -131.305 140.711 114.541 1.00130.49 ATOM 210 OG SER D 63 -132.146 141.714 115.082 1.00130.49 ATOM 211 N LYS D 64 -133.469 139.922 111.640 1.00134.11 ATOM 212 CA LYS D 64 -134.822 139.539 111.285 1.00126.51 ATOM 213 C LYS D 64 -134.764 138.782 109.947 1.00132.24 ATOM 214 O LYS D 64 -135.582 139.017 109.058 1.00132.36 ATOM 215 CB LYS D 64 -135.690 140.794 111.196 1.00116.03 ATOM 216 CG LYS D 64 -136.863 140.787 112.152 1.00109.68 ATOM 217 CD LYS D 64 -137.377 142.197 112.338 1.00111.40 ATOM 218 CE LYS D 64 -138.147 142.339 113.632 1.00111.42 ATOM 219 NZ LYS D 64 -138.628 143.739 113.782 1.00114.35 ATOM 220 N CYS D 65 -133.780 137.878 109.826 1.00135.98 ATOM 221 CA CYS D 65 -133.536 137.078 108.609 1.00131.22 ATOM 222 C CYS D 65 -132.755 135.780 108.896 1.00130.46 ATOM 223 O CYS D 65 -131.873 135.369 108.136 1.00118.84 ATOM 224 CB CYS D 65 -132.757 137.898 107.581 1.00130.19 ATOM 225 SG CYS D 65 -133.485 139.497 107.161 1.00127.75 ATOM 226 OXT CYS D 65 -132.969 135.089 109.893 1.00143.24 TER