HEADER transferase/protein binding 09-OCT-14 4WMI TITLE Crystal structure of mouse Xyloside xylosyltransferase 1 complexed TITLE 2 with manganese, product ligand and UDP (Product complex I) COMPND MOL_ID: 2; COMPND 2 MOLECULE: Coagulation factor IX; COMPND 3 CHAIN: D; COMPND 4 EC: 3.4.21.22; COMPND 5 FRAGMENT: unp residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.87 ANGSTORMS DBREF 4WMI D 46 84 UNP P00740 FA9_HUMAN 92 130 SEQRES 1 D 35 GLN CYS GLU SER ASN PRO CYS LEU ASN GLY GLY SER CYS SEQRES 2 D 35 LYS ASP ASP ILE ASN SER TYR GLU CYS TRP CYS PRO PHE SEQRES 3 D 35 GLY PHE GLU GLY LYS ASN CYS GLU LEU ATOM 1 N GLN D 50 15.858 7.143 10.531 1.00 49.34 ATOM 2 CA GLN D 50 17.205 7.379 9.925 1.00 49.06 ATOM 3 C GLN D 50 18.290 6.617 10.693 1.00 48.59 ATOM 4 O GLN D 50 18.027 6.061 11.764 1.00 54.37 ATOM 5 CB GLN D 50 17.524 8.879 9.891 1.00 48.81 ATOM 6 N CYS D 51 19.502 6.592 10.144 1.00 43.47 ATOM 7 CA CYS D 51 20.646 5.968 10.810 1.00 39.92 ATOM 8 C CYS D 51 21.652 7.021 11.257 1.00 38.01 ATOM 9 O CYS D 51 21.600 8.165 10.808 1.00 39.12 ATOM 10 CB CYS D 51 21.326 4.983 9.861 1.00 37.93 ATOM 11 SG CYS D 51 22.227 5.738 8.469 1.00 34.29 ATOM 12 N GLU D 52 22.580 6.636 12.126 1.00 36.47 ATOM 13 CA GLU D 52 23.711 7.505 12.429 1.00 33.74 ATOM 14 C GLU D 52 24.760 7.324 11.327 1.00 31.04 ATOM 15 O GLU D 52 25.023 6.201 10.916 1.00 26.89 ATOM 16 CB GLU D 52 24.290 7.188 13.809 1.00 36.96 ATOM 17 CG GLU D 52 25.610 7.890 14.114 1.00 41.50 ATOM 18 CD GLU D 52 25.639 8.547 15.486 1.00 44.96 ATOM 19 OE1 GLU D 52 26.747 8.732 16.030 1.00 45.97 ATOM 20 OE2 GLU D 52 24.556 8.891 16.016 1.00 49.83 ATOM 21 N SER D 53 25.354 8.421 10.859 1.00 26.88 ATOM 22 CA SER D 53 26.375 8.331 9.809 1.00 25.42 ATOM 23 C SER D 53 27.504 7.455 10.232 1.00 24.73 ATOM 24 O SER D 53 27.960 7.524 11.379 1.00 26.60 ATOM 25 CB SER D 53 27.012 9.675 9.545 1.00 24.10 ATOM 26 OG SER D 53 26.099 10.529 8.924 1.00 22.54 ATOM 27 N ASN D 54 27.982 6.679 9.275 1.00 24.86 ATOM 28 CA ASN D 54 29.141 5.847 9.470 1.00 24.23 ATOM 29 C ASN D 54 30.364 6.748 9.614 1.00 25.68 ATOM 30 O ASN D 54 30.691 7.510 8.683 1.00 25.59 ATOM 31 CB ASN D 54 29.306 4.922 8.284 1.00 24.14 ATOM 32 CG ASN D 54 30.297 3.801 8.548 1.00 22.38 ATOM 33 OD1 ASN D 54 30.988 3.777 9.571 1.00 21.72 ATOM 34 ND2 ASN D 54 30.361 2.855 7.619 1.00 22.74 ATOM 35 N PRO D 55 31.030 6.691 10.781 1.00 24.98 ATOM 36 CA PRO D 55 32.223 7.525 10.947 1.00 25.18 ATOM 37 C PRO D 55 33.387 7.022 10.101 1.00 25.47 ATOM 38 O PRO D 55 34.319 7.788 9.849 1.00 25.67 ATOM 39 CB PRO D 55 32.540 7.404 12.443 1.00 26.02 ATOM 40 CG PRO D 55 31.967 6.081 12.843 1.00 27.68 ATOM 41 CD PRO D 55 30.766 5.849 11.968 1.00 25.29 ATOM 42 N CYS D 56 33.306 5.754 9.676 1.00 25.00 ATOM 43 CA CYS D 56 34.296 5.108 8.812 1.00 27.98 ATOM 44 C CYS D 56 34.196 5.580 7.365 1.00 27.77 ATOM 45 O CYS D 56 33.102 5.883 6.860 1.00 24.84 ATOM 46 CB CYS D 56 34.173 3.579 8.854 1.00 29.09 ATOM 47 SG CYS D 56 33.900 2.838 10.489 1.00 33.58 ATOM 48 N LEU D 57 35.348 5.632 6.702 1.00 26.21 ATOM 49 CA LEU D 57 35.437 6.101 5.320 1.00 26.06 ATOM 50 C LEU D 57 34.980 5.065 4.309 1.00 26.80 ATOM 51 O LEU D 57 34.596 5.409 3.192 1.00 25.99 ATOM 52 CB LEU D 57 36.871 6.553 5.002 1.00 26.79 ATOM 53 CG LEU D 57 37.340 7.772 5.802 1.00 28.51 ATOM 54 CD1 LEU D 57 38.863 7.853 5.794 1.00 30.12 ATOM 55 CD2 LEU D 57 36.740 9.059 5.249 1.00 27.58 ATOM 56 N ASN D 58 35.010 3.799 4.722 1.00 28.06 ATOM 57 CA ASN D 58 34.630 2.671 3.885 1.00 28.64 ATOM 58 C ASN D 58 33.223 2.150 4.196 1.00 29.65 ATOM 59 O ASN D 58 32.660 2.419 5.267 1.00 28.58 ATOM 60 CB ASN D 58 35.647 1.525 4.050 1.00 29.80 ATOM 61 CG ASN D 58 35.729 1.011 5.482 1.00 29.07 ATOM 62 OD1 ASN D 58 35.912 1.778 6.434 1.00 29.54 ATOM 63 ND2 ASN D 58 35.600 -0.298 5.642 1.00 30.20 ATOM 64 N GLY D 59 32.669 1.402 3.250 1.00 30.46 ATOM 65 CA GLY D 59 31.393 0.723 3.447 1.00 31.56 ATOM 66 C GLY D 59 30.189 1.626 3.283 1.00 30.47 ATOM 67 O GLY D 59 30.264 2.690 2.649 1.00 30.85 ATOM 68 N GLY D 60 29.061 1.181 3.836 1.00 30.73 ATOM 69 CA GLY D 60 27.798 1.918 3.733 1.00 28.84 ATOM 70 C GLY D 60 27.825 3.240 4.465 1.00 28.03 ATOM 71 O GLY D 60 28.771 3.534 5.206 1.00 28.08 ATOM 72 N SER D 61 26.771 4.030 4.273 1.00 27.51 ATOM 73 CA SER D 61 26.697 5.363 4.853 1.00 28.34 ATOM 74 C SER D 61 26.261 5.336 6.309 1.00 26.03 ATOM 75 O SER D 61 26.370 6.349 6.995 1.00 24.75 ATOM 76 CB SER D 61 25.729 6.246 4.056 1.00 28.91 ATOM 77 OG SER D 61 24.434 5.670 4.032 1.00 29.28 ATOM 78 N CYS D 62 25.749 4.189 6.760 1.00 28.17 ATOM 79 CA CYS D 62 25.262 4.026 8.131 1.00 29.30 ATOM 80 C CYS D 62 26.259 3.312 9.030 1.00 29.51 ATOM 81 O CYS D 62 26.903 2.354 8.624 1.00 29.40 ATOM 82 CB CYS D 62 23.936 3.264 8.150 1.00 31.89 ATOM 83 SG CYS D 62 22.599 4.138 7.294 1.00 35.97 ATOM 84 N LYS D 63 26.352 3.773 10.266 1.00 29.62 ATOM 85 CA LYS D 63 27.268 3.184 11.244 1.00 32.54 ATOM 86 C LYS D 63 26.914 1.709 11.453 1.00 33.77 ATOM 87 O LYS D 63 25.746 1.327 11.333 1.00 31.20 ATOM 88 CB LYS D 63 27.213 4.002 12.542 1.00 36.55 ATOM 89 CG LYS D 63 27.786 3.377 13.810 1.00 39.97 ATOM 90 CD LYS D 63 27.882 4.453 14.891 1.00 43.90 ATOM 91 CE LYS D 63 27.094 4.100 16.149 1.00 47.94 ATOM 92 NZ LYS D 63 27.891 3.369 17.178 1.00 48.57 ATOM 93 N ASP D 64 27.931 0.885 11.697 1.00 33.38 ATOM 94 CA ASP D 64 27.738 -0.561 11.916 1.00 38.57 ATOM 95 C ASP D 64 27.070 -1.215 10.700 1.00 40.32 ATOM 96 O ASP D 64 26.101 -1.973 10.820 1.00 41.73 ATOM 97 CB ASP D 64 26.948 -0.836 13.209 1.00 40.42 ATOM 98 CG ASP D 64 27.612 -0.244 14.440 1.00 42.84 ATOM 99 OD1 ASP D 64 28.846 -0.406 14.610 1.00 45.23 ATOM 100 OD2 ASP D 64 26.897 0.385 15.242 1.00 44.92 ATOM 101 N ASP D 65 27.597 -0.875 9.526 1.00 41.20 ATOM 102 CA ASP D 65 27.224 -1.485 8.261 1.00 41.57 ATOM 103 C ASP D 65 27.457 -2.993 8.354 1.00 40.78 ATOM 104 O ASP D 65 28.577 -3.434 8.632 1.00 40.40 ATOM 105 CB ASP D 65 28.071 -0.855 7.144 1.00 41.39 ATOM 106 CG ASP D 65 28.018 -1.632 5.828 1.00 45.03 ATOM 107 OD1 ASP D 65 29.012 -1.548 5.068 1.00 45.68 ATOM 108 OD2 ASP D 65 27.007 -2.316 5.540 1.00 43.67 ATOM 109 N ILE D 66 26.402 -3.775 8.130 1.00 39.10 ATOM 110 CA ILE D 66 26.492 -5.237 8.247 1.00 38.31 ATOM 111 C ILE D 66 27.521 -5.865 7.292 1.00 37.13 ATOM 112 O ILE D 66 28.065 -6.938 7.569 1.00 37.15 ATOM 113 CB ILE D 66 25.101 -5.918 8.075 1.00 39.44 ATOM 114 CG1 ILE D 66 25.110 -7.358 8.623 1.00 40.16 ATOM 115 CG2 ILE D 66 24.616 -5.861 6.627 1.00 39.52 ATOM 116 CD1 ILE D 66 25.175 -7.450 10.137 1.00 38.19 ATOM 117 N ASN D 67 27.776 -5.201 6.168 1.00 35.60 ATOM 118 CA ASN D 67 28.634 -5.769 5.135 1.00 34.59 ATOM 119 C ASN D 67 30.094 -5.302 5.204 1.00 36.23 ATOM 120 O ASN D 67 30.894 -5.643 4.333 1.00 37.12 ATOM 121 CB ASN D 67 28.016 -5.547 3.744 1.00 33.77 ATOM 122 CG ASN D 67 26.846 -6.491 3.478 1.00 31.46 ATOM 123 OD1 ASN D 67 26.857 -7.643 3.925 1.00 28.77 ATOM 124 ND2 ASN D 67 25.833 -6.007 2.759 1.00 30.79 ATOM 125 N SER D 68 30.421 -4.550 6.257 1.00 37.91 ATOM 126 CA SER D 68 31.789 -4.067 6.517 1.00 40.83 ATOM 127 C SER D 68 32.437 -4.746 7.721 1.00 42.09 ATOM 128 O SER D 68 31.771 -5.037 8.715 1.00 42.43 ATOM 129 CB SER D 68 31.797 -2.559 6.740 1.00 39.62 ATOM 130 OG SER D 68 31.538 -1.885 5.526 1.00 42.87 ATOM 131 N TYR D 69 33.745 -4.971 7.625 1.00 46.37 ATOM 132 CA TYR D 69 34.506 -5.646 8.681 1.00 48.53 ATOM 133 C TYR D 69 35.751 -4.842 9.068 1.00 47.64 ATOM 134 O TYR D 69 36.315 -5.026 10.148 1.00 49.16 ATOM 135 CB TYR D 69 34.858 -7.073 8.240 1.00 54.03 ATOM 136 CG TYR D 69 33.630 -7.872 7.833 1.00 58.86 ATOM 137 CD1 TYR D 69 32.814 -8.479 8.798 1.00 62.46 ATOM 138 CD2 TYR D 69 33.263 -7.999 6.486 1.00 61.50 ATOM 139 CE1 TYR D 69 31.679 -9.200 8.436 1.00 64.46 ATOM 140 CE2 TYR D 69 32.126 -8.717 6.114 1.00 64.24 ATOM 141 CZ TYR D 69 31.340 -9.315 7.093 1.00 65.54 ATOM 142 OH TYR D 69 30.217 -10.028 6.739 1.00 66.17 ATOM 143 N GLU D 70 36.165 -3.952 8.172 1.00 43.62 ATOM 144 CA GLU D 70 37.198 -2.967 8.458 1.00 42.80 ATOM 145 C GLU D 70 36.520 -1.619 8.700 1.00 40.16 ATOM 146 O GLU D 70 35.410 -1.379 8.211 1.00 38.00 ATOM 147 CB GLU D 70 38.163 -2.845 7.274 1.00 44.32 ATOM 148 CG GLU D 70 39.097 -4.032 7.063 1.00 48.07 ATOM 149 CD GLU D 70 40.205 -3.763 6.038 1.00 47.23 ATOM 150 OE1 GLU D 70 40.156 -2.744 5.317 1.00 45.21 ATOM 151 OE2 GLU D 70 41.143 -4.586 5.950 1.00 49.95 ATOM 152 N CYS D 71 37.176 -0.751 9.461 1.00 37.28 ATOM 153 CA CYS D 71 36.734 0.637 9.611 1.00 36.49 ATOM 154 C CYS D 71 37.936 1.548 9.435 1.00 36.13 ATOM 155 O CYS D 71 38.837 1.542 10.270 1.00 37.81 ATOM 156 CB CYS D 71 36.119 0.891 10.994 1.00 34.76 ATOM 157 SG CYS D 71 35.739 2.640 11.319 1.00 37.10 ATOM 158 N TRP D 72 37.951 2.333 8.364 1.00 33.55 ATOM 159 CA TRP D 72 39.030 3.305 8.169 1.00 33.95 ATOM 160 C TRP D 72 38.589 4.648 8.647 1.00 33.41 ATOM 161 O TRP D 72 37.654 5.250 8.097 1.00 31.94 ATOM 162 CB TRP D 72 39.445 3.400 6.712 1.00 32.84 ATOM 163 CG TRP D 72 39.506 2.092 5.977 1.00 33.00 ATOM 164 CD1 TRP D 72 39.708 0.817 6.503 1.00 32.47 ATOM 165 CD2 TRP D 72 39.388 1.896 4.532 1.00 33.09 ATOM 166 NE1 TRP D 72 39.706 -0.129 5.508 1.00 33.66 ATOM 167 CE2 TRP D 72 39.527 0.450 4.301 1.00 33.10 ATOM 168 CE3 TRP D 72 39.170 2.736 3.449 1.00 32.94 ATOM 169 CZ2 TRP D 72 39.455 -0.102 3.028 1.00 35.41 ATOM 170 CZ3 TRP D 72 39.102 2.167 2.168 1.00 35.40 ATOM 171 CH2 TRP D 72 39.240 0.783 1.966 1.00 35.23 ATOM 172 N CYS D 73 39.266 5.130 9.675 1.00 32.95 ATOM 173 CA CYS D 73 38.896 6.370 10.323 1.00 33.61 ATOM 174 C CYS D 73 39.540 7.576 9.645 1.00 33.16 ATOM 175 O CYS D 73 40.655 7.480 9.124 1.00 30.06 ATOM 176 CB CYS D 73 39.271 6.306 11.807 1.00 36.23 ATOM 177 SG CYS D 73 38.308 5.093 12.746 1.00 42.13 ATOM 178 N PRO D 74 38.827 8.720 9.623 1.00 32.14 ATOM 179 CA PRO D 74 39.507 9.955 9.259 1.00 33.40 ATOM 180 C PRO D 74 40.696 10.199 10.192 1.00 35.23 ATOM 181 O PRO D 74 40.737 9.673 11.315 1.00 32.46 ATOM 182 CB PRO D 74 38.432 11.034 9.469 1.00 34.96 ATOM 183 CG PRO D 74 37.134 10.302 9.443 1.00 33.23 ATOM 184 CD PRO D 74 37.423 8.947 10.011 1.00 32.72 ATOM 185 N PHE D 75 41.656 10.985 9.724 1.00 38.78 ATOM 186 CA PHE D 75 42.894 11.222 10.463 1.00 42.22 ATOM 187 C PHE D 75 42.689 11.655 11.919 1.00 44.31 ATOM 188 O PHE D 75 41.824 12.484 12.218 1.00 43.22 ATOM 189 CB PHE D 75 43.773 12.238 9.726 1.00 45.67 ATOM 190 CG PHE D 75 45.004 12.630 10.492 1.00 49.12 ATOM 191 CD1 PHE D 75 46.173 11.893 10.372 1.00 48.12 ATOM 192 CD2 PHE D 75 44.984 13.720 11.358 1.00 50.95 ATOM 193 CE1 PHE D 75 47.304 12.240 11.091 1.00 51.14 ATOM 194 CE2 PHE D 75 46.115 14.074 12.084 1.00 53.52 ATOM 195 CZ PHE D 75 47.278 13.336 11.945 1.00 53.59 ATOM 196 N GLY D 76 43.489 11.079 12.814 1.00 45.19 ATOM 197 CA GLY D 76 43.484 11.454 14.230 1.00 46.46 ATOM 198 C GLY D 76 42.514 10.671 15.098 1.00 48.51 ATOM 199 O GLY D 76 42.415 10.924 16.300 1.00 50.24 ATOM 200 N PHE D 77 41.796 9.727 14.497 1.00 46.52 ATOM 201 CA PHE D 77 40.810 8.928 15.223 1.00 46.77 ATOM 202 C PHE D 77 41.105 7.441 15.083 1.00 46.62 ATOM 203 O PHE D 77 41.636 7.005 14.058 1.00 43.27 ATOM 204 CB PHE D 77 39.397 9.220 14.711 1.00 47.86 ATOM 205 CG PHE D 77 38.849 10.556 15.127 1.00 50.32 ATOM 206 CD1 PHE D 77 39.278 11.733 14.512 1.00 50.79 ATOM 207 CD2 PHE D 77 37.864 10.637 16.108 1.00 52.31 ATOM 208 CE1 PHE D 77 38.762 12.963 14.895 1.00 52.29 ATOM 209 CE2 PHE D 77 37.332 11.863 16.485 1.00 53.26 ATOM 210 CZ PHE D 77 37.785 13.027 15.879 1.00 52.54 ATOM 211 N GLU D 78 40.744 6.677 16.116 1.00 49.84 ATOM 212 CA GLU D 78 40.965 5.227 16.182 1.00 54.84 ATOM 213 C GLU D 78 39.757 4.550 16.840 1.00 57.01 ATOM 214 O GLU D 78 38.916 5.224 17.445 1.00 56.00 ATOM 215 CB GLU D 78 42.223 4.918 17.012 1.00 58.80 ATOM 216 CG GLU D 78 43.471 5.696 16.614 1.00 64.35 ATOM 217 CD GLU D 78 44.264 6.197 17.811 1.00 68.14 ATOM 218 OE1 GLU D 78 44.576 5.378 18.704 1.00 66.82 ATOM 219 OE2 GLU D 78 44.579 7.413 17.856 1.00 70.51 ATOM 220 N GLY D 79 39.682 3.221 16.736 1.00 60.53 ATOM 221 CA GLY D 79 38.624 2.437 17.397 1.00 62.75 ATOM 222 C GLY D 79 37.651 1.815 16.412 1.00 65.97 ATOM 223 O GLY D 79 37.704 2.118 15.216 1.00 67.70 ATOM 224 N LYS D 80 36.754 0.954 16.903 1.00 65.50 ATOM 225 CA LYS D 80 35.799 0.258 16.018 1.00 65.76 ATOM 226 C LYS D 80 34.816 1.231 15.351 1.00 63.75 ATOM 227 O LYS D 80 34.277 0.947 14.275 1.00 65.23 ATOM 228 CB LYS D 80 35.069 -0.900 16.734 1.00 66.56 ATOM 229 CG LYS D 80 33.686 -0.577 17.294 1.00 68.89 ATOM 230 CD LYS D 80 32.666 -1.655 16.932 1.00 69.64 ATOM 231 CE LYS D 80 32.610 -2.789 17.949 1.00 70.59 ATOM 232 NZ LYS D 80 31.788 -2.437 19.142 1.00 70.94 ATOM 233 N ASN D 81 34.598 2.373 15.999 1.00 59.05 ATOM 234 CA ASN D 81 33.809 3.460 15.429 1.00 58.37 ATOM 235 C ASN D 81 34.479 4.824 15.623 1.00 55.52 ATOM 236 O ASN D 81 33.821 5.815 15.969 1.00 52.99 ATOM 237 CB ASN D 81 32.385 3.450 15.995 1.00 60.46 ATOM 238 CG ASN D 81 31.541 2.313 15.438 1.00 62.19 ATOM 239 OD1 ASN D 81 30.835 1.627 16.184 1.00 61.90 ATOM 240 ND2 ASN D 81 31.610 2.105 14.121 1.00 59.66 ATOM 241 N CYS D 82 35.798 4.855 15.417 1.00 50.11 ATOM 242 CA CYS D 82 36.581 6.096 15.415 1.00 49.30 ATOM 243 C CYS D 82 36.350 6.953 16.660 1.00 51.89 ATOM 244 O CYS D 82 36.406 8.185 16.601 1.00 49.74 ATOM 245 CB CYS D 82 36.306 6.891 14.132 1.00 45.42 ATOM 246 SG CYS D 82 36.410 5.850 12.659 1.00 39.41 ATOM 247 N GLU D 83 36.108 6.276 17.782 1.00 59.57 ATOM 248 CA GLU D 83 35.778 6.920 19.056 1.00 67.09 ATOM 249 C GLU D 83 36.966 7.652 19.686 1.00 71.77 ATOM 250 O GLU D 83 36.786 8.691 20.327 1.00 72.50 ATOM 251 CB GLU D 83 35.169 5.909 20.050 1.00 66.87 ATOM 252 CG GLU D 83 36.032 4.692 20.390 1.00 70.75 ATOM 253 CD GLU D 83 35.789 3.485 19.486 1.00 73.14 ATOM 254 OE1 GLU D 83 35.783 2.346 20.005 1.00 71.71 ATOM 255 OE2 GLU D 83 35.608 3.659 18.261 1.00 71.90 ATOM 256 N LEU D 84 38.170 7.115 19.486 1.00 76.71 ATOM 257 CA LEU D 84 39.376 7.645 20.128 1.00 77.77 ATOM 258 C LEU D 84 40.357 8.214 19.105 1.00 77.02 ATOM 259 O LEU D 84 41.213 9.029 19.449 1.00 78.96 ATOM 260 CB LEU D 84 40.060 6.549 20.968 1.00 81.50 ATOM 261 CG LEU D 84 39.244 5.857 22.078 1.00 84.29 ATOM 262 CD1 LEU D 84 39.881 4.543 22.521 1.00 83.24 ATOM 263 CD2 LEU D 84 38.956 6.774 23.269 1.00 84.60 TER