HEADER transferase/protein binding 11-OCT-14 4WNH TITLE Crystal structure of mouse Xyloside xylosyltransferase 1 complexed TITLE 2 with manganese,acceptor ligand and UDP-Xylose COMPND MOL_ID: 2; COMPND 2 MOLECULE: Coagulation factor IX; COMPND 3 CHAIN: D; COMPND 4 EC: 3.4.21.22; COMPND 5 FRAGMENT: unp residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.95 ANGSTORMS DBREF 4WNH D 46 84 UNP P00740 FA9_HUMAN 92 130 SEQRES 1 D 35 GLN CYS GLU SER ASN PRO CYS LEU ASN GLY GLY SER CYS SEQRES 2 D 35 LYS ASP ASP ILE ASN SER TYR GLU CYS TRP CYS PRO PHE SEQRES 3 D 35 GLY PHE GLU GLY LYS ASN CYS GLU LEU ATOM 1 N GLN D 50 -14.085 10.393 10.721 1.00 47.52 ATOM 2 CA GLN D 50 -15.041 11.377 10.116 1.00 46.49 ATOM 3 C GLN D 50 -14.817 12.777 10.694 1.00 45.30 ATOM 4 O GLN D 50 -13.884 12.999 11.467 1.00 48.65 ATOM 5 CB GLN D 50 -16.489 10.937 10.349 1.00 44.99 ATOM 6 N CYS D 51 -15.665 13.724 10.306 1.00 42.93 ATOM 7 CA CYS D 51 -15.602 15.077 10.863 1.00 39.02 ATOM 8 C CYS D 51 -16.987 15.553 11.251 1.00 37.05 ATOM 9 O CYS D 51 -17.992 15.039 10.765 1.00 38.66 ATOM 10 CB CYS D 51 -14.973 16.040 9.859 1.00 37.79 ATOM 11 SG CYS D 51 -16.079 16.658 8.546 1.00 34.34 ATOM 12 N GLU D 52 -17.044 16.546 12.124 1.00 35.88 ATOM 13 CA GLU D 52 -18.317 17.151 12.467 1.00 35.89 ATOM 14 C GLU D 52 -18.726 18.114 11.357 1.00 31.70 ATOM 15 O GLU D 52 -17.933 18.945 10.936 1.00 31.95 ATOM 16 CB GLU D 52 -18.228 17.879 13.805 1.00 39.66 ATOM 17 CG GLU D 52 -19.495 18.654 14.164 1.00 46.53 ATOM 18 CD GLU D 52 -20.085 18.289 15.521 1.00 50.90 ATOM 19 OE1 GLU D 52 -20.838 19.122 16.071 1.00 52.35 ATOM 20 OE2 GLU D 52 -19.823 17.168 16.026 1.00 53.81 ATOM 21 N SER D 53 -19.967 18.018 10.899 1.00 27.68 ATOM 22 CA SER D 53 -20.448 18.934 9.862 1.00 26.25 ATOM 23 C SER D 53 -20.246 20.372 10.271 1.00 26.79 ATOM 24 O SER D 53 -20.479 20.738 11.425 1.00 27.01 ATOM 25 CB SER D 53 -21.921 18.746 9.588 1.00 24.57 ATOM 26 OG SER D 53 -22.174 17.477 9.017 1.00 23.87 ATOM 27 N ASN D 54 -19.825 21.177 9.304 1.00 27.03 ATOM 28 CA ASN D 54 -19.628 22.585 9.515 1.00 28.26 ATOM 29 C ASN D 54 -21.003 23.233 9.636 1.00 29.68 ATOM 30 O ASN D 54 -21.798 23.187 8.693 1.00 28.35 ATOM 31 CB ASN D 54 -18.863 23.174 8.348 1.00 27.97 ATOM 32 CG ASN D 54 -18.451 24.607 8.587 1.00 28.32 ATOM 33 OD1 ASN D 54 -18.809 25.218 9.600 1.00 28.02 ATOM 34 ND2 ASN D 54 -17.689 25.155 7.654 1.00 28.76 ATOM 35 N PRO D 55 -21.303 23.820 10.806 1.00 30.90 ATOM 36 CA PRO D 55 -22.613 24.466 10.960 1.00 32.00 ATOM 37 C PRO D 55 -22.730 25.736 10.112 1.00 30.76 ATOM 38 O PRO D 55 -23.845 26.179 9.832 1.00 32.69 ATOM 39 CB PRO D 55 -22.686 24.766 12.469 1.00 32.46 ATOM 40 CG PRO D 55 -21.267 24.882 12.898 1.00 33.39 ATOM 41 CD PRO D 55 -20.459 23.978 12.005 1.00 32.29 ATOM 42 N CYS D 56 -21.589 26.289 9.701 1.00 30.70 ATOM 43 CA CYS D 56 -21.537 27.489 8.870 1.00 31.98 ATOM 44 C CYS D 56 -21.959 27.187 7.434 1.00 31.35 ATOM 45 O CYS D 56 -21.799 26.067 6.947 1.00 29.22 ATOM 46 CB CYS D 56 -20.129 28.090 8.876 1.00 33.98 ATOM 47 SG CYS D 56 -19.335 28.178 10.510 1.00 37.17 ATOM 48 N LEU D 57 -22.501 28.197 6.767 1.00 31.54 ATOM 49 CA LEU D 57 -22.999 28.060 5.393 1.00 32.77 ATOM 50 C LEU D 57 -21.884 28.163 4.362 1.00 32.34 ATOM 51 O LEU D 57 -22.028 27.675 3.249 1.00 31.13 ATOM 52 CB LEU D 57 -24.045 29.145 5.094 1.00 34.70 ATOM 53 CG LEU D 57 -25.344 29.117 5.905 1.00 36.21 ATOM 54 CD1 LEU D 57 -26.205 30.338 5.598 1.00 36.80 ATOM 55 CD2 LEU D 57 -26.115 27.851 5.596 1.00 37.12 ATOM 56 N ASN D 58 -20.784 28.805 4.750 1.00 33.36 ATOM 57 CA ASN D 58 -19.622 29.004 3.889 1.00 33.91 ATOM 58 C ASN D 58 -18.458 28.110 4.315 1.00 35.96 ATOM 59 O ASN D 58 -18.480 27.505 5.389 1.00 33.50 ATOM 60 CB ASN D 58 -19.155 30.456 3.976 1.00 35.46 ATOM 61 CG ASN D 58 -18.721 30.838 5.383 1.00 37.01 ATOM 62 OD1 ASN D 58 -19.428 30.562 6.361 1.00 34.74 ATOM 63 ND2 ASN D 58 -17.555 31.465 5.496 1.00 38.07 ATOM 64 N GLY D 59 -17.430 28.068 3.477 1.00 36.62 ATOM 65 CA GLY D 59 -16.250 27.263 3.758 1.00 38.57 ATOM 66 C GLY D 59 -16.462 25.782 3.540 1.00 37.23 ATOM 67 O GLY D 59 -17.428 25.368 2.900 1.00 38.51 ATOM 68 N GLY D 60 -15.541 24.983 4.080 1.00 37.35 ATOM 69 CA GLY D 60 -15.562 23.534 3.908 1.00 34.50 ATOM 70 C GLY D 60 -16.704 22.833 4.619 1.00 32.68 ATOM 71 O GLY D 60 -17.467 23.451 5.368 1.00 30.46 ATOM 72 N SER D 61 -16.816 21.528 4.380 1.00 31.03 ATOM 73 CA SER D 61 -17.901 20.735 4.923 1.00 31.67 ATOM 74 C SER D 61 -17.686 20.311 6.377 1.00 30.04 ATOM 75 O SER D 61 -18.638 19.881 7.021 1.00 28.16 ATOM 76 CB SER D 61 -18.147 19.495 4.053 1.00 34.16 ATOM 77 OG SER D 61 -16.964 18.725 3.897 1.00 36.97 ATOM 78 N CYS D 62 -16.449 20.413 6.873 1.00 30.20 ATOM 79 CA CYS D 62 -16.107 20.103 8.262 1.00 32.48 ATOM 80 C CYS D 62 -15.973 21.382 9.070 1.00 34.66 ATOM 81 O CYS D 62 -15.447 22.382 8.573 1.00 33.51 ATOM 82 CB CYS D 62 -14.777 19.346 8.318 1.00 34.94 ATOM 83 SG CYS D 62 -14.829 17.769 7.427 1.00 35.37 ATOM 84 N LYS D 63 -16.423 21.348 10.319 1.00 36.26 ATOM 85 CA LYS D 63 -16.325 22.533 11.162 1.00 40.42 ATOM 86 C LYS D 63 -14.858 22.797 11.471 1.00 41.29 ATOM 87 O LYS D 63 -14.033 21.878 11.438 1.00 37.24 ATOM 88 CB LYS D 63 -17.198 22.433 12.424 1.00 43.99 ATOM 89 CG LYS D 63 -16.515 22.155 13.748 1.00 48.44 ATOM 90 CD LYS D 63 -17.562 22.167 14.859 1.00 53.33 ATOM 91 CE LYS D 63 -17.010 21.695 16.197 1.00 58.69 ATOM 92 NZ LYS D 63 -16.397 22.805 16.984 1.00 60.28 ATOM 93 N ASP D 64 -14.552 24.066 11.725 1.00 43.02 ATOM 94 CA ASP D 64 -13.175 24.545 11.884 1.00 47.75 ATOM 95 C ASP D 64 -12.326 24.195 10.650 1.00 50.29 ATOM 96 O ASP D 64 -11.200 23.704 10.759 1.00 48.34 ATOM 97 CB ASP D 64 -12.552 24.006 13.181 1.00 49.29 ATOM 98 CG ASP D 64 -13.444 24.232 14.401 1.00 49.95 ATOM 99 OD1 ASP D 64 -13.971 25.358 14.577 1.00 49.67 ATOM 100 OD2 ASP D 64 -13.616 23.273 15.182 1.00 49.44 ATOM 101 N ASP D 65 -12.916 24.431 9.477 1.00 54.07 ATOM 102 CA ASP D 65 -12.212 24.386 8.201 1.00 54.63 ATOM 103 C ASP D 65 -11.023 25.350 8.292 1.00 54.01 ATOM 104 O ASP D 65 -11.209 26.555 8.480 1.00 55.05 ATOM 105 CB ASP D 65 -13.180 24.779 7.064 1.00 55.41 ATOM 106 CG ASP D 65 -12.469 25.124 5.747 1.00 57.18 ATOM 107 OD1 ASP D 65 -12.954 26.038 5.038 1.00 59.74 ATOM 108 OD2 ASP D 65 -11.448 24.493 5.406 1.00 55.52 ATOM 109 N ILE D 66 -9.809 24.809 8.177 1.00 51.69 ATOM 110 CA ILE D 66 -8.574 25.609 8.285 1.00 49.72 ATOM 111 C ILE D 66 -8.520 26.788 7.302 1.00 48.10 ATOM 112 O ILE D 66 -7.936 27.833 7.594 1.00 48.78 ATOM 113 CB ILE D 66 -7.311 24.717 8.113 1.00 50.17 ATOM 114 CG1 ILE D 66 -6.028 25.471 8.500 1.00 49.90 ATOM 115 CG2 ILE D 66 -7.200 24.164 6.694 1.00 49.13 ATOM 116 CD1 ILE D 66 -5.887 25.734 9.986 1.00 49.42 ATOM 117 N ASN D 67 -9.131 26.626 6.137 1.00 45.84 ATOM 118 CA ASN D 67 -9.124 27.689 5.142 1.00 46.03 ATOM 119 C ASN D 67 -10.322 28.652 5.255 1.00 47.32 ATOM 120 O ASN D 67 -10.558 29.438 4.341 1.00 46.43 ATOM 121 CB ASN D 67 -9.009 27.071 3.737 1.00 42.42 ATOM 122 CG ASN D 67 -7.629 26.479 3.478 1.00 40.38 ATOM 123 OD1 ASN D 67 -6.622 27.023 3.922 1.00 34.50 ATOM 124 ND2 ASN D 67 -7.578 25.368 2.754 1.00 39.87 ATOM 125 N SER D 68 -11.043 28.600 6.379 1.00 50.20 ATOM 126 CA SER D 68 -12.201 29.476 6.648 1.00 56.26 ATOM 127 C SER D 68 -11.984 30.388 7.851 1.00 59.36 ATOM 128 O SER D 68 -11.450 29.958 8.879 1.00 56.68 ATOM 129 CB SER D 68 -13.459 28.645 6.914 1.00 57.24 ATOM 130 OG SER D 68 -14.278 28.605 5.768 1.00 59.77 ATOM 131 N TYR D 69 -12.435 31.635 7.725 1.00 63.23 ATOM 132 CA TYR D 69 -12.355 32.609 8.815 1.00 65.18 ATOM 133 C TYR D 69 -13.750 33.061 9.252 1.00 61.65 ATOM 134 O TYR D 69 -14.088 32.977 10.427 1.00 64.31 ATOM 135 CB TYR D 69 -11.463 33.775 8.394 1.00 69.15 ATOM 136 CG TYR D 69 -10.101 33.289 7.934 1.00 75.62 ATOM 137 CD1 TYR D 69 -9.195 32.732 8.846 1.00 79.82 ATOM 138 CD2 TYR D 69 -9.730 33.345 6.587 1.00 79.87 ATOM 139 CE1 TYR D 69 -7.955 32.265 8.436 1.00 79.83 ATOM 140 CE2 TYR D 69 -8.489 32.880 6.168 1.00 82.12 ATOM 141 CZ TYR D 69 -7.608 32.340 7.097 1.00 83.40 ATOM 142 OH TYR D 69 -6.375 31.877 6.695 1.00 84.17 ATOM 143 N GLU D 70 -14.568 33.506 8.307 1.00 59.34 ATOM 144 CA GLU D 70 -15.955 33.859 8.606 1.00 57.73 ATOM 145 C GLU D 70 -16.819 32.605 8.820 1.00 52.44 ATOM 146 O GLU D 70 -16.492 31.510 8.338 1.00 46.87 ATOM 147 CB GLU D 70 -16.550 34.702 7.470 1.00 62.27 ATOM 148 CG GLU D 70 -15.825 36.018 7.200 1.00 65.16 ATOM 149 CD GLU D 70 -16.568 36.921 6.213 1.00 69.62 ATOM 150 OE1 GLU D 70 -17.173 36.402 5.238 1.00 66.16 ATOM 151 OE2 GLU D 70 -16.542 38.161 6.413 1.00 69.45 ATOM 152 N CYS D 71 -17.920 32.781 9.545 1.00 47.13 ATOM 153 CA CYS D 71 -18.935 31.747 9.700 1.00 44.94 ATOM 154 C CYS D 71 -20.319 32.370 9.549 1.00 44.81 ATOM 155 O CYS D 71 -20.799 33.029 10.470 1.00 45.33 ATOM 156 CB CYS D 71 -18.831 31.079 11.073 1.00 40.65 ATOM 157 SG CYS D 71 -20.116 29.845 11.374 1.00 40.13 ATOM 158 N TRP D 72 -20.963 32.146 8.404 1.00 42.72 ATOM 159 CA TRP D 72 -22.327 32.636 8.191 1.00 43.24 ATOM 160 C TRP D 72 -23.291 31.568 8.660 1.00 43.38 ATOM 161 O TRP D 72 -23.347 30.473 8.088 1.00 46.20 ATOM 162 CB TRP D 72 -22.585 32.971 6.721 1.00 41.85 ATOM 163 CG TRP D 72 -21.471 33.684 6.057 1.00 40.26 ATOM 164 CD1 TRP D 72 -20.508 34.451 6.652 1.00 40.85 ATOM 165 CD2 TRP D 72 -21.207 33.723 4.654 1.00 40.83 ATOM 166 NE1 TRP D 72 -19.651 34.947 5.706 1.00 41.95 ATOM 167 CE2 TRP D 72 -20.055 34.517 4.469 1.00 41.28 ATOM 168 CE3 TRP D 72 -21.824 33.153 3.534 1.00 40.89 ATOM 169 CZ2 TRP D 72 -19.513 34.767 3.209 1.00 43.23 ATOM 170 CZ3 TRP D 72 -21.285 33.399 2.278 1.00 42.00 ATOM 171 CH2 TRP D 72 -20.140 34.201 2.126 1.00 43.54 ATOM 172 N CYS D 73 -24.031 31.875 9.716 1.00 42.43 ATOM 173 CA CYS D 73 -24.883 30.896 10.365 1.00 42.70 ATOM 174 C CYS D 73 -26.251 30.851 9.706 1.00 43.81 ATOM 175 O CYS D 73 -26.722 31.866 9.186 1.00 44.08 ATOM 176 CB CYS D 73 -25.024 31.221 11.859 1.00 44.65 ATOM 177 SG CYS D 73 -23.504 30.973 12.818 1.00 47.78 ATOM 178 N PRO D 74 -26.894 29.666 9.702 1.00 42.84 ATOM 179 CA PRO D 74 -28.288 29.601 9.261 1.00 43.76 ATOM 180 C PRO D 74 -29.168 30.493 10.136 1.00 45.55 ATOM 181 O PRO D 74 -28.829 30.736 11.301 1.00 40.37 ATOM 182 CB PRO D 74 -28.657 28.122 9.420 1.00 43.69 ATOM 183 CG PRO D 74 -27.574 27.518 10.240 1.00 43.15 ATOM 184 CD PRO D 74 -26.348 28.334 10.001 1.00 42.15 ATOM 185 N PHE D 75 -30.262 30.999 9.570 1.00 47.92 ATOM 186 CA PHE D 75 -31.099 31.966 10.275 1.00 50.89 ATOM 187 C PHE D 75 -31.436 31.514 11.693 1.00 50.60 ATOM 188 O PHE D 75 -31.817 30.362 11.908 1.00 49.57 ATOM 189 CB PHE D 75 -32.411 32.235 9.526 1.00 53.12 ATOM 190 CG PHE D 75 -33.370 33.094 10.308 1.00 56.82 ATOM 191 CD1 PHE D 75 -33.377 34.470 10.149 1.00 56.71 ATOM 192 CD2 PHE D 75 -34.226 32.528 11.250 1.00 60.15 ATOM 193 CE1 PHE D 75 -34.239 35.259 10.886 1.00 57.12 ATOM 194 CE2 PHE D 75 -35.089 33.319 11.995 1.00 61.12 ATOM 195 CZ PHE D 75 -35.099 34.687 11.804 1.00 60.08 ATOM 196 N GLY D 76 -31.307 32.439 12.644 1.00 51.65 ATOM 197 CA GLY D 76 -31.711 32.212 14.033 1.00 54.90 ATOM 198 C GLY D 76 -30.620 31.671 14.940 1.00 56.39 ATOM 199 O GLY D 76 -30.896 31.294 16.077 1.00 59.13 ATOM 200 N PHE D 77 -29.386 31.618 14.439 1.00 57.36 ATOM 201 CA PHE D 77 -28.258 31.085 15.202 1.00 58.45 ATOM 202 C PHE D 77 -27.072 32.040 15.123 1.00 58.01 ATOM 203 O PHE D 77 -26.904 32.745 14.125 1.00 57.20 ATOM 204 CB PHE D 77 -27.865 29.701 14.678 1.00 59.02 ATOM 205 CG PHE D 77 -28.808 28.603 15.088 1.00 60.23 ATOM 206 CD1 PHE D 77 -30.078 28.507 14.533 1.00 60.01 ATOM 207 CD2 PHE D 77 -28.418 27.652 16.019 1.00 62.39 ATOM 208 CE1 PHE D 77 -30.945 27.494 14.911 1.00 63.27 ATOM 209 CE2 PHE D 77 -29.276 26.632 16.395 1.00 63.80 ATOM 210 CZ PHE D 77 -30.541 26.552 15.841 1.00 62.59 ATOM 211 N GLU D 78 -26.259 32.044 16.180 1.00 61.16 ATOM 212 CA GLU D 78 -25.159 33.000 16.356 1.00 65.55 ATOM 213 C GLU D 78 -23.946 32.304 16.977 1.00 65.88 ATOM 214 O GLU D 78 -24.068 31.216 17.555 1.00 66.15 ATOM 215 CB GLU D 78 -25.598 34.152 17.278 1.00 67.82 ATOM 216 CG GLU D 78 -26.885 34.861 16.861 1.00 71.30 ATOM 217 CD GLU D 78 -27.599 35.542 18.019 1.00 74.05 ATOM 218 OE1 GLU D 78 -26.940 36.292 18.772 1.00 74.22 ATOM 219 OE2 GLU D 78 -28.826 35.334 18.170 1.00 75.59 ATOM 220 N GLY D 79 -22.783 32.942 16.863 1.00 66.82 ATOM 221 CA GLY D 79 -21.552 32.461 17.502 1.00 68.68 ATOM 222 C GLY D 79 -20.560 31.905 16.501 1.00 71.17 ATOM 223 O GLY D 79 -20.868 31.811 15.309 1.00 72.15 ATOM 224 N LYS D 80 -19.369 31.530 16.974 1.00 71.32 ATOM 225 CA LYS D 80 -18.342 30.969 16.082 1.00 72.95 ATOM 226 C LYS D 80 -18.676 29.540 15.615 1.00 71.45 ATOM 227 O LYS D 80 -18.153 29.083 14.600 1.00 70.91 ATOM 228 CB LYS D 80 -16.925 31.052 16.693 1.00 73.28 ATOM 229 CG LYS D 80 -16.648 30.212 17.942 1.00 74.22 ATOM 230 CD LYS D 80 -15.261 29.561 17.885 1.00 74.52 ATOM 231 CE LYS D 80 -14.489 29.669 19.196 1.00 73.45 ATOM 232 NZ LYS D 80 -15.134 28.956 20.331 1.00 71.98 ATOM 233 N ASN D 81 -19.555 28.855 16.349 1.00 68.99 ATOM 234 CA ASN D 81 -20.069 27.541 15.949 1.00 69.14 ATOM 235 C ASN D 81 -21.599 27.530 15.794 1.00 65.18 ATOM 236 O ASN D 81 -22.237 26.471 15.868 1.00 63.17 ATOM 237 CB ASN D 81 -19.631 26.480 16.972 1.00 71.80 ATOM 238 CG ASN D 81 -18.145 26.163 16.889 1.00 73.69 ATOM 239 OD1 ASN D 81 -17.406 26.334 17.860 1.00 70.72 ATOM 240 ND2 ASN D 81 -17.700 25.695 15.724 1.00 75.08 ATOM 241 N CYS D 82 -22.177 28.709 15.560 1.00 60.07 ATOM 242 CA CYS D 82 -23.629 28.884 15.478 1.00 56.51 ATOM 243 C CYS D 82 -24.346 28.250 16.668 1.00 59.70 ATOM 244 O CYS D 82 -25.384 27.605 16.509 1.00 54.55 ATOM 245 CB CYS D 82 -24.158 28.326 14.149 1.00 53.62 ATOM 246 SG CYS D 82 -23.237 28.945 12.719 1.00 49.40 ATOM 247 N GLU D 83 -23.796 28.473 17.863 1.00 67.18 ATOM 248 CA GLU D 83 -24.231 27.754 19.072 1.00 73.97 ATOM 249 C GLU D 83 -25.548 28.278 19.654 1.00 78.93 ATOM 250 O GLU D 83 -26.392 27.482 20.078 1.00 80.90 ATOM 251 CB GLU D 83 -23.123 27.698 20.156 1.00 73.96 ATOM 252 CG GLU D 83 -22.471 29.023 20.549 1.00 74.25 ATOM 253 CD GLU D 83 -21.288 29.408 19.664 1.00 74.56 ATOM 254 OE1 GLU D 83 -20.319 30.014 20.169 1.00 72.93 ATOM 255 OE2 GLU D 83 -21.323 29.115 18.452 1.00 74.97 ATOM 256 N LEU D 84 -25.731 29.601 19.648 1.00 82.55 ATOM 257 CA LEU D 84 -26.889 30.236 20.292 1.00 81.80 ATOM 258 C LEU D 84 -27.681 31.105 19.326 1.00 77.14 ATOM 259 O LEU D 84 -28.825 31.460 19.605 1.00 70.56 ATOM 260 CB LEU D 84 -26.427 31.071 21.495 1.00 87.06 ATOM 261 CG LEU D 84 -26.175 30.290 22.801 1.00 90.71 ATOM 262 CD1 LEU D 84 -25.020 30.875 23.607 1.00 90.25 ATOM 263 CD2 LEU D 84 -27.441 30.208 23.652 1.00 90.16 TER