HEADER PROTEIN BINDING 17-OCT-14 4WPB TITLE Vascular endothelial growth factor in complex with alpha/beta-VEGF-1 COMPND MOL_ID: 2; COMPND 2 MOLECULE: alpha/beta-VEGF-1; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 This is a synthetic designed molecule based initially on the B domain COMPND 6 OTHER_DETAILS: of Staph aureus protein A.; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.11 ANGSTORMS DBREF 4WPB C 1 40 PDB 4WPB 4WPB 1 40 SEQRES 1 C 33 GLU XCP CYS ASN XPC ARG ALA ILE GLU AIB ALA LEU ASP SEQRES 2 C 33 PRO ASN LEU ASN ASP GLN GLN PHE HIS AIB LYS ILE TRP SEQRES 3 C 33 XPC ILE ILE XCP ASP CYS NH2 ATOM 1 N GLU C 8 27.507 -21.867 33.935 1.00 78.77 ATOM 2 CA GLU C 8 26.104 -21.601 33.630 1.00 74.16 ATOM 3 C GLU C 8 25.313 -21.167 34.879 1.00 72.16 ATOM 4 O GLU C 8 24.425 -20.307 34.793 1.00 68.52 ATOM 5 CB GLU C 8 25.458 -22.833 32.987 1.00 73.90 ATOM 6 CG GLU C 8 23.968 -22.670 32.736 1.00 68.62 ATOM 7 CD GLU C 8 23.438 -23.582 31.637 1.00 66.76 ATOM 8 OE1 GLU C 8 24.250 -24.100 30.827 1.00 69.06 ATOM 9 OE2 GLU C 8 22.198 -23.771 31.578 1.00 62.92 ATOM 10 N XCP C 9 25.673 -21.801 36.121 1.00 79.08 ATOM 11 CB XCP C 9 25.005 -21.490 37.415 1.00 77.69 ATOM 12 CG XCP C 9 25.119 -22.624 38.458 1.00 79.20 ATOM 13 CD XCP C 9 25.985 -22.072 39.617 1.00 82.24 ATOM 14 CE XCP C 9 25.750 -20.550 39.634 1.00 81.21 ATOM 15 CA XCP C 9 25.537 -20.213 38.146 1.00 79.35 ATOM 16 C XCP C 9 24.559 -19.078 37.937 1.00 75.84 ATOM 17 O XCP C 9 23.481 -19.052 38.530 1.00 73.29 ATOM 18 N CYS C 10 24.962 -18.157 37.057 1.00 72.41 ATOM 19 CA CYS C 10 24.166 -16.997 36.707 1.00 69.06 ATOM 20 C CYS C 10 22.833 -17.430 36.080 1.00 64.52 ATOM 21 O CYS C 10 21.762 -17.082 36.569 1.00 62.26 ATOM 22 CB CYS C 10 24.953 -16.104 35.744 1.00 73.11 ATOM 23 SG CYS C 10 26.582 -15.549 36.359 0.88 78.78 ATOM 24 N ASN C 11 22.907 -18.177 34.979 1.00 68.85 ATOM 25 CA ASN C 11 21.703 -18.714 34.326 1.00 64.91 ATOM 26 C ASN C 11 20.878 -19.596 35.247 1.00 64.29 ATOM 27 O ASN C 11 19.805 -19.210 35.699 1.00 62.17 ATOM 28 CB ASN C 11 22.048 -19.542 33.089 1.00 66.31 ATOM 29 CG ASN C 11 20.811 -19.911 32.289 1.00 62.31 ATOM 30 OD1 ASN C 11 19.898 -19.081 32.116 1.00 59.47 ATOM 31 ND2 ASN C 11 20.721 -21.184 31.886 1.00 62.74 ATOM 32 N XPC C 12 21.392 -20.804 35.528 1.00 64.74 ATOM 33 CB XPC C 12 20.667 -21.714 36.422 1.00 64.25 ATOM 34 CG XPC C 12 20.992 -23.197 36.207 1.00 65.81 ATOM 35 ND XPC C 12 20.756 -23.835 37.586 1.00 66.59 ATOM 36 CE XPC C 12 21.115 -22.756 38.626 1.00 68.05 ATOM 37 CA XPC C 12 21.033 -21.398 37.903 1.00 66.63 ATOM 38 C XPC C 12 20.062 -20.416 38.558 1.00 64.81 ATOM 39 O XPC C 12 18.878 -20.690 38.684 1.00 62.53 ATOM 40 N ARG C 13 20.575 -19.283 38.959 1.00 62.55 ATOM 41 CA ARG C 13 19.763 -18.268 39.614 1.00 61.77 ATOM 42 C ARG C 13 18.622 -17.752 38.755 1.00 58.51 ATOM 43 O ARG C 13 17.522 -17.521 39.240 1.00 57.70 ATOM 44 CB ARG C 13 20.638 -17.105 40.049 1.00 65.20 ATOM 45 CG ARG C 13 21.475 -17.421 41.263 1.00 68.85 ATOM 46 CD ARG C 13 21.925 -16.157 41.961 1.00 71.45 ATOM 47 NE ARG C 13 22.963 -15.491 41.194 1.00 72.72 ATOM 48 CZ ARG C 13 24.259 -15.747 41.326 1.00 76.09 ATOM 49 NH1 ARG C 13 24.667 -16.651 42.209 1.00 78.36 ATOM 50 NH2 ARG C 13 25.147 -15.098 40.579 1.00 77.40 ATOM 51 N ALA C 14 18.904 -17.539 37.477 1.00 64.01 ATOM 52 CA ALA C 14 17.918 -16.985 36.548 1.00 61.21 ATOM 53 C ALA C 14 16.776 -17.952 36.247 1.00 59.17 ATOM 54 O ALA C 14 15.648 -17.535 35.990 1.00 57.88 ATOM 55 CB ALA C 14 18.598 -16.565 35.249 1.00 60.85 ATOM 56 N ILE C 15 17.063 -19.245 36.234 1.00 60.52 ATOM 57 CA ILE C 15 15.993 -20.205 36.014 1.00 58.95 ATOM 58 C ILE C 15 15.255 -20.424 37.334 1.00 59.69 ATOM 59 O ILE C 15 14.032 -20.431 37.351 1.00 58.73 ATOM 60 CB ILE C 15 16.500 -21.519 35.393 1.00 58.95 ATOM 61 CG1 ILE C 15 17.141 -21.210 34.022 1.00 58.49 ATOM 62 CG2 ILE C 15 15.344 -22.511 35.271 1.00 57.60 ATOM 63 CD1 ILE C 15 17.675 -22.407 33.248 1.00 59.33 ATOM 64 N GLU C 16 15.984 -20.548 38.442 1.00 59.09 ATOM 65 CA GLU C 16 15.333 -20.803 39.733 1.00 60.08 ATOM 66 C GLU C 16 14.340 -19.681 40.085 1.00 60.10 ATOM 67 O GLU C 16 13.174 -19.950 40.376 1.00 59.63 ATOM 68 CB GLU C 16 16.373 -20.973 40.847 1.00 56.67 ATOM 69 N AIB C 17 14.794 -18.435 40.035 1.00 61.33 ATOM 70 CA AIB C 17 13.900 -17.300 40.155 1.00 61.61 ATOM 71 C AIB C 17 12.564 -17.354 39.373 1.00 59.96 ATOM 72 O AIB C 17 11.463 -17.031 39.843 1.00 60.84 ATOM 73 CB1 AIB C 17 13.517 -17.049 41.615 1.00 62.60 ATOM 74 CB2 AIB C 17 14.606 -16.049 39.594 1.00 60.42 ATOM 75 N ALA C 18 12.695 -17.785 38.120 1.00 60.82 ATOM 76 CA ALA C 18 11.595 -17.812 37.158 1.00 59.54 ATOM 77 C ALA C 18 10.570 -18.884 37.479 1.00 59.23 ATOM 78 O ALA C 18 9.428 -18.807 37.035 1.00 59.11 ATOM 79 CB ALA C 18 12.141 -18.020 35.743 1.00 59.07 ATOM 80 N LEU C 19 10.997 -19.894 38.235 1.00 59.26 ATOM 81 CA LEU C 19 10.148 -21.034 38.590 1.00 58.97 ATOM 82 C LEU C 19 9.332 -20.808 39.836 1.00 60.73 ATOM 83 O LEU C 19 8.448 -21.602 40.145 1.00 60.73 ATOM 84 CB LEU C 19 11.004 -22.280 38.786 1.00 55.69 ATOM 85 CG LEU C 19 11.627 -22.816 37.518 1.00 54.26 ATOM 86 CD1 LEU C 19 12.610 -23.907 37.839 1.00 54.77 ATOM 87 CD2 LEU C 19 10.467 -23.348 36.715 1.00 53.14 ATOM 88 N ASP C 20 9.590 -19.686 40.508 1.00 62.54 ATOM 89 CA ASP C 20 8.928 -19.343 41.766 1.00 65.73 ATOM 90 C ASP C 20 7.480 -18.994 41.493 1.00 66.94 ATOM 91 O ASP C 20 7.189 -17.982 40.873 1.00 67.52 ATOM 92 CB ASP C 20 9.663 -18.175 42.419 1.00 65.49 ATOM 93 CG ASP C 20 9.260 -17.947 43.858 1.00 69.80 ATOM 94 OD1 ASP C 20 8.091 -18.217 44.202 1.00 71.16 ATOM 95 OD2 ASP C 20 10.114 -17.472 44.644 1.00 72.23 ATOM 96 N PRO C 21 6.564 -19.850 41.954 1.00 73.02 ATOM 97 CA PRO C 21 5.147 -19.612 41.690 1.00 73.89 ATOM 98 C PRO C 21 4.596 -18.428 42.481 1.00 77.69 ATOM 99 O PRO C 21 3.782 -17.670 41.933 1.00 78.46 ATOM 100 CB PRO C 21 4.489 -20.931 42.113 1.00 73.59 ATOM 101 CG PRO C 21 5.407 -21.478 43.182 1.00 74.21 ATOM 102 CD PRO C 21 6.794 -21.064 42.764 1.00 72.90 ATOM 103 N ASN C 22 5.070 -18.252 43.720 1.00 80.27 ATOM 104 CA ASN C 22 4.519 -17.260 44.655 1.00 84.56 ATOM 105 C ASN C 22 4.872 -15.805 44.339 1.00 85.80 ATOM 106 O ASN C 22 4.403 -14.907 45.024 1.00 89.52 ATOM 107 CB ASN C 22 4.942 -17.588 46.096 1.00 87.28 ATOM 108 CG ASN C 22 4.403 -18.931 46.584 1.00 86.86 ATOM 109 OD1 ASN C 22 5.167 -19.811 46.982 1.00 85.77 ATOM 110 ND2 ASN C 22 3.083 -19.084 46.571 1.00 88.01 ATOM 111 N LEU C 23 5.711 -15.592 43.326 1.00 82.95 ATOM 112 CA LEU C 23 6.098 -14.254 42.862 1.00 83.71 ATOM 113 C LEU C 23 5.068 -13.612 41.935 1.00 83.42 ATOM 114 O LEU C 23 4.046 -14.204 41.624 1.00 82.77 ATOM 115 CB LEU C 23 7.441 -14.313 42.126 1.00 81.01 ATOM 116 CG LEU C 23 8.718 -14.595 42.916 1.00 81.87 ATOM 117 CD1 LEU C 23 9.953 -14.537 42.037 1.00 79.59 ATOM 118 CD2 LEU C 23 8.827 -13.566 43.981 1.00 86.20 ATOM 119 N ASN C 24 5.357 -12.394 41.490 1.00 84.12 ATOM 120 CA ASN C 24 4.536 -11.718 40.487 1.00 83.71 ATOM 121 C ASN C 24 5.425 -11.235 39.354 1.00 81.16 ATOM 122 O ASN C 24 6.651 -11.174 39.524 1.00 80.67 ATOM 123 CB ASN C 24 3.790 -10.514 41.055 1.00 87.86 ATOM 124 CG ASN C 24 4.729 -9.386 41.469 1.00 89.85 ATOM 125 OD1 ASN C 24 5.250 -8.651 40.625 1.00 88.60 ATOM 126 ND2 ASN C 24 4.915 -9.221 42.776 1.00 93.31 ATOM 127 N ASP C 25 4.809 -10.835 38.236 1.00 80.03 ATOM 128 CA ASP C 25 5.550 -10.374 37.062 1.00 77.73 ATOM 129 C ASP C 25 6.648 -9.356 37.376 1.00 79.07 ATOM 130 O ASP C 25 7.792 -9.528 36.951 1.00 77.25 ATOM 131 CB ASP C 25 4.600 -9.733 36.058 1.00 77.93 ATOM 132 CG ASP C 25 3.892 -10.741 35.191 1.00 76.86 ATOM 133 OD1 ASP C 25 4.446 -11.842 34.985 1.00 74.74 ATOM 134 OD2 ASP C 25 2.798 -10.402 34.677 1.00 78.28 ATOM 135 N GLN C 26 6.314 -8.330 38.161 1.00 73.46 ATOM 136 CA GLN C 26 7.250 -7.234 38.436 1.00 73.99 ATOM 137 C GLN C 26 8.321 -7.560 39.499 1.00 74.49 ATOM 138 O GLN C 26 9.455 -7.038 39.448 1.00 74.34 ATOM 139 CB GLN C 26 6.467 -5.982 38.810 1.00 75.64 ATOM 140 CG GLN C 26 7.337 -4.767 38.837 1.00 76.08 ATOM 141 CD GLN C 26 8.151 -4.613 37.582 1.00 74.47 ATOM 142 OE1 GLN C 26 9.367 -4.390 37.638 1.00 74.23 ATOM 143 NE2 GLN C 26 7.495 -4.739 36.432 1.00 73.49 ATOM 144 N GLN C 27 7.955 -8.410 40.455 1.00 75.21 ATOM 145 CA GLN C 27 8.892 -8.870 41.466 1.00 75.75 ATOM 146 C GLN C 27 9.895 -9.858 40.868 1.00 74.05 ATOM 147 O GLN C 27 11.115 -9.762 41.089 1.00 74.02 ATOM 148 CB GLN C 27 8.150 -9.546 42.612 1.00 77.08 ATOM 149 CG GLN C 27 8.987 -9.837 43.844 1.00 78.16 ATOM 150 CD GLN C 27 8.158 -10.519 44.899 1.00 79.54 ATOM 151 OE1 GLN C 27 7.058 -11.006 44.598 1.00 79.38 ATOM 152 NE2 GLN C 27 8.668 -10.576 46.143 1.00 81.04 ATOM 153 N PHE C 28 9.367 -10.811 40.101 1.00 72.76 ATOM 154 CA PHE C 28 10.211 -11.783 39.401 1.00 71.22 ATOM 155 C PHE C 28 11.180 -11.082 38.471 1.00 70.45 ATOM 156 O PHE C 28 12.379 -11.434 38.439 1.00 70.17 ATOM 157 CB PHE C 28 9.338 -12.776 38.612 1.00 70.13 ATOM 158 CG PHE C 28 9.936 -13.223 37.318 1.00 68.60 ATOM 159 CD1 PHE C 28 11.027 -14.069 37.290 1.00 68.12 ATOM 160 CD2 PHE C 28 9.377 -12.809 36.114 1.00 67.71 ATOM 161 CE1 PHE C 28 11.574 -14.460 36.069 1.00 66.81 ATOM 162 CE2 PHE C 28 9.913 -13.200 34.884 1.00 66.42 ATOM 163 CZ PHE C 28 11.005 -14.029 34.860 1.00 65.97 ATOM 164 N HIS C 29 10.645 -10.058 37.781 1.00 70.27 ATOM 165 CA HIS C 29 11.362 -9.182 36.866 1.00 69.74 ATOM 166 C HIS C 29 12.580 -8.575 37.537 1.00 70.58 ATOM 167 O HIS C 29 13.720 -8.724 37.065 1.00 70.03 ATOM 168 CB HIS C 29 10.401 -8.101 36.377 1.00 70.58 ATOM 169 CG HIS C 29 10.984 -7.148 35.372 1.00 70.09 ATOM 170 ND1 HIS C 29 10.583 -5.831 35.283 1.00 71.00 ATOM 171 CD2 HIS C 29 11.910 -7.326 34.399 1.00 68.96 ATOM 172 CE1 HIS C 29 11.256 -5.235 34.319 1.00 70.38 ATOM 173 NE2 HIS C 29 12.066 -6.121 33.765 1.00 69.13 ATOM 174 N AIB C 30 12.327 -7.893 38.648 1.00 72.16 ATOM 175 CA AIB C 30 13.387 -7.388 39.498 1.00 73.28 ATOM 176 C AIB C 30 14.532 -8.391 39.852 1.00 72.95 ATOM 177 O AIB C 30 15.756 -8.140 39.713 1.00 72.96 ATOM 178 CB1 AIB C 30 14.072 -6.146 38.909 1.00 73.42 ATOM 179 CB2 AIB C 30 12.681 -6.952 40.784 1.00 75.13 ATOM 180 N LYS C 31 14.089 -9.570 40.296 1.00 72.97 ATOM 181 CA LYS C 31 14.966 -10.669 40.687 1.00 72.86 ATOM 182 C LYS C 31 15.950 -11.135 39.607 1.00 71.52 ATOM 183 O LYS C 31 17.098 -11.477 39.916 1.00 71.72 ATOM 184 CB LYS C 31 14.122 -11.845 41.145 1.00 74.08 ATOM 185 N ILE C 32 15.485 -11.218 38.358 1.00 94.99 ATOM 186 CA ILE C 32 16.349 -11.631 37.238 1.00 92.58 ATOM 187 C ILE C 32 17.219 -10.515 36.704 1.00 93.15 ATOM 188 O ILE C 32 17.887 -10.604 35.723 1.00 91.38 ATOM 189 CB ILE C 32 15.557 -12.189 36.051 1.00 88.93 ATOM 190 CG1 ILE C 32 14.566 -11.146 35.557 1.00 88.37 ATOM 191 CG2 ILE C 32 14.882 -13.492 36.426 1.00 88.07 ATOM 192 CD1 ILE C 32 13.377 -11.722 34.907 1.00 85.83 ATOM 193 N TRP C 33 16.790 -9.312 37.050 1.00 94.95 ATOM 194 CA TRP C 33 17.446 -8.149 36.460 1.00 95.40 ATOM 195 C TRP C 33 18.622 -7.716 37.287 1.00 98.64 ATOM 196 O TRP C 33 19.291 -6.733 36.946 1.00 99.56 ATOM 197 CB TRP C 33 16.490 -6.956 36.271 1.00 95.74 ATOM 198 CG TRP C 33 16.196 -6.650 34.822 1.00 92.79 ATOM 199 CD1 TRP C 33 15.034 -6.881 34.152 1.00 90.44 ATOM 200 CD2 TRP C 33 17.122 -6.137 33.854 1.00 91.99 ATOM 201 NE1 TRP C 33 15.161 -6.509 32.834 1.00 88.31 ATOM 202 CE2 TRP C 33 16.433 -6.054 32.624 1.00 89.18 ATOM 203 CE3 TRP C 33 18.457 -5.726 33.912 1.00 93.54 ATOM 204 CZ2 TRP C 33 17.041 -5.571 31.459 1.00 87.89 ATOM 205 CZ3 TRP C 33 19.057 -5.245 32.759 1.00 92.21 ATOM 206 CH2 TRP C 33 18.348 -5.171 31.546 1.00 89.40 ATOM 207 N XPC C 34 18.644 -8.211 38.484 1.00100.87 ATOM 208 CB XPC C 34 19.004 -7.391 39.614 1.00104.86 ATOM 209 CG XPC C 34 17.959 -6.815 40.569 1.00107.10 ATOM 210 ND XPC C 34 18.808 -6.655 41.862 1.00111.30 ATOM 211 CE XPC C 34 20.041 -7.585 41.706 1.00110.80 ATOM 212 CA XPC C 34 19.574 -8.478 40.544 1.00106.35 ATOM 213 C XPC C 34 20.527 -9.467 39.832 1.00104.25 ATOM 214 O XPC C 34 21.738 -9.326 39.906 1.00105.70 ATOM 215 N ILE C 35 19.846 -10.552 39.017 1.00100.46 ATOM 216 CA ILE C 35 21.047 -11.254 38.518 1.00 99.55 ATOM 217 C ILE C 35 21.598 -10.726 37.192 1.00 97.50 ATOM 218 O ILE C 35 22.719 -11.071 36.804 1.00 97.27 ATOM 219 CB ILE C 35 20.790 -12.763 38.312 1.00 97.27 ATOM 220 CG1 ILE C 35 19.741 -13.281 39.299 1.00 98.20 ATOM 221 CG2 ILE C 35 22.088 -13.572 38.351 1.00 97.72 ATOM 222 CD1 ILE C 35 20.174 -13.210 40.763 1.00102.23 ATOM 223 N ILE C 36 20.832 -9.892 36.499 1.00 96.16 ATOM 224 CA ILE C 36 21.367 -9.236 35.317 1.00 94.72 ATOM 225 C ILE C 36 22.196 -7.987 35.721 1.00 97.78 ATOM 226 O ILE C 36 23.097 -7.558 34.994 1.00 97.51 ATOM 227 CB ILE C 36 20.250 -8.848 34.333 1.00 92.11 ATOM 228 N XCP C 37 21.877 -7.391 36.942 1.00100.97 ATOM 229 CB XCP C 37 22.585 -6.200 37.469 1.00104.33 ATOM 230 CG XCP C 37 21.787 -4.875 37.424 1.00105.17 ATOM 231 CD XCP C 37 22.197 -4.047 38.668 1.00109.65 ATOM 232 CE XCP C 37 23.061 -4.952 39.569 1.00111.55 ATOM 233 CA XCP C 37 22.985 -6.378 38.966 1.00108.13 ATOM 234 C XCP C 37 24.296 -7.152 39.044 1.00108.70 ATOM 235 O XCP C 37 25.282 -6.634 39.557 1.00111.70 ATOM 236 N ASP C 38 24.299 -8.444 38.497 1.00105.79 ATOM 237 CA ASP C 38 25.633 -9.031 38.619 1.00106.83 ATOM 238 C ASP C 38 26.185 -9.393 37.236 1.00103.68 ATOM 239 O ASP C 38 27.024 -8.676 36.680 1.00104.13 ATOM 240 CB ASP C 38 25.602 -10.272 39.519 1.00107.62 ATOM 241 N CYS C 39 25.675 -10.475 36.660 1.00101.74 ATOM 242 CA CYS C 39 26.150 -10.898 35.355 1.00 95.64 ATOM 243 C CYS C 39 25.551 -10.031 34.255 1.00 96.71 ATOM 244 O CYS C 39 26.237 -9.189 33.668 1.00 88.94 ATOM 245 CB CYS C 39 25.810 -12.366 35.110 1.00 95.45 ATOM 246 SG CYS C 39 26.561 -13.511 36.281 0.86 93.12 ATOM 247 N NH2 C 40 24.257 -10.231 33.988 1.00 57.39 TER