HEADER PROTEIN BINDING 17-OCT-14 4WPB TITLE Vascular endothelial growth factor in complex with alpha/beta-VEGF-1 COMPND MOL_ID: 2; COMPND 2 MOLECULE: alpha/beta-VEGF-1; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 This is a synthetic designed molecule based initially on the B domain COMPND 6 OTHER_DETAILS: of Staph aureus protein A.; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.11 ANGSTORMS DBREF 4WPB D 1 40 PDB 4WPB 4WPB 1 40 SEQRES 1 D 33 GLU XCP CYS ASN XPC ARG ALA ILE GLU AIB ALA LEU ASP SEQRES 2 D 33 PRO ASN LEU ASN ASP GLN GLN PHE HIS AIB LYS ILE TRP SEQRES 3 D 33 XPC ILE ILE XCP ASP CYS NH2 ATOM 1 N GLU D 8 33.603 8.381 0.893 1.00 63.35 ATOM 2 CA GLU D 8 34.335 9.542 0.396 1.00 63.53 ATOM 3 C GLU D 8 33.903 9.847 -1.027 1.00 63.34 ATOM 4 O GLU D 8 32.731 10.123 -1.295 1.00 62.62 ATOM 5 CB GLU D 8 35.856 9.305 0.429 1.00 67.70 ATOM 6 CG GLU D 8 36.437 8.855 1.774 1.00 68.01 ATOM 7 CD GLU D 8 36.050 7.420 2.151 1.00 68.10 ATOM 8 OE1 GLU D 8 35.542 6.684 1.267 1.00 68.09 ATOM 9 OE2 GLU D 8 36.241 7.030 3.326 1.00 68.22 ATOM 10 N XCP D 9 34.926 9.779 -1.970 1.00 64.08 ATOM 11 CB XCP D 9 34.745 10.031 -3.419 1.00 64.12 ATOM 12 CG XCP D 9 35.276 11.402 -3.861 1.00 64.25 ATOM 13 CD XCP D 9 35.532 11.249 -5.383 1.00 64.71 ATOM 14 CE XCP D 9 35.801 9.753 -5.663 1.00 65.25 ATOM 15 CA XCP D 9 35.523 9.023 -4.339 1.00 65.00 ATOM 16 C XCP D 9 34.700 7.761 -4.507 1.00 64.82 ATOM 17 O XCP D 9 34.245 7.424 -5.590 1.00 64.82 ATOM 18 N CYS D 10 34.505 7.106 -3.427 1.00 64.71 ATOM 19 CA CYS D 10 33.704 5.902 -3.394 1.00 64.59 ATOM 20 C CYS D 10 32.225 6.311 -3.341 1.00 63.56 ATOM 21 O CYS D 10 31.455 5.955 -4.243 1.00 63.34 ATOM 22 CB CYS D 10 34.115 5.021 -2.216 1.00 68.93 ATOM 23 SG CYS D 10 35.881 4.526 -2.255 0.91 70.18 ATOM 24 N ASN D 11 31.830 7.052 -2.294 1.00 62.98 ATOM 25 CA ASN D 11 30.453 7.578 -2.166 1.00 62.04 ATOM 26 C ASN D 11 30.068 8.438 -3.350 1.00 61.68 ATOM 27 O ASN D 11 29.164 8.088 -4.101 1.00 61.33 ATOM 28 CB ASN D 11 30.269 8.398 -0.887 1.00 61.62 ATOM 29 CG ASN D 11 28.811 8.818 -0.663 1.00 60.72 ATOM 30 OD1 ASN D 11 27.874 8.057 -0.940 1.00 60.45 ATOM 31 ND2 ASN D 11 28.618 10.054 -0.211 1.00 60.31 ATOM 32 N XPC D 12 30.760 9.595 -3.497 1.00 61.79 ATOM 33 CB XPC D 12 30.505 10.506 -4.629 1.00 61.54 ATOM 34 CG XPC D 12 30.723 12.000 -4.326 1.00 61.34 ATOM 35 ND XPC D 12 31.818 12.525 -5.279 1.00 62.04 ATOM 36 CE XPC D 12 31.787 11.554 -6.466 1.00 62.36 ATOM 37 CA XPC D 12 31.451 10.202 -5.825 1.00 62.34 ATOM 38 C XPC D 12 30.831 9.216 -6.799 1.00 62.34 ATOM 39 O XPC D 12 29.789 9.481 -7.386 1.00 61.70 ATOM 40 N ARG D 13 31.508 8.031 -6.936 1.00 63.12 ATOM 41 CA ARG D 13 31.072 6.969 -7.836 1.00 63.32 ATOM 42 C ARG D 13 29.645 6.501 -7.583 1.00 62.54 ATOM 43 O ARG D 13 28.846 6.390 -8.508 1.00 62.23 ATOM 44 CB ARG D 13 32.020 5.778 -7.721 1.00 64.30 ATOM 45 N ALA D 14 29.310 6.280 -6.321 1.00 62.23 ATOM 46 CA ALA D 14 27.997 5.757 -5.987 1.00 61.61 ATOM 47 C ALA D 14 26.899 6.775 -6.254 1.00 60.66 ATOM 48 O ALA D 14 25.770 6.424 -6.570 1.00 60.18 ATOM 49 CB ALA D 14 27.964 5.308 -4.541 1.00 61.61 ATOM 50 N ILE D 15 27.220 8.052 -6.109 1.00 56.78 ATOM 51 CA ILE D 15 26.233 9.074 -6.414 1.00 56.64 ATOM 52 C ILE D 15 26.109 9.253 -7.940 1.00 57.57 ATOM 53 O ILE D 15 24.996 9.247 -8.480 1.00 58.35 ATOM 54 CB ILE D 15 26.562 10.393 -5.726 1.00 55.16 ATOM 55 CG1 ILE D 15 26.449 10.178 -4.208 1.00 54.39 ATOM 56 CG2 ILE D 15 25.593 11.448 -6.184 1.00 55.13 ATOM 57 CD1 ILE D 15 26.687 11.396 -3.308 1.00 52.98 ATOM 58 N GLU D 16 27.222 9.344 -8.656 1.00 57.52 ATOM 59 CA GLU D 16 27.104 9.546 -10.095 1.00 58.43 ATOM 60 C GLU D 16 26.402 8.342 -10.790 1.00 59.94 ATOM 61 O GLU D 16 25.563 8.524 -11.665 1.00 60.77 ATOM 62 CB GLU D 16 28.482 9.838 -10.685 1.00 61.54 ATOM 63 CG GLU D 16 29.458 8.660 -10.701 1.00 61.97 ATOM 64 CD GLU D 16 30.816 9.078 -11.266 1.00 61.67 ATOM 65 OE1 GLU D 16 30.971 10.290 -11.570 1.00 61.08 ATOM 66 OE2 GLU D 16 31.708 8.210 -11.405 1.00 62.05 ATOM 67 N AIB D 17 26.717 7.123 -10.382 1.00 60.33 ATOM 68 CA AIB D 17 25.901 5.966 -10.762 1.00 61.66 ATOM 69 C AIB D 17 24.371 6.131 -10.674 1.00 62.08 ATOM 70 O AIB D 17 23.570 5.761 -11.551 1.00 63.28 ATOM 71 CB1 AIB D 17 26.185 5.485 -12.198 1.00 62.91 ATOM 72 CB2 AIB D 17 26.094 4.790 -9.767 1.00 61.70 ATOM 73 N ALA D 18 23.982 6.721 -9.544 1.00 61.04 ATOM 74 CA ALA D 18 22.597 6.782 -9.126 1.00 61.27 ATOM 75 C ALA D 18 21.840 7.828 -9.884 1.00 61.43 ATOM 76 O ALA D 18 20.621 7.767 -9.948 1.00 62.04 ATOM 77 CB ALA D 18 22.511 7.049 -7.638 1.00 60.10 ATOM 78 N LEU D 19 22.574 8.793 -10.433 1.00 60.89 ATOM 79 CA LEU D 19 21.991 9.929 -11.148 1.00 60.94 ATOM 80 C LEU D 19 21.769 9.674 -12.632 1.00 62.32 ATOM 81 O LEU D 19 21.117 10.463 -13.321 1.00 62.65 ATOM 82 CB LEU D 19 22.901 11.135 -10.985 1.00 59.70 ATOM 83 CG LEU D 19 22.955 11.572 -9.541 1.00 58.35 ATOM 84 CD1 LEU D 19 24.006 12.642 -9.362 1.00 57.16 ATOM 85 CD2 LEU D 19 21.567 12.040 -9.141 1.00 58.35 ATOM 86 N ASP D 20 22.280 8.539 -13.103 1.00 63.17 ATOM 87 CA ASP D 20 22.181 8.186 -14.505 1.00 64.53 ATOM 88 C ASP D 20 20.741 7.805 -14.816 1.00 65.67 ATOM 89 O ASP D 20 20.269 6.749 -14.389 1.00 66.22 ATOM 90 CB ASP D 20 23.141 7.036 -14.810 1.00 65.09 ATOM 91 CG ASP D 20 23.375 6.837 -16.289 1.00 66.30 ATOM 92 OD1 ASP D 20 22.447 7.103 -17.078 1.00 67.19 ATOM 93 OD2 ASP D 20 24.493 6.410 -16.658 1.00 66.40 ATOM 94 N PRO D 21 20.046 8.666 -15.583 1.00 66.07 ATOM 95 CA PRO D 21 18.648 8.419 -15.941 1.00 67.19 ATOM 96 C PRO D 21 18.537 7.257 -16.934 1.00 68.81 ATOM 97 O PRO D 21 17.580 6.467 -16.856 1.00 69.73 ATOM 98 CB PRO D 21 18.207 9.745 -16.580 1.00 67.29 ATOM 99 CG PRO D 21 19.467 10.314 -17.182 1.00 66.84 ATOM 100 CD PRO D 21 20.573 9.894 -16.226 1.00 65.76 ATOM 101 N ASN D 22 19.524 7.150 -17.834 1.00 69.16 ATOM 102 CA ASN D 22 19.474 6.193 -18.933 1.00 70.74 ATOM 103 C ASN D 22 19.680 4.763 -18.466 1.00 71.16 ATOM 104 O ASN D 22 19.604 3.845 -19.272 1.00 72.50 ATOM 105 CB ASN D 22 20.518 6.529 -20.018 1.00 70.96 ATOM 106 CG ASN D 22 20.287 7.894 -20.675 1.00 70.81 ATOM 107 OD1 ASN D 22 19.368 8.063 -21.485 1.00 71.90 ATOM 108 ND2 ASN D 22 21.134 8.866 -20.337 1.00 69.51 ATOM 109 N LEU D 23 20.008 4.580 -17.189 1.00 70.04 ATOM 110 CA LEU D 23 20.117 3.240 -16.602 1.00 70.41 ATOM 111 C LEU D 23 18.759 2.729 -16.143 1.00 71.04 ATOM 112 O LEU D 23 17.737 3.405 -16.320 1.00 71.23 ATOM 113 CB LEU D 23 21.088 3.201 -15.412 1.00 69.02 ATOM 114 CG LEU D 23 22.588 3.350 -15.638 1.00 68.43 ATOM 115 CD1 LEU D 23 23.387 3.156 -14.359 1.00 67.22 ATOM 116 CD2 LEU D 23 23.025 2.373 -16.692 1.00 69.75 ATOM 117 N ASN D 24 18.770 1.520 -15.577 1.00 71.42 ATOM 118 CA ASN D 24 17.613 0.919 -14.918 1.00 71.89 ATOM 119 C ASN D 24 18.037 0.446 -13.552 1.00 70.95 ATOM 120 O ASN D 24 19.241 0.295 -13.311 1.00 70.30 ATOM 121 CB ASN D 24 17.093 -0.274 -15.677 1.00 73.61 ATOM 122 CG ASN D 24 18.095 -1.416 -15.684 1.00 73.95 ATOM 123 OD1 ASN D 24 18.245 -2.159 -14.697 1.00 73.65 ATOM 124 ND2 ASN D 24 18.816 -1.547 -16.800 1.00 74.58 ATOM 125 N ASP D 25 17.055 0.111 -12.708 1.00 71.04 ATOM 126 CA ASP D 25 17.319 -0.335 -11.343 1.00 70.22 ATOM 127 C ASP D 25 18.405 -1.405 -11.249 1.00 70.43 ATOM 128 O ASP D 25 19.352 -1.258 -10.483 1.00 69.33 ATOM 129 CB ASP D 25 16.054 -0.923 -10.711 1.00 75.45 ATOM 130 CG ASP D 25 15.101 0.127 -10.156 1.00 74.75 ATOM 131 OD1 ASP D 25 15.526 1.252 -9.787 1.00 73.44 ATOM 132 OD2 ASP D 25 13.901 -0.218 -10.028 1.00 75.54 ATOM 133 N GLN D 26 18.302 -2.442 -12.082 1.00 71.87 ATOM 134 CA GLN D 26 19.171 -3.627 -11.962 1.00 72.27 ATOM 135 C GLN D 26 20.573 -3.412 -12.546 1.00 71.88 ATOM 136 O GLN D 26 21.561 -4.009 -12.091 1.00 71.58 ATOM 137 CB GLN D 26 18.506 -4.833 -12.610 1.00 74.00 ATOM 138 CG GLN D 26 19.118 -6.141 -12.177 1.00 74.43 ATOM 139 CD GLN D 26 19.110 -6.337 -10.651 1.00 73.52 ATOM 140 OE1 GLN D 26 18.235 -5.812 -9.950 1.00 73.03 ATOM 141 NE2 GLN D 26 20.090 -7.097 -10.133 1.00 73.34 ATOM 142 N GLN D 27 20.648 -2.570 -13.566 1.00 71.96 ATOM 143 CA GLN D 27 21.930 -2.236 -14.133 1.00 71.55 ATOM 144 C GLN D 27 22.681 -1.337 -13.191 1.00 69.86 ATOM 145 O GLN D 27 23.847 -1.585 -12.893 1.00 69.33 ATOM 146 CB GLN D 27 21.755 -1.555 -15.480 1.00 72.15 ATOM 147 CG GLN D 27 23.026 -1.349 -16.277 1.00 72.06 ATOM 148 CD GLN D 27 22.716 -0.715 -17.599 1.00 72.79 ATOM 149 OE1 GLN D 27 21.585 -0.260 -17.811 1.00 73.15 ATOM 150 NE2 GLN D 27 23.727 -0.589 -18.469 1.00 72.96 ATOM 151 N PHE D 28 21.993 -0.302 -12.701 1.00 69.03 ATOM 152 CA PHE D 28 22.568 0.614 -11.699 1.00 67.39 ATOM 153 C PHE D 28 22.938 -0.150 -10.427 1.00 66.90 ATOM 154 O PHE D 28 23.979 0.117 -9.818 1.00 65.86 ATOM 155 CB PHE D 28 21.598 1.773 -11.363 1.00 66.73 ATOM 156 CG PHE D 28 21.693 2.240 -9.943 1.00 65.35 ATOM 157 CD1 PHE D 28 22.795 2.949 -9.508 1.00 64.08 ATOM 158 CD2 PHE D 28 20.680 1.950 -9.030 1.00 65.36 ATOM 159 CE1 PHE D 28 22.891 3.335 -8.177 1.00 62.87 ATOM 160 CE2 PHE D 28 20.767 2.342 -7.713 1.00 64.15 ATOM 161 CZ PHE D 28 21.871 3.038 -7.282 1.00 62.90 ATOM 162 N HIS D 29 22.074 -1.100 -10.053 1.00 68.04 ATOM 163 CA HIS D 29 22.298 -1.999 -8.920 1.00 67.87 ATOM 164 C HIS D 29 23.639 -2.714 -9.000 1.00 67.92 ATOM 165 O HIS D 29 24.416 -2.732 -8.028 1.00 67.01 ATOM 166 CB HIS D 29 21.153 -3.015 -8.833 1.00 69.20 ATOM 167 CG HIS D 29 21.304 -4.010 -7.728 1.00 69.20 ATOM 168 ND1 HIS D 29 20.791 -5.290 -7.805 1.00 70.49 ATOM 169 CD2 HIS D 29 21.953 -3.934 -6.544 1.00 68.12 ATOM 170 CE1 HIS D 29 21.103 -5.952 -6.706 1.00 70.20 ATOM 171 NE2 HIS D 29 21.810 -5.152 -5.925 1.00 68.78 ATOM 172 N AIB D 30 23.892 -3.304 -10.163 1.00 69.55 ATOM 173 CA AIB D 30 25.175 -3.911 -10.461 1.00 69.72 ATOM 174 C AIB D 30 26.391 -2.949 -10.322 1.00 68.42 ATOM 175 O AIB D 30 27.466 -3.232 -9.739 1.00 67.87 ATOM 176 CB1 AIB D 30 25.457 -5.151 -9.597 1.00 69.18 ATOM 177 CB2 AIB D 30 25.114 -4.386 -11.921 1.00 70.27 ATOM 178 N LYS D 31 26.168 -1.753 -10.875 1.00 70.56 ATOM 179 CA LYS D 31 27.194 -0.724 -11.012 1.00 69.51 ATOM 180 C LYS D 31 27.743 -0.299 -9.665 1.00 68.10 ATOM 181 O LYS D 31 28.964 -0.170 -9.473 1.00 67.46 ATOM 182 CB LYS D 31 26.621 0.488 -11.745 1.00 66.82 ATOM 183 N ILE D 32 26.817 -0.080 -8.735 1.00 96.70 ATOM 184 CA ILE D 32 27.139 0.373 -7.385 1.00 93.87 ATOM 185 C ILE D 32 27.566 -0.728 -6.427 1.00 93.86 ATOM 186 O ILE D 32 28.360 -0.492 -5.530 1.00 92.99 ATOM 187 CB ILE D 32 25.930 1.096 -6.787 1.00 90.57 ATOM 188 CG1 ILE D 32 26.326 1.915 -5.568 1.00 87.99 ATOM 189 CG2 ILE D 32 24.818 0.116 -6.467 1.00 89.91 ATOM 190 CD1 ILE D 32 25.249 2.850 -5.145 1.00 85.27 ATOM 191 N TRP D 33 27.131 -1.956 -6.676 1.00 95.26 ATOM 192 CA TRP D 33 27.416 -3.033 -5.728 1.00 95.15 ATOM 193 C TRP D 33 28.793 -3.587 -5.959 1.00 98.20 ATOM 194 O TRP D 33 29.385 -4.191 -5.059 1.00 98.17 ATOM 195 CB TRP D 33 26.384 -4.163 -5.831 1.00 95.48 ATOM 196 CG TRP D 33 25.531 -4.247 -4.633 1.00 92.33 ATOM 197 CD1 TRP D 33 24.248 -3.823 -4.516 1.00 90.25 ATOM 198 CD2 TRP D 33 25.907 -4.764 -3.355 1.00 91.10 ATOM 199 NE1 TRP D 33 23.787 -4.045 -3.241 1.00 87.82 ATOM 200 CE2 TRP D 33 24.788 -4.625 -2.502 1.00 88.24 ATOM 201 CE3 TRP D 33 27.078 -5.338 -2.843 1.00 92.38 ATOM 202 CZ2 TRP D 33 24.803 -5.040 -1.157 1.00 86.56 ATOM 203 CZ3 TRP D 33 27.094 -5.752 -1.504 1.00 90.68 ATOM 204 CH2 TRP D 33 25.961 -5.596 -0.680 1.00 87.77 ATOM 205 N XPC D 34 29.304 -3.352 -7.183 1.00101.06 ATOM 206 CB XPC D 34 30.635 -3.813 -7.562 1.00104.58 ATOM 207 CG XPC D 34 30.616 -4.787 -8.749 1.00108.51 ATOM 208 ND XPC D 34 31.848 -4.423 -9.616 1.00112.05 ATOM 209 CE XPC D 34 32.640 -3.422 -8.763 1.00110.10 ATOM 210 CA XPC D 34 31.460 -2.668 -8.148 1.00105.59 ATOM 211 C XPC D 34 31.855 -1.571 -7.188 1.00102.85 ATOM 212 O XPC D 34 32.973 -1.589 -6.682 1.00103.91 ATOM 213 N ILE D 35 30.861 -0.565 -6.964 1.00 99.45 ATOM 214 CA ILE D 35 31.719 0.234 -6.083 1.00 98.26 ATOM 215 C ILE D 35 31.713 -0.155 -4.610 1.00 96.14 ATOM 216 O ILE D 35 32.554 0.326 -3.856 1.00 95.82 ATOM 217 CB ILE D 35 31.369 1.733 -6.194 1.00 96.14 ATOM 218 N ILE D 36 30.783 -1.009 -4.198 1.00 94.89 ATOM 219 CA ILE D 36 30.796 -1.522 -2.827 1.00 93.27 ATOM 220 C ILE D 36 31.725 -2.741 -2.677 1.00 96.05 ATOM 221 O ILE D 36 32.765 -2.674 -2.014 1.00 96.81 ATOM 222 CB ILE D 36 29.368 -1.887 -2.350 1.00 90.71 ATOM 223 CG1 ILE D 36 28.489 -0.637 -2.332 1.00 88.07 ATOM 224 CG2 ILE D 36 29.395 -2.512 -0.960 1.00 89.35 ATOM 225 CD1 ILE D 36 27.079 -0.892 -1.860 1.00 85.79 ATOM 226 N XCP D 37 31.349 -3.839 -3.291 1.00 97.77 ATOM 227 CB XCP D 37 32.145 -5.074 -3.233 1.00100.72 ATOM 228 CG XCP D 37 31.253 -6.324 -3.043 1.00100.47 ATOM 229 CD XCP D 37 31.653 -7.351 -4.125 1.00104.64 ATOM 230 CE XCP D 37 33.028 -6.881 -4.629 1.00107.52 ATOM 231 CA XCP D 37 32.979 -5.346 -4.514 1.00104.98 ATOM 232 C XCP D 37 34.362 -4.709 -4.456 1.00106.75 ATOM 233 O XCP D 37 35.361 -5.402 -4.340 1.00109.67 ATOM 234 N ASP D 38 34.402 -3.358 -4.537 1.00105.11 ATOM 235 CA ASP D 38 35.783 -2.877 -4.471 1.00107.27 ATOM 236 C ASP D 38 35.989 -1.970 -3.248 1.00104.46 ATOM 237 O ASP D 38 36.634 -2.372 -2.276 1.00104.87 ATOM 238 CB ASP D 38 36.171 -2.151 -5.769 1.00109.48 ATOM 239 N CYS D 39 35.424 -0.764 -3.287 1.00 86.77 ATOM 240 CA CYS D 39 35.588 0.193 -2.192 1.00 89.43 ATOM 241 C CYS D 39 34.765 -0.133 -0.930 1.00 89.16 ATOM 242 O CYS D 39 35.251 0.018 0.198 1.00 77.65 ATOM 243 CB CYS D 39 35.225 1.600 -2.679 1.00 80.95 ATOM 244 SG CYS D 39 35.154 2.853 -1.370 0.35 88.57 ATOM 245 N NH2 D 40 33.505 -0.574 -1.129 1.00 62.01 TER