HEADER PROTEIN BINDING/METAL BINDING PROTEIN 12-JAN-15 4XKL TITLE Crystal structure of NDP52 ZF2 in complex with mono-ubiquitin COMPND MOL_ID: 2; COMPND 2 MOLECULE: Calcium-binding and coiled-coil domain-containing protein COMPND 3 CHAIN: B, D; COMPND 4 FRAGMENT: Zinc finger, UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.10 ANGSTORMS DBREF 4XKL D 414 446 UNP Q13137 CACO2_HUMAN 414 446 SEQRES 1 D 31 GLN PRO LEU CYS PHE ASN CYS PRO ILE CYS ASP LYS ILE SEQRES 2 D 31 PHE PRO ALA THR GLU LYS GLN ILE PHE GLU ASP HIS VAL SEQRES 3 D 31 PHE CYS HIS SER LEU ATOM 1 N GLN D 416 63.650 -21.959 58.983 1.00 57.05 ATOM 2 CA GLN D 416 63.533 -22.865 60.166 1.00 60.91 ATOM 3 C GLN D 416 64.281 -24.224 60.079 1.00 57.52 ATOM 4 O GLN D 416 63.909 -25.171 60.773 1.00 63.74 ATOM 5 CB GLN D 416 62.041 -23.088 60.458 1.00 58.33 ATOM 6 CG GLN D 416 61.715 -23.661 61.833 1.00 69.97 ATOM 7 CD GLN D 416 60.268 -24.123 61.949 1.00 74.09 ATOM 8 OE1 GLN D 416 59.957 -25.312 61.806 1.00 59.62 ATOM 9 NE2 GLN D 416 59.366 -23.172 62.164 1.00 77.25 ATOM 10 N PRO D 417 65.399 -24.317 59.326 1.00 54.16 ATOM 11 CA PRO D 417 66.205 -25.520 59.555 1.00 53.24 ATOM 12 C PRO D 417 67.312 -25.320 60.595 1.00 41.29 ATOM 13 O PRO D 417 67.961 -24.275 60.613 1.00 37.33 ATOM 14 CB PRO D 417 66.829 -25.786 58.183 1.00 48.19 ATOM 15 CG PRO D 417 66.986 -24.435 57.590 1.00 52.75 ATOM 16 CD PRO D 417 65.885 -23.570 58.152 1.00 47.76 ATOM 17 N LEU D 418 67.559 -26.350 61.397 1.00 31.85 ATOM 18 CA LEU D 418 68.651 -26.373 62.375 1.00 37.68 ATOM 19 C LEU D 418 70.041 -26.368 61.709 1.00 33.30 ATOM 20 O LEU D 418 70.897 -25.522 61.993 1.00 35.10 ATOM 21 CB LEU D 418 68.506 -27.647 63.217 1.00 47.37 ATOM 22 CG LEU D 418 68.434 -27.598 64.746 1.00 47.65 ATOM 23 CD1 LEU D 418 67.364 -26.644 65.256 1.00 38.84 ATOM 24 CD2 LEU D 418 68.213 -29.012 65.270 1.00 55.62 ATOM 25 N CYS D 419 70.249 -27.313 60.801 1.00 27.60 ATOM 26 CA CYS D 419 71.500 -27.384 60.052 1.00 32.87 ATOM 27 C CYS D 419 71.317 -27.401 58.536 1.00 32.80 ATOM 28 O CYS D 419 70.325 -27.926 58.031 1.00 31.33 ATOM 29 CB CYS D 419 72.261 -28.630 60.476 1.00 32.91 ATOM 30 SG CYS D 419 72.974 -28.447 62.129 1.00 35.55 ATOM 31 N PHE D 420 72.331 -26.893 57.836 1.00 38.64 ATOM 32 CA PHE D 420 72.522 -27.134 56.404 1.00 41.04 ATOM 33 C PHE D 420 73.488 -28.298 56.169 1.00 37.41 ATOM 34 O PHE D 420 74.417 -28.505 56.949 1.00 32.01 ATOM 35 CB PHE D 420 73.139 -25.900 55.737 1.00 46.24 ATOM 36 CG PHE D 420 72.410 -24.607 55.999 1.00 43.56 ATOM 37 CD1 PHE D 420 71.031 -24.535 55.881 1.00 46.11 ATOM 38 CD2 PHE D 420 73.127 -23.432 56.187 1.00 38.10 ATOM 39 CE1 PHE D 420 70.371 -23.337 56.083 1.00 48.53 ATOM 40 CE2 PHE D 420 72.480 -22.237 56.406 1.00 43.13 ATOM 41 CZ PHE D 420 71.099 -22.182 56.319 1.00 55.01 ATOM 42 N ASN D 421 73.374 -28.949 55.015 1.00 30.39 ATOM 43 CA ASN D 421 74.493 -29.727 54.497 1.00 31.45 ATOM 44 C ASN D 421 74.981 -29.288 53.106 1.00 32.84 ATOM 45 O ASN D 421 74.209 -28.833 52.250 1.00 23.36 ATOM 46 CB ASN D 421 74.187 -31.217 54.510 1.00 28.71 ATOM 47 CG ASN D 421 73.439 -31.661 53.285 1.00 35.43 ATOM 48 OD1 ASN D 421 72.216 -31.572 53.237 1.00 49.09 ATOM 49 ND2 ASN D 421 74.162 -32.153 52.287 1.00 44.53 ATOM 50 N CYS D 422 76.292 -29.391 52.911 1.00 27.24 ATOM 51 CA CYS D 422 76.889 -29.117 51.607 1.00 28.37 ATOM 52 C CYS D 422 76.524 -30.216 50.605 1.00 24.72 ATOM 53 O CYS D 422 76.696 -31.392 50.893 1.00 20.03 ATOM 54 CB CYS D 422 78.401 -29.070 51.711 1.00 25.65 ATOM 55 SG CYS D 422 79.167 -29.038 50.084 1.00 17.26 ATOM 56 N PRO D 423 76.014 -29.832 49.429 1.00 27.41 ATOM 57 CA PRO D 423 75.567 -30.801 48.443 1.00 29.20 ATOM 58 C PRO D 423 76.700 -31.431 47.638 1.00 30.05 ATOM 59 O PRO D 423 76.451 -32.205 46.708 1.00 31.92 ATOM 60 CB PRO D 423 74.690 -29.961 47.517 1.00 27.34 ATOM 61 CG PRO D 423 75.313 -28.621 47.558 1.00 27.68 ATOM 62 CD PRO D 423 75.847 -28.445 48.955 1.00 32.01 ATOM 63 N ILE D 424 77.946 -31.117 47.975 1.00 27.86 ATOM 64 CA ILE D 424 79.057 -31.597 47.163 1.00 20.31 ATOM 65 C ILE D 424 79.822 -32.639 47.948 1.00 22.19 ATOM 66 O ILE D 424 80.228 -33.660 47.384 1.00 24.61 ATOM 67 CB ILE D 424 79.956 -30.423 46.726 1.00 24.86 ATOM 68 CG1 ILE D 424 79.142 -29.459 45.859 1.00 23.80 ATOM 69 CG2 ILE D 424 81.187 -30.922 45.991 1.00 20.76 ATOM 70 CD1 ILE D 424 79.867 -28.157 45.595 1.00 25.56 ATOM 71 N CYS D 425 79.945 -32.421 49.258 1.00 18.04 ATOM 72 CA CYS D 425 80.762 -33.292 50.121 1.00 19.45 ATOM 73 C CYS D 425 80.036 -33.847 51.356 1.00 21.19 ATOM 74 O CYS D 425 80.565 -34.689 52.100 1.00 19.85 ATOM 75 CB CYS D 425 82.023 -32.553 50.575 1.00 16.38 ATOM 76 SG CYS D 425 81.807 -31.355 51.918 1.00 16.54 ATOM 77 N ASP D 426 78.842 -33.331 51.593 1.00 21.00 ATOM 78 CA ASP D 426 77.979 -33.780 52.682 1.00 25.45 ATOM 79 C ASP D 426 78.459 -33.380 54.075 1.00 26.98 ATOM 80 O ASP D 426 77.931 -33.842 55.072 1.00 32.10 ATOM 81 CB ASP D 426 77.697 -35.274 52.566 1.00 22.82 ATOM 82 CG ASP D 426 76.817 -35.601 51.361 1.00 35.40 ATOM 83 OD1 ASP D 426 76.010 -34.718 50.955 1.00 31.12 ATOM 84 OD2 ASP D 426 77.022 -36.680 50.746 1.00 37.19 ATOM 85 N LYS D 427 79.207 -32.295 54.146 1.00 26.44 ATOM 86 CA LYS D 427 79.481 -31.668 55.427 1.00 24.60 ATOM 87 C LYS D 427 78.259 -30.928 55.966 1.00 24.55 ATOM 88 O LYS D 427 77.529 -30.295 55.203 1.00 18.90 ATOM 89 CB LYS D 427 80.634 -30.691 55.270 1.00 20.51 ATOM 90 CG LYS D 427 81.210 -30.262 56.595 1.00 25.78 ATOM 91 CD LYS D 427 82.411 -29.367 56.401 1.00 30.67 ATOM 92 CE LYS D 427 83.165 -29.159 57.705 1.00 41.66 ATOM 93 NZ LYS D 427 84.395 -28.363 57.436 1.00 44.88 ATOM 94 N ILE D 428 78.078 -30.967 57.290 1.00 22.02 ATOM 95 CA ILE D 428 76.962 -30.287 57.956 1.00 22.65 ATOM 96 C ILE D 428 77.415 -28.987 58.632 1.00 23.27 ATOM 97 O ILE D 428 78.485 -28.899 59.274 1.00 23.91 ATOM 98 CB ILE D 428 76.298 -31.190 59.020 1.00 30.47 ATOM 99 CG1 ILE D 428 75.861 -32.515 58.401 1.00 32.92 ATOM 100 CG2 ILE D 428 75.121 -30.490 59.683 1.00 32.49 ATOM 101 CD1 ILE D 428 75.347 -33.524 59.407 1.00 33.29 ATOM 102 N PHE D 429 76.603 -27.964 58.458 1.00 15.78 ATOM 103 CA PHE D 429 76.856 -26.673 59.066 1.00 21.35 ATOM 104 C PHE D 429 75.617 -26.226 59.836 1.00 20.17 ATOM 105 O PHE D 429 74.494 -26.426 59.378 1.00 25.57 ATOM 106 CB PHE D 429 77.194 -25.643 57.987 1.00 22.80 ATOM 107 CG PHE D 429 78.549 -25.852 57.367 1.00 27.20 ATOM 108 CD1 PHE D 429 78.741 -26.814 56.379 1.00 28.70 ATOM 109 CD2 PHE D 429 79.643 -25.105 57.773 1.00 24.27 ATOM 110 CE1 PHE D 429 79.997 -27.010 55.817 1.00 26.85 ATOM 111 CE2 PHE D 429 80.886 -25.281 57.194 1.00 22.73 ATOM 112 CZ PHE D 429 81.088 -26.291 56.278 1.00 22.84 ATOM 113 N PRO D 430 75.820 -25.585 60.992 1.00 30.16 ATOM 114 CA PRO D 430 74.696 -25.022 61.721 1.00 27.26 ATOM 115 C PRO D 430 74.185 -23.807 60.982 1.00 32.19 ATOM 116 O PRO D 430 74.974 -22.952 60.583 1.00 30.86 ATOM 117 CB PRO D 430 75.315 -24.609 63.049 1.00 29.83 ATOM 118 CG PRO D 430 76.732 -24.293 62.716 1.00 30.83 ATOM 119 CD PRO D 430 77.115 -25.215 61.596 1.00 30.37 ATOM 120 N ALA D 431 72.870 -23.719 60.860 1.00 35.43 ATOM 121 CA ALA D 431 72.216 -22.605 60.176 1.00 40.68 ATOM 122 C ALA D 431 72.546 -21.211 60.713 1.00 39.41 ATOM 123 O ALA D 431 72.348 -20.218 60.011 1.00 45.47 ATOM 124 CB ALA D 431 70.708 -22.819 60.193 1.00 47.98 ATOM 125 N THR D 432 73.045 -21.122 61.944 1.00 55.33 ATOM 126 CA THR D 432 73.431 -19.825 62.501 1.00 53.62 ATOM 127 C THR D 432 74.577 -19.156 61.730 1.00 56.65 ATOM 128 O THR D 432 74.742 -17.937 61.832 1.00 51.92 ATOM 129 CB THR D 432 73.838 -19.903 63.986 1.00 53.89 ATOM 130 OG1 THR D 432 75.059 -20.640 64.126 1.00 52.97 ATOM 131 CG2 THR D 432 72.738 -20.528 64.822 1.00 56.89 ATOM 132 N GLU D 433 75.367 -19.934 60.983 1.00 53.00 ATOM 133 CA GLU D 433 76.477 -19.371 60.197 1.00 57.64 ATOM 134 C GLU D 433 76.290 -19.526 58.681 1.00 51.06 ATOM 135 O GLU D 433 76.842 -20.447 58.074 1.00 51.85 ATOM 136 CB GLU D 433 77.845 -19.931 60.628 1.00 50.46 ATOM 137 CG GLU D 433 77.870 -21.420 60.961 1.00 51.54 ATOM 138 CD GLU D 433 79.102 -21.844 61.766 1.00 70.68 ATOM 139 OE1 GLU D 433 80.097 -22.364 61.181 1.00 38.82 ATOM 140 OE2 GLU D 433 79.064 -21.684 63.012 1.00 59.70 ATOM 141 N LYS D 434 75.637 -18.531 58.077 1.00 44.22 ATOM 142 CA LYS D 434 75.276 -18.535 56.659 1.00 37.22 ATOM 143 C LYS D 434 76.500 -18.235 55.809 1.00 30.64 ATOM 144 O LYS D 434 76.748 -18.921 54.820 1.00 27.06 ATOM 145 CB LYS D 434 74.188 -17.478 56.360 1.00 43.08 ATOM 146 CG LYS D 434 74.545 -16.046 56.787 1.00 44.74 ATOM 147 CD LYS D 434 73.639 -14.965 56.184 1.00 44.10 ATOM 148 CE LYS D 434 74.132 -14.411 54.852 1.00 44.03 ATOM 149 NZ LYS D 434 73.467 -15.028 53.668 1.00 43.05 ATOM 150 N GLN D 435 77.253 -17.211 56.207 1.00 28.81 ATOM 151 CA GLN D 435 78.421 -16.794 55.458 1.00 29.83 ATOM 152 C GLN D 435 79.468 -17.928 55.446 1.00 31.21 ATOM 153 O GLN D 435 80.038 -18.236 54.397 1.00 35.72 ATOM 154 CB GLN D 435 78.991 -15.508 56.061 1.00 26.48 ATOM 155 CG GLN D 435 80.452 -15.212 55.725 1.00 21.28 ATOM 156 CD GLN D 435 81.407 -15.637 56.832 1.00 25.17 ATOM 157 OE1 GLN D 435 81.139 -15.421 58.019 1.00 21.19 ATOM 158 NE2 GLN D 435 82.567 -16.170 56.447 1.00 20.88 ATOM 159 N ILE D 436 79.654 -18.618 56.570 1.00 26.60 ATOM 160 CA ILE D 436 80.650 -19.700 56.623 1.00 25.60 ATOM 161 C ILE D 436 80.295 -20.883 55.712 1.00 18.83 ATOM 162 O ILE D 436 81.128 -21.384 54.981 1.00 17.46 ATOM 163 CB ILE D 436 80.867 -20.170 58.071 1.00 32.30 ATOM 164 CG1 ILE D 436 81.597 -19.079 58.859 1.00 29.37 ATOM 165 CG2 ILE D 436 81.625 -21.490 58.098 1.00 32.16 ATOM 166 CD1 ILE D 436 81.390 -19.151 60.352 1.00 28.30 ATOM 167 N PHE D 437 79.030 -21.277 55.711 1.00 18.62 ATOM 168 CA PHE D 437 78.538 -22.323 54.821 1.00 18.29 ATOM 169 C PHE D 437 78.711 -21.952 53.357 1.00 20.46 ATOM 170 O PHE D 437 79.166 -22.773 52.539 1.00 19.87 ATOM 171 CB PHE D 437 77.050 -22.571 55.098 1.00 21.09 ATOM 172 CG PHE D 437 76.396 -23.555 54.165 1.00 20.32 ATOM 173 CD1 PHE D 437 76.776 -24.900 54.162 1.00 28.49 ATOM 174 CD2 PHE D 437 75.431 -23.141 53.271 1.00 22.94 ATOM 175 CE1 PHE D 437 76.159 -25.806 53.330 1.00 23.76 ATOM 176 CE2 PHE D 437 74.891 -24.024 52.355 1.00 23.25 ATOM 177 CZ PHE D 437 75.213 -25.364 52.420 1.00 26.13 ATOM 178 N GLU D 438 78.196 -20.776 53.007 1.00 19.63 ATOM 179 CA GLU D 438 78.238 -20.283 51.639 1.00 18.21 ATOM 180 C GLU D 438 79.675 -20.187 51.142 1.00 17.90 ATOM 181 O GLU D 438 79.971 -20.534 49.988 1.00 15.28 ATOM 182 CB GLU D 438 77.555 -18.919 51.579 1.00 24.21 ATOM 183 CG GLU D 438 76.059 -19.021 51.855 1.00 28.03 ATOM 184 CD GLU D 438 75.344 -17.687 51.731 1.00 42.66 ATOM 185 OE1 GLU D 438 75.783 -16.706 52.376 1.00 61.05 ATOM 186 OE2 GLU D 438 74.318 -17.624 51.019 1.00 60.18 ATOM 187 N ASP D 439 80.579 -19.773 52.021 1.00 12.93 ATOM 188 CA ASP D 439 81.989 -19.756 51.663 1.00 17.08 ATOM 189 C ASP D 439 82.548 -21.146 51.402 1.00 16.95 ATOM 190 O ASP D 439 83.346 -21.320 50.478 1.00 16.67 ATOM 191 CB ASP D 439 82.855 -19.104 52.733 1.00 16.70 ATOM 192 CG ASP D 439 82.770 -17.602 52.705 1.00 20.69 ATOM 193 OD1 ASP D 439 82.227 -17.111 51.693 1.00 23.26 ATOM 194 OD2 ASP D 439 83.242 -16.944 53.680 1.00 18.45 ATOM 195 N HIS D 440 82.221 -22.083 52.286 1.00 16.66 ATOM 196 CA HIS D 440 82.539 -23.477 52.066 1.00 15.30 ATOM 197 C HIS D 440 82.107 -23.940 50.666 1.00 16.76 ATOM 198 O HIS D 440 82.909 -24.555 49.968 1.00 12.94 ATOM 199 CB HIS D 440 81.935 -24.361 53.180 1.00 16.28 ATOM 200 CG HIS D 440 81.918 -25.825 52.844 1.00 14.49 ATOM 201 ND1 HIS D 440 82.912 -26.687 53.260 1.00 12.74 ATOM 202 CD2 HIS D 440 81.140 -26.530 51.985 1.00 13.45 ATOM 203 CE1 HIS D 440 82.727 -27.866 52.691 1.00 14.51 ATOM 204 NE2 HIS D 440 81.707 -27.775 51.851 1.00 13.21 ATOM 205 N VAL D 441 80.825 -23.771 50.315 1.00 16.08 ATOM 206 CA VAL D 441 80.333 -24.191 49.022 1.00 16.89 ATOM 207 C VAL D 441 81.061 -23.492 47.867 1.00 18.40 ATOM 208 O VAL D 441 81.337 -24.133 46.848 1.00 17.75 ATOM 209 CB VAL D 441 78.812 -23.961 48.878 1.00 22.59 ATOM 210 CG1 VAL D 441 78.356 -24.270 47.460 1.00 22.75 ATOM 211 CG2 VAL D 441 78.067 -24.871 49.838 1.00 21.25 ATOM 212 N PHE D 442 81.346 -22.197 48.035 1.00 16.49 ATOM 213 CA PHE D 442 82.190 -21.384 47.137 1.00 17.96 ATOM 214 C PHE D 442 83.620 -21.921 46.956 1.00 17.07 ATOM 215 O PHE D 442 84.112 -22.053 45.824 1.00 17.38 ATOM 216 CB PHE D 442 82.264 -19.936 47.644 1.00 18.49 ATOM 217 CG PHE D 442 83.226 -19.067 46.878 1.00 21.45 ATOM 218 CD1 PHE D 442 82.959 -18.695 45.560 1.00 28.79 ATOM 219 CD2 PHE D 442 84.415 -18.637 47.457 1.00 22.94 ATOM 220 CE1 PHE D 442 83.879 -17.949 44.839 1.00 26.39 ATOM 221 CE2 PHE D 442 85.331 -17.896 46.737 1.00 22.12 ATOM 222 CZ PHE D 442 85.032 -17.493 45.455 1.00 24.97 ATOM 223 N CYS D 443 84.201 -22.416 48.037 1.00 13.88 ATOM 224 CA CYS D 443 85.544 -22.988 47.947 1.00 17.07 ATOM 225 C CYS D 443 85.640 -24.241 47.077 1.00 14.57 ATOM 226 O CYS D 443 86.695 -24.530 46.537 1.00 12.97 ATOM 227 CB CYS D 443 86.113 -23.258 49.340 1.00 13.49 ATOM 228 SG CYS D 443 86.446 -21.741 50.246 1.00 13.45 ATOM 229 N HIS D 444 84.553 -24.995 46.955 1.00 15.74 ATOM 230 CA HIS D 444 84.489 -26.118 46.016 1.00 15.09 ATOM 231 C HIS D 444 84.820 -25.721 44.571 1.00 15.83 ATOM 232 O HIS D 444 85.362 -26.532 43.814 1.00 17.84 ATOM 233 CB HIS D 444 83.110 -26.805 46.051 1.00 17.14 ATOM 234 CG HIS D 444 82.963 -27.786 47.177 1.00 17.37 ATOM 235 ND1 HIS D 444 83.830 -28.843 47.342 1.00 17.65 ATOM 236 CD2 HIS D 444 82.215 -27.743 48.303 1.00 14.12 ATOM 237 CE1 HIS D 444 83.551 -29.471 48.468 1.00 14.87 ATOM 238 NE2 HIS D 444 82.538 -28.854 49.044 1.00 15.26 ATOM 239 N SER D 445 84.535 -24.471 44.222 1.00 16.09 ATOM 240 CA SER D 445 84.690 -24.002 42.848 0.13 18.02 ATOM 241 C SER D 445 86.135 -23.671 42.472 1.00 20.33 ATOM 242 O SER D 445 86.434 -23.461 41.281 1.00 18.07 ATOM 243 CB SER D 445 83.814 -22.771 42.613 0.13 17.76 ATOM 244 OG SER D 445 82.445 -23.115 42.712 0.13 17.30 ATOM 245 N LEU D 446 87.018 -23.576 43.477 1.00 19.24 ATOM 246 CA LEU D 446 88.409 -23.145 43.269 1.00 25.80 ATOM 247 C LEU D 446 89.448 -24.282 43.244 1.00 36.52 ATOM 248 O LEU D 446 89.266 -25.450 43.670 1.00 28.50 ATOM 249 CB LEU D 446 88.825 -22.138 44.350 1.00 24.58 ATOM 250 CG LEU D 446 87.752 -21.107 44.686 1.00 20.94 ATOM 251 CD1 LEU D 446 88.299 -20.231 45.802 1.00 21.55 ATOM 252 CD2 LEU D 446 87.429 -20.293 43.438 1.00 19.47 ATOM 253 OXT LEU D 446 90.559 -23.972 42.791 1.00 43.18 TER