HEADER Hydrolase/Hydrolase Inhibitor 22-APR-15 4ZG9 TITLE Structural basis for inhibition of human autotaxin by four novel TITLE 2 compounds COMPND MOL_ID: 1; COMPND 2 MOLECULE: Ectonucleotide pyrophosphatase/phosphodiesterase family COMPND 3 member 2; COMPND 4 CHAIN: A, B; COMPND 5 EC: 3.1.4.39; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.95 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 68 REMARK 465 ALA A 69 REMARK 465 GLY A 70 REMARK 465 PRO A 71 DBREF 4ZG9 A 1 863 UNP Q13822 ENPP2_HUMAN 1 863 SEQRES 1 A 39 SER CYS LYS GLY ARG CYS PHE GLU LEU GLN GLU ALA GLY SEQRES 2 A 39 PRO PRO ASP CYS ARG CYS ASP ASN LEU CYS LYS SER TYR SEQRES 3 A 39 THR SER CYS CYS HIS ASP PHE ASP GLU LEU CYS LEU LYS ATOM 1 N SER A 58 53.101 68.056 6.900 1.00100.23 ATOM 2 CA SER A 58 53.290 68.646 5.535 1.00102.96 ATOM 3 C SER A 58 53.606 67.584 4.446 1.00111.11 ATOM 4 O SER A 58 54.031 66.459 4.754 1.00100.25 ATOM 5 CB SER A 58 54.377 69.727 5.577 1.00 97.92 ATOM 6 OG SER A 58 54.983 69.894 4.308 1.00 92.66 ATOM 7 N CYS A 59 53.384 67.960 3.180 1.00119.19 ATOM 8 CA CYS A 59 53.580 67.064 2.022 1.00119.60 ATOM 9 C CYS A 59 54.950 67.226 1.358 1.00129.82 ATOM 10 O CYS A 59 55.275 66.465 0.448 1.00141.75 ATOM 11 CB CYS A 59 52.471 67.254 0.965 1.00114.71 ATOM 12 SG CYS A 59 51.030 66.140 1.059 1.00120.61 ATOM 13 N LYS A 60 55.731 68.218 1.802 1.00130.58 ATOM 14 CA LYS A 60 57.105 68.481 1.311 1.00123.61 ATOM 15 C LYS A 60 57.363 68.082 -0.159 1.00117.26 ATOM 16 O LYS A 60 57.199 68.893 -1.065 1.00110.92 ATOM 17 CB LYS A 60 58.130 67.817 2.242 1.00119.81 ATOM 18 N GLY A 61 57.781 66.837 -0.375 1.00112.64 ATOM 19 CA GLY A 61 57.901 66.258 -1.715 1.00107.16 ATOM 20 C GLY A 61 57.426 64.813 -1.692 1.00106.60 ATOM 21 O GLY A 61 57.977 63.957 -2.388 1.00100.06 ATOM 22 N ARG A 62 56.387 64.558 -0.891 1.00106.06 ATOM 23 CA ARG A 62 55.807 63.220 -0.698 1.00105.11 ATOM 24 C ARG A 62 54.507 63.139 -1.499 1.00108.69 ATOM 25 O ARG A 62 53.678 62.240 -1.309 1.00104.27 ATOM 26 CB ARG A 62 55.488 62.971 0.782 1.00 98.59 ATOM 27 CG ARG A 62 56.386 63.676 1.801 1.00 99.17 ATOM 28 CD ARG A 62 55.625 63.972 3.092 1.00 99.40 ATOM 29 NE ARG A 62 54.767 62.838 3.478 1.00 98.54 ATOM 30 CZ ARG A 62 53.499 62.917 3.895 1.00 94.30 ATOM 31 NH1 ARG A 62 52.844 61.798 4.195 1.00 90.06 ATOM 32 NH2 ARG A 62 52.878 64.092 4.036 1.00101.95 ATOM 33 N CYS A 63 54.366 64.080 -2.423 1.00113.74 ATOM 34 CA CYS A 63 53.079 64.473 -2.941 1.00112.82 ATOM 35 C CYS A 63 52.578 63.548 -4.060 1.00105.26 ATOM 36 O CYS A 63 53.323 63.200 -4.969 1.00107.10 ATOM 37 CB CYS A 63 53.174 65.923 -3.401 1.00116.10 ATOM 38 SG CYS A 63 51.705 66.447 -4.274 1.00142.32 ATOM 39 N PHE A 64 51.303 63.172 -3.969 1.00 97.66 ATOM 40 CA PHE A 64 50.672 62.164 -4.836 1.00 91.52 ATOM 41 C PHE A 64 51.267 60.766 -4.664 1.00 91.80 ATOM 42 O PHE A 64 51.376 60.002 -5.617 1.00 93.33 ATOM 43 CB PHE A 64 50.674 62.603 -6.314 1.00 85.15 ATOM 44 CG PHE A 64 49.590 63.581 -6.643 1.00 77.51 ATOM 45 CD1 PHE A 64 48.261 63.242 -6.444 1.00 74.31 ATOM 46 CD2 PHE A 64 49.891 64.836 -7.135 1.00 75.23 ATOM 47 CE1 PHE A 64 47.253 64.139 -6.724 1.00 74.17 ATOM 48 CE2 PHE A 64 48.885 65.745 -7.425 1.00 75.61 ATOM 49 CZ PHE A 64 47.565 65.398 -7.217 1.00 74.91 ATOM 50 N GLU A 65 51.620 60.429 -3.429 1.00 94.12 ATOM 51 CA GLU A 65 52.261 59.153 -3.132 1.00 95.85 ATOM 52 C GLU A 65 51.289 57.966 -3.264 1.00 95.44 ATOM 53 O GLU A 65 50.079 58.108 -3.060 1.00 89.14 ATOM 54 CB GLU A 65 52.877 59.189 -1.727 1.00102.35 ATOM 55 N LEU A 66 51.843 56.800 -3.596 1.00 92.73 ATOM 56 CA LEU A 66 51.063 55.580 -3.795 1.00 88.50 ATOM 57 C LEU A 66 50.556 54.974 -2.476 1.00 87.14 ATOM 58 O LEU A 66 49.514 54.328 -2.475 1.00 75.73 ATOM 59 CB LEU A 66 51.877 54.548 -4.601 1.00 85.69 ATOM 60 N GLN A 67 51.279 55.178 -1.366 1.00101.01 ATOM 61 CA GLN A 67 50.848 54.694 -0.021 1.00101.42 ATOM 62 C GLN A 67 50.282 55.838 0.853 1.00 91.45 ATOM 63 O GLN A 67 49.154 55.760 1.355 1.00 67.89 ATOM 64 CB GLN A 67 52.008 53.983 0.705 1.00 93.56 ATOM 65 N PRO A 72 47.163 57.630 10.266 1.00138.13 ATOM 66 CA PRO A 72 47.662 58.321 11.467 1.00138.21 ATOM 67 C PRO A 72 48.191 59.749 11.206 1.00130.23 ATOM 68 O PRO A 72 48.106 60.615 12.082 1.00112.16 ATOM 69 CB PRO A 72 48.797 57.397 11.968 1.00141.35 ATOM 70 CG PRO A 72 49.137 56.500 10.816 1.00138.63 ATOM 71 CD PRO A 72 47.880 56.360 10.011 1.00136.07 ATOM 72 N ASP A 73 48.716 59.990 10.006 1.00126.53 ATOM 73 CA ASP A 73 49.458 61.220 9.715 1.00119.39 ATOM 74 C ASP A 73 48.653 62.207 8.875 1.00114.80 ATOM 75 O ASP A 73 47.456 62.038 8.664 1.00 99.74 ATOM 76 CB ASP A 73 50.764 60.879 8.980 1.00110.61 ATOM 77 CG ASP A 73 51.493 59.706 9.596 1.00109.43 ATOM 78 OD1 ASP A 73 51.297 59.417 10.803 1.00109.49 ATOM 79 OD2 ASP A 73 52.268 59.074 8.857 1.00 96.79 ATOM 80 N CYS A 74 49.333 63.258 8.426 1.00121.35 ATOM 81 CA CYS A 74 48.813 64.144 7.392 1.00122.24 ATOM 82 C CYS A 74 49.024 63.430 6.032 1.00115.74 ATOM 83 O CYS A 74 50.094 62.871 5.765 1.00103.67 ATOM 84 CB CYS A 74 49.506 65.525 7.484 1.00131.47 ATOM 85 SG CYS A 74 50.747 65.863 6.202 1.00144.71 ATOM 86 N ARG A 75 47.996 63.434 5.183 1.00112.27 ATOM 87 CA ARG A 75 47.933 62.518 4.025 1.00105.72 ATOM 88 C ARG A 75 48.275 63.219 2.702 1.00 99.49 ATOM 89 O ARG A 75 47.916 64.375 2.508 1.00 87.25 ATOM 90 CB ARG A 75 46.534 61.887 3.969 1.00 98.46 ATOM 91 CG ARG A 75 46.466 60.476 3.403 1.00 93.48 ATOM 92 CD ARG A 75 45.493 59.597 4.196 1.00 96.10 ATOM 93 NE ARG A 75 44.857 58.565 3.368 1.00100.26 ATOM 94 CZ ARG A 75 43.686 58.687 2.731 1.00106.90 ATOM 95 NH1 ARG A 75 42.955 59.799 2.811 1.00108.76 ATOM 96 NH2 ARG A 75 43.235 57.676 1.999 1.00106.40 ATOM 97 N CYS A 76 48.968 62.516 1.806 1.00 96.72 ATOM 98 CA CYS A 76 49.419 63.100 0.533 1.00100.25 ATOM 99 C CYS A 76 48.914 62.405 -0.754 1.00 96.79 ATOM 100 O CYS A 76 49.175 62.899 -1.858 1.00 83.85 ATOM 101 CB CYS A 76 50.944 63.122 0.487 1.00111.27 ATOM 102 SG CYS A 76 51.757 64.313 1.575 1.00125.15 ATOM 103 N ASP A 77 48.209 61.277 -0.628 1.00 94.02 ATOM 104 CA ASP A 77 47.716 60.549 -1.806 1.00 92.32 ATOM 105 C ASP A 77 46.596 61.346 -2.483 1.00 93.89 ATOM 106 O ASP A 77 46.033 62.249 -1.873 1.00 94.65 ATOM 107 CB ASP A 77 47.261 59.119 -1.439 1.00 87.42 ATOM 108 CG ASP A 77 45.894 59.077 -0.775 1.00 83.71 ATOM 109 OD1 ASP A 77 44.873 59.106 -1.479 1.00 91.14 ATOM 110 OD2 ASP A 77 45.831 58.982 0.456 1.00 80.65 ATOM 111 N ASN A 78 46.289 61.022 -3.738 1.00 93.87 ATOM 112 CA ASN A 78 45.265 61.760 -4.496 1.00 98.89 ATOM 113 C ASN A 78 43.851 61.628 -3.920 1.00 94.83 ATOM 114 O ASN A 78 43.084 62.596 -3.903 1.00 97.81 ATOM 115 CB ASN A 78 45.260 61.353 -5.977 1.00102.51 ATOM 116 CG ASN A 78 44.912 59.897 -6.187 1.00100.48 ATOM 117 OD1 ASN A 78 45.792 59.030 -6.218 1.00101.76 ATOM 118 ND2 ASN A 78 43.626 59.621 -6.343 1.00 98.48 ATOM 119 N LEU A 79 43.516 60.440 -3.433 1.00 85.65 ATOM 120 CA LEU A 79 42.208 60.206 -2.823 1.00 83.92 ATOM 121 C LEU A 79 41.987 60.897 -1.456 1.00 87.78 ATOM 122 O LEU A 79 40.864 60.906 -0.932 1.00 86.17 ATOM 123 CB LEU A 79 41.968 58.711 -2.687 1.00 78.63 ATOM 124 CG LEU A 79 41.171 58.076 -3.807 1.00 77.46 ATOM 125 CD1 LEU A 79 41.137 56.580 -3.524 1.00 78.53 ATOM 126 CD2 LEU A 79 39.764 58.667 -3.906 1.00 75.53 ATOM 127 N CYS A 80 43.048 61.469 -0.888 1.00 89.66 ATOM 128 CA CYS A 80 42.951 62.230 0.356 1.00 82.45 ATOM 129 C CYS A 80 41.886 63.338 0.291 1.00 80.77 ATOM 130 O CYS A 80 41.106 63.490 1.224 1.00 87.28 ATOM 131 CB CYS A 80 44.332 62.779 0.798 1.00 81.77 ATOM 132 SG CYS A 80 44.967 64.313 0.049 1.00 81.61 ATOM 133 N LYS A 81 41.826 64.093 -0.803 1.00 80.53 ATOM 134 CA LYS A 81 40.875 65.217 -0.892 1.00 81.18 ATOM 135 C LYS A 81 39.414 64.803 -0.719 1.00 81.61 ATOM 136 O LYS A 81 38.594 65.619 -0.322 1.00 84.45 ATOM 137 CB LYS A 81 41.043 65.986 -2.202 1.00 82.64 ATOM 138 CG LYS A 81 42.002 67.160 -2.117 1.00 87.21 ATOM 139 CD LYS A 81 41.351 68.375 -1.478 1.00 89.16 ATOM 140 CE LYS A 81 42.276 69.586 -1.467 1.00 87.19 ATOM 141 NZ LYS A 81 41.483 70.846 -1.487 1.00 87.48 ATOM 142 N SER A 82 39.095 63.546 -1.010 1.00 82.40 ATOM 143 CA SER A 82 37.744 63.036 -0.816 1.00 90.87 ATOM 144 C SER A 82 37.448 62.800 0.664 1.00100.14 ATOM 145 O SER A 82 36.372 63.163 1.151 1.00 99.62 ATOM 146 CB SER A 82 37.547 61.744 -1.612 1.00 93.19 ATOM 147 OG SER A 82 37.531 62.019 -3.005 1.00 92.39 ATOM 148 N TYR A 83 38.414 62.204 1.370 1.00109.92 ATOM 149 CA TYR A 83 38.294 61.901 2.810 1.00108.15 ATOM 150 C TYR A 83 38.622 63.087 3.730 1.00106.87 ATOM 151 O TYR A 83 38.663 62.925 4.955 1.00103.08 ATOM 152 CB TYR A 83 39.188 60.710 3.181 1.00105.40 ATOM 153 CG TYR A 83 38.738 59.391 2.586 1.00109.73 ATOM 154 CD1 TYR A 83 37.552 58.783 3.007 1.00109.79 ATOM 155 CD2 TYR A 83 39.501 58.743 1.613 1.00111.31 ATOM 156 CE1 TYR A 83 37.137 57.574 2.469 1.00107.00 ATOM 157 CE2 TYR A 83 39.096 57.532 1.070 1.00105.76 ATOM 158 CZ TYR A 83 37.916 56.952 1.501 1.00104.71 ATOM 159 OH TYR A 83 37.518 55.748 0.968 1.00 88.78 ATOM 160 N THR A 84 38.917 64.223 3.125 1.00105.97 ATOM 161 CA THR A 84 39.159 65.424 3.878 1.00102.00 ATOM 162 C THR A 84 40.240 65.163 4.902 1.00 85.70 ATOM 163 O THR A 84 40.150 65.571 6.034 1.00 85.08 ATOM 164 CB THR A 84 37.881 65.826 4.594 1.00 84.22 ATOM 165 OG1 THR A 84 37.664 64.917 5.675 1.00 84.12 ATOM 166 CG2 THR A 84 36.710 65.742 3.646 1.00 86.67 ATOM 167 N SER A 85 41.265 64.454 4.491 1.00 88.32 ATOM 168 CA SER A 85 42.398 64.155 5.354 1.00 83.88 ATOM 169 C SER A 85 43.715 64.695 4.799 1.00 83.68 ATOM 170 O SER A 85 44.783 64.191 5.151 1.00 77.71 ATOM 171 CB SER A 85 42.507 62.639 5.587 1.00 81.28 ATOM 172 OG SER A 85 43.091 61.975 4.485 1.00 75.54 ATOM 173 N CYS A 86 43.660 65.718 3.949 1.00 90.48 ATOM 174 CA CYS A 86 44.894 66.200 3.337 1.00103.20 ATOM 175 C CYS A 86 45.575 67.160 4.301 1.00102.36 ATOM 176 O CYS A 86 44.922 67.738 5.160 1.00105.08 ATOM 177 CB CYS A 86 44.647 66.850 1.962 1.00106.49 ATOM 178 SG CYS A 86 43.726 65.830 0.760 1.00125.97 ATOM 179 N CYS A 87 46.890 67.292 4.172 1.00100.93 ATOM 180 CA CYS A 87 47.653 68.269 4.932 1.00108.30 ATOM 181 C CYS A 87 47.366 69.658 4.402 1.00105.68 ATOM 182 O CYS A 87 47.158 69.827 3.210 1.00115.36 ATOM 183 CB CYS A 87 49.148 68.010 4.800 1.00120.49 ATOM 184 SG CYS A 87 49.570 66.273 4.591 1.00140.73 ATOM 185 N HIS A 88 47.403 70.649 5.286 1.00108.77 ATOM 186 CA HIS A 88 47.026 72.029 4.957 1.00113.82 ATOM 187 C HIS A 88 47.684 72.578 3.675 1.00109.73 ATOM 188 O HIS A 88 47.106 73.430 3.002 1.00112.30 ATOM 189 CB HIS A 88 47.303 72.967 6.157 1.00119.97 ATOM 190 CG HIS A 88 48.762 73.223 6.414 1.00123.66 ATOM 191 ND1 HIS A 88 49.615 72.264 6.925 1.00124.23 ATOM 192 CD2 HIS A 88 49.515 74.335 6.234 1.00116.12 ATOM 193 CE1 HIS A 88 50.829 72.771 7.039 1.00119.50 ATOM 194 NE2 HIS A 88 50.795 74.027 6.626 1.00119.75 ATOM 195 N ASP A 89 48.870 72.078 3.334 1.00107.67 ATOM 196 CA ASP A 89 49.652 72.606 2.202 1.00112.94 ATOM 197 C ASP A 89 49.461 71.861 0.855 1.00111.70 ATOM 198 O ASP A 89 50.104 72.198 -0.147 1.00108.56 ATOM 199 CB ASP A 89 51.140 72.638 2.581 1.00116.95 ATOM 200 CG ASP A 89 51.662 71.281 3.040 1.00127.08 ATOM 201 OD1 ASP A 89 50.837 70.367 3.290 1.00129.82 ATOM 202 OD2 ASP A 89 52.898 71.135 3.157 1.00131.68 ATOM 203 N PHE A 90 48.578 70.865 0.833 1.00103.87 ATOM 204 CA PHE A 90 48.287 70.096 -0.380 1.00 92.28 ATOM 205 C PHE A 90 47.854 71.012 -1.543 1.00 94.31 ATOM 206 O PHE A 90 48.322 70.869 -2.676 1.00 85.38 ATOM 207 CB PHE A 90 47.217 69.053 -0.062 1.00 86.52 ATOM 208 CG PHE A 90 46.974 68.067 -1.161 1.00 92.02 ATOM 209 CD1 PHE A 90 47.872 67.038 -1.400 1.00 97.07 ATOM 210 CD2 PHE A 90 45.826 68.142 -1.942 1.00 96.98 ATOM 211 CE1 PHE A 90 47.645 66.113 -2.406 1.00 99.72 ATOM 212 CE2 PHE A 90 45.591 67.221 -2.952 1.00 95.46 ATOM 213 CZ PHE A 90 46.500 66.202 -3.182 1.00 99.43 ATOM 214 N ASP A 91 47.004 71.989 -1.254 1.00 93.85 ATOM 215 CA ASP A 91 46.552 72.937 -2.287 1.00 99.72 ATOM 216 C ASP A 91 47.667 73.908 -2.765 1.00104.64 ATOM 217 O ASP A 91 47.581 74.458 -3.871 1.00 99.75 ATOM 218 CB ASP A 91 45.332 73.740 -1.796 1.00102.49 ATOM 219 CG ASP A 91 44.325 72.886 -1.023 1.00 99.25 ATOM 220 OD1 ASP A 91 44.740 71.899 -0.372 1.00 93.82 ATOM 221 OD2 ASP A 91 43.121 73.219 -1.050 1.00 87.76 ATOM 222 N GLU A 92 48.693 74.120 -1.932 1.00107.20 ATOM 223 CA GLU A 92 49.834 74.986 -2.278 1.00103.93 ATOM 224 C GLU A 92 50.892 74.247 -3.111 1.00108.51 ATOM 225 O GLU A 92 51.364 74.764 -4.127 1.00 98.21 ATOM 226 CB GLU A 92 50.489 75.561 -1.012 1.00 99.69 ATOM 227 N LEU A 93 51.258 73.039 -2.680 1.00115.44 ATOM 228 CA LEU A 93 52.322 72.264 -3.335 1.00115.41 ATOM 229 C LEU A 93 51.789 71.450 -4.499 1.00113.89 ATOM 230 O LEU A 93 52.238 71.603 -5.638 1.00107.30 ATOM 231 CB LEU A 93 52.967 71.288 -2.350 1.00116.08 ATOM 232 CG LEU A 93 53.425 71.835 -1.001 1.00117.80 ATOM 233 CD1 LEU A 93 53.863 70.667 -0.126 1.00121.13 ATOM 234 CD2 LEU A 93 54.530 72.879 -1.169 1.00112.36 ATOM 235 N CYS A 94 50.812 70.600 -4.180 1.00111.97 ATOM 236 CA CYS A 94 50.314 69.546 -5.069 1.00 98.10 ATOM 237 C CYS A 94 49.382 70.015 -6.190 1.00 88.33 ATOM 238 O CYS A 94 49.529 69.575 -7.330 1.00 82.07 ATOM 239 CB CYS A 94 49.595 68.494 -4.227 1.00100.92 ATOM 240 SG CYS A 94 50.696 67.708 -3.039 1.00103.37 ATOM 241 N LEU A 95 48.430 70.893 -5.862 1.00 78.93 ATOM 242 CA LEU A 95 47.428 71.353 -6.826 1.00 72.53 ATOM 243 C LEU A 95 47.716 72.725 -7.403 1.00 67.71 ATOM 244 O LEU A 95 46.800 73.515 -7.566 1.00 69.62 ATOM 245 CB LEU A 95 46.038 71.400 -6.178 1.00 70.21 ATOM 246 CG LEU A 95 45.419 70.102 -5.675 1.00 69.66 ATOM 247 CD1 LEU A 95 44.000 70.387 -5.228 1.00 67.38 ATOM 248 CD2 LEU A 95 45.428 69.018 -6.744 1.00 75.26 ATOM 249 N LYS A 96 48.963 73.023 -7.736 1.00 66.91 ATOM 250 CA LYS A 96 49.255 74.331 -8.315 1.00 70.89 ATOM 251 C LYS A 96 48.525 74.444 -9.665 1.00 72.71 ATOM 252 O LYS A 96 48.417 73.457 -10.398 1.00 72.00 ATOM 253 CB LYS A 96 50.769 74.538 -8.448 1.00 69.45 TER