HEADER VIRUS 06-MAY-15 5A1Z TITLE Cryo-EM structure of Dengue virus serotype 2 strain PVP94-07 TITLE 2 complexed with human antibody 2D22 Fab at 37 degrees C COMPND MOL_ID: 3; COMPND 2 MOLECULE: ANTIGEN-BINDING FRAGMENT OF HUMAN ANTIBODY 2D22 - HEAVY COMPND 3 CHAIN; COMPND 4 CHAIN: G, I, K; COMPND 5 180 COPIES OF FAB 2D22 MOLECULE BIND TO VIRUS SURFACE; EXPDTA ELECTRON MICROSCOPY DBREF 5A1Z I 1 128 PDB 5A1Z 5A1Z 1 128 SEQRES 1 I 119 GLN LEU VAL GLU SER GLY ALA GLU VAL LYS LYS PRO GLY SEQRES 2 I 119 SER SER VAL LYS VAL SER CYS LYS ALA SER GLY GLY THR SEQRES 3 I 119 PHE ASN ASN TYR ALA ILE SER TRP VAL ARG GLN ALA PRO SEQRES 4 I 119 GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE PRO ILE SEQRES 5 I 119 PHE GLY GLY ALA ASN TYR ALA GLN LYS PHE GLN GLY ARG SEQRES 6 I 119 VAL THR ILE THR ALA ASP ARG SER THR SER THR VAL TYR SEQRES 7 I 119 MET GLU LEU SER GLY LEU ARG SER GLU ASP THR ALA VAL SEQRES 8 I 119 TYR TYR CYS ALA ARG ARG PRO GLN SER ILE PHE ASP TRP SEQRES 9 I 119 ASN PHE ASP LEU TRP GLY ARG GLY THR LEU VAL THR VAL SEQRES 10 I 119 SER SER ATOM 1 CA GLN I 3 -98.325-167.161-136.478 1.00 0.00 ATOM 2 CA LEU I 4 -95.291-166.478-138.487 1.00 0.00 ATOM 3 CA VAL I 5 -96.131-166.163-142.157 1.00 0.00 ATOM 4 CA GLU I 6 -93.442-166.101-144.807 1.00 0.00 ATOM 5 CA SER I 7 -93.266-164.678-148.232 1.00 0.00 ATOM 6 CA GLY I 8 -93.782-167.086-151.197 1.00 0.00 ATOM 7 CA ALA I 9 -90.769-168.664-153.025 1.00 0.00 ATOM 8 CA GLU I 10 -88.257-166.450-154.685 1.00 0.00 ATOM 9 CA VAL I 11 -86.559-167.063-157.952 1.00 0.00 ATOM 10 CA LYS I 12 -83.248-165.223-158.161 1.00 0.00 ATOM 11 CA LYS I 13 -80.230-165.545-160.369 1.00 0.00 ATOM 12 CA PRO I 14 -76.597-165.785-158.868 1.00 0.00 ATOM 13 CA GLY I 15 -74.830-162.572-157.676 1.00 0.00 ATOM 14 CA SER I 16 -78.186-160.798-156.772 1.00 0.00 ATOM 15 CA SER I 17 -79.370-159.962-153.301 1.00 0.00 ATOM 16 CA VAL I 18 -82.366-161.663-151.695 1.00 0.00 ATOM 17 CA LYS I 19 -84.769-160.257-149.135 1.00 0.00 ATOM 18 CA VAL I 20 -86.862-162.820-147.247 1.00 0.00 ATOM 19 CA SER I 21 -89.785-161.721-145.045 1.00 0.00 ATOM 20 CA CYS I 22 -91.393-163.039-142.009 1.00 0.00 ATOM 21 CA LYS I 23 -94.483-161.096-140.959 1.00 0.00 ATOM 22 CA ALA I 24 -94.967-162.025-137.381 1.00 0.00 ATOM 23 CA SER I 25 -98.547-161.849-135.990 1.00 0.00 ATOM 24 CA GLY I 26 -100.638-163.577-133.322 1.00 0.00 ATOM 25 CA GLY I 27 -99.027-161.664-130.439 1.00 0.00 ATOM 26 CA THR I 28 -97.604-158.113-130.440 1.00 0.00 ATOM 27 CA PHE I 29 -94.283-157.647-132.241 1.00 0.00 ATOM 28 CA ASN I 30 -92.050-156.375-129.213 1.00 0.00 ATOM 29 CA ASN I 31 -92.843-159.657-127.239 1.00 0.00 ATOM 30 CA TYR I 32 -91.574-161.832-130.183 1.00 0.00 ATOM 31 CA ALA I 33 -87.978-162.295-131.101 1.00 0.00 ATOM 32 CA ILE I 34 -86.837-164.139-134.315 1.00 0.00 ATOM 33 CA SER I 35 -84.181-166.376-135.651 1.00 0.00 ATOM 34 CA TRP I 36 -83.413-167.336-139.088 1.00 0.00 ATOM 35 CA VAL I 37 -82.402-170.907-139.723 1.00 0.00 ATOM 36 CA ARG I 38 -81.721-172.372-143.174 1.00 0.00 ATOM 37 CA GLN I 39 -81.523-175.930-144.593 1.00 0.00 ATOM 38 CA ALA I 40 -79.810-176.637-147.851 1.00 0.00 ATOM 39 CA PRO I 41 -80.519-180.356-148.886 1.00 0.00 ATOM 40 CA GLY I 42 -77.433-182.681-148.587 1.00 0.00 ATOM 41 CA GLN I 43 -76.161-180.928-145.398 1.00 0.00 ATOM 42 CA GLY I 44 -77.857-180.432-141.940 1.00 0.00 ATOM 43 CA LEU I 45 -79.453-177.375-140.279 1.00 0.00 ATOM 44 CA GLU I 46 -77.395-174.175-140.393 1.00 0.00 ATOM 45 CA TRP I 47 -78.287-171.488-137.906 1.00 0.00 ATOM 46 CA MET I 48 -78.103-168.062-139.560 1.00 0.00 ATOM 47 CA GLY I 49 -78.779-165.407-137.082 1.00 0.00 ATOM 48 CA GLY I 50 -81.192-164.006-134.383 1.00 0.00 ATOM 49 CA ILE I 51 -82.590-160.526-133.938 1.00 0.00 ATOM 50 CA ILE I 52 -84.392-159.353-130.714 1.00 0.00 ATOM 51 CA PRO I 53 -86.780-156.799-132.456 1.00 0.00 ATOM 52 CA ILE I 54 -87.698-154.654-129.357 1.00 0.00 ATOM 53 CA PHE I 55 -84.074-153.289-129.308 1.00 0.00 ATOM 54 CA GLY I 56 -82.751-154.321-132.757 1.00 0.00 ATOM 55 CA GLY I 57 -79.938-156.435-131.389 1.00 0.00 ATOM 56 CA ALA I 58 -78.844-159.083-133.660 1.00 0.00 ATOM 57 CA ASN I 59 -76.111-161.636-133.768 1.00 0.00 ATOM 58 CA TYR I 60 -75.044-163.642-136.866 1.00 0.00 ATOM 59 CA ALA I 61 -73.078-166.832-137.353 1.00 0.00 ATOM 60 CA GLN I 62 -69.536-166.305-138.514 1.00 0.00 ATOM 61 CA LYS I 63 -70.428-168.637-141.490 1.00 0.00 ATOM 62 CA PHE I 64 -72.794-165.893-142.867 1.00 0.00 ATOM 63 CA GLN I 65 -70.817-162.877-141.747 1.00 0.00 ATOM 64 CA GLY I 66 -69.983-160.040-144.089 1.00 0.00 ATOM 65 CA ARG I 67 -73.085-160.896-146.183 1.00 0.00 ATOM 66 CA VAL I 68 -76.045-161.005-143.924 1.00 0.00 ATOM 67 CA THR I 69 -78.202-158.107-142.507 1.00 0.00 ATOM 68 CA ILE I 70 -81.327-158.660-140.307 1.00 0.00 ATOM 69 CA THR I 71 -83.605-155.611-140.054 1.00 0.00 ATOM 70 CA ALA I 72 -87.053-155.364-138.544 1.00 0.00 ATOM 71 CA ASP I 73 -89.638-152.832-139.012 1.00 0.00 ATOM 72 CA ARG I 74 -92.181-152.535-136.246 1.00 0.00 ATOM 73 CA SER I 75 -94.830-150.899-138.304 1.00 0.00 ATOM 74 CA THR I 76 -96.000-153.787-140.524 1.00 0.00 ATOM 75 CA SER I 77 -94.486-156.132-137.887 1.00 0.00 ATOM 76 CA THR I 78 -92.094-157.742-140.335 1.00 0.00 ATOM 77 CA VAL I 79 -88.541-158.906-139.994 1.00 0.00 ATOM 78 CA TYR I 80 -86.327-158.990-143.038 1.00 0.00 ATOM 79 CA MET I 81 -83.271-161.109-143.928 1.00 0.00 ATOM 80 CA GLU I 82 -81.164-159.459-146.592 1.00 0.00 ATOM 81 CA LEU I 83 -78.329-161.459-147.955 1.00 0.00 ATOM 82 CA SER I 84 -75.922-159.565-150.341 1.00 0.00 ATOM 83 CA GLY I 85 -74.898-161.561-153.393 1.00 0.00 ATOM 84 CA LEU I 86 -75.618-165.111-154.106 1.00 0.00 ATOM 85 CA ARG I 87 -74.114-168.266-155.255 1.00 0.00 ATOM 86 CA SER I 88 -75.593-171.750-156.085 1.00 0.00 ATOM 87 CA GLU I 89 -75.151-173.136-152.477 1.00 0.00 ATOM 88 CA ASP I 90 -77.606-170.580-151.029 1.00 0.00 ATOM 89 CA THR I 91 -80.406-172.590-152.716 1.00 0.00 ATOM 90 CA ALA I 92 -82.336-173.746-149.682 1.00 0.00 ATOM 91 CA VAL I 93 -85.418-173.524-147.523 1.00 0.00 ATOM 92 CA TYR I 94 -84.981-170.526-145.261 1.00 0.00 ATOM 93 CA TYR I 95 -87.114-170.619-141.949 1.00 0.00 ATOM 94 CA CYS I 96 -88.118-168.049-139.392 1.00 0.00 ATOM 95 CA ALA I 97 -88.309-169.271-135.829 1.00 0.00 ATOM 96 CA ARG I 98 -89.490-167.569-132.621 1.00 0.00 ATOM 97 CA ARG I 99 -87.291-167.235-129.587 1.00 0.00 ATOM 98 CA PRO I 100 -89.114-167.134-126.331 1.00 0.00 ATOM 99 CA GLN I 101 -90.378-163.776-124.941 1.00 0.00 ATOM 100 CA SER I 102 -87.240-161.832-125.817 1.00 0.00 ATOM 101 CA ILE I 103 -84.780-163.751-123.578 1.00 0.00 ATOM 102 CA PHE I 104 -81.113-164.407-124.123 1.00 0.00 ATOM 103 CA ASP I 105 -81.519-168.127-124.801 1.00 0.00 ATOM 104 CA TRP I 106 -81.468-169.324-128.407 1.00 0.00 ATOM 105 CA ASN I 107 -84.255-171.762-127.785 1.00 0.00 ATOM 106 CA PHE I 108 -86.858-171.815-130.475 1.00 0.00 ATOM 107 CA ASP I 109 -90.482-172.852-129.798 1.00 0.00 ATOM 108 CA LEU I 110 -92.385-171.574-132.832 1.00 0.00 ATOM 109 CA TRP I 111 -91.491-172.455-136.378 1.00 0.00 ATOM 110 CA GLY I 112 -92.471-170.869-139.713 1.00 0.00 ATOM 111 CA ARG I 113 -93.344-172.660-142.850 1.00 0.00 ATOM 112 CA GLY I 114 -90.333-171.892-145.104 1.00 0.00 ATOM 113 CA THR I 115 -89.319-169.636-148.002 1.00 0.00 ATOM 114 CA LEU I 116 -87.754-171.600-150.756 1.00 0.00 ATOM 115 CA VAL I 117 -85.092-169.393-152.235 1.00 0.00 ATOM 116 CA THR I 118 -84.136-170.759-155.587 1.00 0.00 ATOM 117 CA VAL I 119 -80.786-169.805-157.091 1.00 0.00 ATOM 118 CA SER I 120 -80.877-170.932-160.713 1.00 0.00 ATOM 119 CA SER I 121 -79.306-169.608-163.939 1.00 0.00 TER