HEADER VIRUS 06-MAY-15 5A1Z TITLE Cryo-EM structure of Dengue virus serotype 2 strain PVP94-07 TITLE 2 complexed with human antibody 2D22 Fab at 37 degrees C COMPND MOL_ID: 3; COMPND 2 MOLECULE: ANTIGEN-BINDING FRAGMENT OF HUMAN ANTIBODY 2D22 - HEAVY COMPND 3 CHAIN; COMPND 4 CHAIN: G, I, K; COMPND 5 180 COPIES OF FAB 2D22 MOLECULE BIND TO VIRUS SURFACE; EXPDTA ELECTRON MICROSCOPY DBREF 5A1Z K 1 128 PDB 5A1Z 5A1Z 1 128 SEQRES 1 K 119 GLN LEU VAL GLU SER GLY ALA GLU VAL LYS LYS PRO GLY SEQRES 2 K 119 SER SER VAL LYS VAL SER CYS LYS ALA SER GLY GLY THR SEQRES 3 K 119 PHE ASN ASN TYR ALA ILE SER TRP VAL ARG GLN ALA PRO SEQRES 4 K 119 GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE PRO ILE SEQRES 5 K 119 PHE GLY GLY ALA ASN TYR ALA GLN LYS PHE GLN GLY ARG SEQRES 6 K 119 VAL THR ILE THR ALA ASP ARG SER THR SER THR VAL TYR SEQRES 7 K 119 MET GLU LEU SER GLY LEU ARG SER GLU ASP THR ALA VAL SEQRES 8 K 119 TYR TYR CYS ALA ARG ARG PRO GLN SER ILE PHE ASP TRP SEQRES 9 K 119 ASN PHE ASP LEU TRP GLY ARG GLY THR LEU VAL THR VAL SEQRES 10 K 119 SER SER ATOM 1 CA GLN K 3 -126.736-117.559-163.998 1.00 0.00 ATOM 2 CA LEU K 4 -129.672-118.015-161.691 1.00 0.00 ATOM 3 CA VAL K 5 -130.738-121.634-161.293 1.00 0.00 ATOM 4 CA GLU K 6 -133.917-122.176-159.273 1.00 0.00 ATOM 5 CA SER K 7 -135.714-125.431-158.130 1.00 0.00 ATOM 6 CA GLY K 8 -138.476-127.145-160.212 1.00 0.00 ATOM 7 CA ALA K 9 -142.168-126.566-159.777 1.00 0.00 ATOM 8 CA GLU K 10 -144.014-127.109-156.657 1.00 0.00 ATOM 9 CA VAL K 11 -147.551-128.377-155.950 1.00 0.00 ATOM 10 CA LYS K 12 -148.468-127.173-152.491 1.00 0.00 ATOM 11 CA LYS K 13 -151.475-127.087-150.162 1.00 0.00 ATOM 12 CA PRO K 14 -152.704-123.632-148.731 1.00 0.00 ATOM 13 CA GLY K 15 -151.286-122.242-145.439 1.00 0.00 ATOM 14 CA SER K 16 -147.966-124.029-145.563 1.00 0.00 ATOM 15 CA SER K 17 -144.473-122.922-146.196 1.00 0.00 ATOM 16 CA VAL K 18 -142.737-123.485-149.509 1.00 0.00 ATOM 17 CA LYS K 19 -139.085-122.660-149.847 1.00 0.00 ATOM 18 CA VAL K 20 -137.842-121.762-153.350 1.00 0.00 ATOM 19 CA SER K 21 -134.089-121.649-154.031 1.00 0.00 ATOM 20 CA CYS K 22 -132.131-119.518-156.354 1.00 0.00 ATOM 21 CA LYS K 23 -128.496-120.177-156.732 1.00 0.00 ATOM 22 CA ALA K 24 -126.890-117.047-158.045 1.00 0.00 ATOM 23 CA SER K 25 -123.477-117.660-159.679 1.00 0.00 ATOM 24 CA GLY K 26 -120.989-116.572-162.310 1.00 0.00 ATOM 25 CA GLY K 27 -119.719-113.685-160.360 1.00 0.00 ATOM 26 CA THR K 28 -119.712-113.118-156.638 1.00 0.00 ATOM 27 CA PHE K 29 -122.678-113.582-154.196 1.00 0.00 ATOM 28 CA ASN K 30 -121.844-110.668-151.920 1.00 0.00 ATOM 29 CA ASN K 31 -121.548-108.379-154.979 1.00 0.00 ATOM 30 CA TYR K 32 -124.913-109.555-156.147 1.00 0.00 ATOM 31 CA ALA K 33 -128.101-108.138-154.615 1.00 0.00 ATOM 32 CA ILE K 34 -131.085-110.344-155.576 1.00 0.00 ATOM 33 CA SER K 35 -134.856-109.628-155.225 1.00 0.00 ATOM 34 CA TRP K 36 -137.761-112.130-155.337 1.00 0.00 ATOM 35 CA VAL K 37 -140.304-111.030-157.921 1.00 0.00 ATOM 36 CA ARG K 38 -143.569-112.812-158.754 1.00 0.00 ATOM 37 CA GLN K 39 -146.075-112.697-161.536 1.00 0.00 ATOM 38 CA ALA K 40 -149.459-114.405-161.072 1.00 0.00 ATOM 39 CA PRO K 41 -151.695-115.350-164.059 1.00 0.00 ATOM 40 CA GLY K 42 -154.393-112.775-164.652 1.00 0.00 ATOM 41 CA GLN K 43 -152.394-110.166-162.770 1.00 0.00 ATOM 42 CA GLY K 44 -149.172-108.112-163.081 1.00 0.00 ATOM 43 CA LEU K 45 -145.662-107.974-161.851 1.00 0.00 ATOM 44 CA GLU K 46 -145.349-107.936-158.053 1.00 0.00 ATOM 45 CA TRP K 47 -142.187-107.106-156.091 1.00 0.00 ATOM 46 CA MET K 48 -141.938-109.182-152.881 1.00 0.00 ATOM 47 CA GLY K 49 -138.759-108.103-151.054 1.00 0.00 ATOM 48 CA GLY K 50 -134.975-107.486-151.761 1.00 0.00 ATOM 49 CA ILE K 51 -131.807-108.750-150.060 1.00 0.00 ATOM 50 CA ILE K 52 -128.245-107.474-150.025 1.00 0.00 ATOM 51 CA PRO K 53 -126.192-110.745-149.295 1.00 0.00 ATOM 52 CA ILE K 54 -123.058-108.801-148.130 1.00 0.00 ATOM 53 CA PHE K 55 -125.000-107.565-145.208 1.00 0.00 ATOM 54 CA GLY K 56 -127.537-110.366-145.328 1.00 0.00 ATOM 55 CA GLY K 57 -130.120-107.640-144.763 1.00 0.00 ATOM 56 CA ALA K 58 -133.564-107.685-146.165 1.00 0.00 ATOM 57 CA ASN K 59 -136.644-105.674-146.494 1.00 0.00 ATOM 58 CA TYR K 60 -140.165-106.707-147.876 1.00 0.00 ATOM 59 CA ALA K 61 -143.002-104.852-149.434 1.00 0.00 ATOM 60 CA GLN K 62 -145.945-104.438-146.916 1.00 0.00 ATOM 61 CA LYS K 63 -148.105-107.053-148.718 1.00 0.00 ATOM 62 CA PHE K 64 -145.936-109.884-147.668 1.00 0.00 ATOM 63 CA GLN K 65 -144.870-108.811-144.185 1.00 0.00 ATOM 64 CA GLY K 66 -145.052-111.419-141.518 1.00 0.00 ATOM 65 CA ARG K 67 -145.399-114.173-144.145 1.00 0.00 ATOM 66 CA VAL K 68 -142.143-114.123-146.016 1.00 0.00 ATOM 67 CA THR K 69 -138.712-115.104-144.968 1.00 0.00 ATOM 68 CA ILE K 70 -135.578-114.445-147.188 1.00 0.00 ATOM 69 CA THR K 71 -132.418-116.237-146.152 1.00 0.00 ATOM 70 CA ALA K 72 -128.966-116.802-147.703 1.00 0.00 ATOM 71 CA ASP K 73 -126.085-119.239-147.501 1.00 0.00 ATOM 72 CA ARG K 74 -122.806-117.822-148.609 1.00 0.00 ATOM 73 CA SER K 75 -121.173-121.128-148.786 1.00 0.00 ATOM 74 CA THR K 76 -123.266-122.763-151.442 1.00 0.00 ATOM 75 CA SER K 77 -124.000-119.339-152.847 1.00 0.00 ATOM 76 CA THR K 78 -127.661-119.731-152.720 1.00 0.00 ATOM 77 CA VAL K 79 -130.367-117.329-151.613 1.00 0.00 ATOM 78 CA TYR K 80 -133.790-118.645-150.434 1.00 0.00 ATOM 79 CA MET K 81 -137.376-117.298-150.441 1.00 0.00 ATOM 80 CA GLU K 82 -139.816-119.062-148.003 1.00 0.00 ATOM 81 CA LEU K 83 -143.628-118.097-148.220 1.00 0.00 ATOM 82 CA SER K 84 -146.027-119.283-145.516 1.00 0.00 ATOM 83 CA GLY K 85 -149.640-118.446-145.355 1.00 0.00 ATOM 84 CA LEU K 86 -150.303-119.475-148.965 1.00 0.00 ATOM 85 CA ARG K 87 -153.525-118.704-150.715 1.00 0.00 ATOM 86 CA SER K 88 -154.800-118.940-154.205 1.00 0.00 ATOM 87 CA GLU K 89 -153.129-115.636-155.499 1.00 0.00 ATOM 88 CA ASP K 90 -149.769-117.177-154.513 1.00 0.00 ATOM 89 CA THR K 91 -150.086-119.432-157.552 1.00 0.00 ATOM 90 CA ALA K 92 -147.535-117.589-159.766 1.00 0.00 ATOM 91 CA VAL K 93 -144.172-117.904-161.598 1.00 0.00 ATOM 92 CA TYR K 94 -141.485-116.893-159.083 1.00 0.00 ATOM 93 CA TYR K 95 -138.360-115.159-160.456 1.00 0.00 ATOM 94 CA CYS K 96 -135.287-114.386-158.549 1.00 0.00 ATOM 95 CA ALA K 97 -133.744-111.457-160.426 1.00 0.00 ATOM 96 CA ARG K 98 -130.312-109.991-159.944 1.00 0.00 ATOM 97 CA ARG K 99 -129.366-106.369-160.385 1.00 0.00 ATOM 98 CA PRO K 100 -125.769-105.361-159.653 1.00 0.00 ATOM 99 CA GLN K 101 -122.068-105.986-159.850 1.00 0.00 ATOM 100 CA SER K 102 -121.807-103.225-157.309 1.00 0.00 ATOM 101 CA ILE K 103 -123.556-103.645-153.955 1.00 0.00 ATOM 102 CA PHE K 104 -126.633-101.521-154.750 1.00 0.00 ATOM 103 CA ASP K 105 -129.227-100.799-157.394 1.00 0.00 ATOM 104 CA TRP K 106 -133.049-100.868-157.418 1.00 0.00 ATOM 105 CA ASN K 107 -133.014-102.191-161.036 1.00 0.00 ATOM 106 CA PHE K 108 -133.119-105.671-162.630 1.00 0.00 ATOM 107 CA ASP K 109 -131.153-106.836-165.701 1.00 0.00 ATOM 108 CA LEU K 110 -130.640-110.552-165.193 1.00 0.00 ATOM 109 CA TRP K 111 -133.673-112.904-164.428 1.00 0.00 ATOM 110 CA GLY K 112 -133.698-116.546-163.502 1.00 0.00 ATOM 111 CA ARG K 113 -135.920-118.847-165.664 1.00 0.00 ATOM 112 CA GLY K 114 -138.874-118.969-163.241 1.00 0.00 ATOM 113 CA THR K 115 -140.398-121.400-160.655 1.00 0.00 ATOM 114 CA LEU K 116 -144.129-122.196-160.963 1.00 0.00 ATOM 115 CA VAL K 117 -145.613-122.622-157.519 1.00 0.00 ATOM 116 CA THR K 118 -149.134-124.068-157.705 1.00 0.00 ATOM 117 CA VAL K 119 -151.263-123.358-154.549 1.00 0.00 ATOM 118 CA SER K 120 -154.332-125.584-154.839 1.00 0.00 ATOM 119 CA SER K 121 -156.222-128.019-152.611 1.00 0.00 TER