HEADER RIBOSOME 21-MAY-15 5A2Q TITLE Structure of the HCV IRES bound to the human ribosome COMPND MOL_ID: 36; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN EL41; COMPND 3 CHAIN: h; EXPDTA ELECTRON MICROSCOPY DBREF 5A2Q h 2 25 UNP P62945 RL41_HUMAN 2 25 SEQRES 1 h 24 ARG ALA LYS TRP ARG LYS LYS ARG MET ARG ARG LEU LYS SEQRES 2 h 24 ARG LYS ARG ARG LYS MET ARG GLN ARG SER LYS ATOM 1 N ARG h 2 120.614 154.543 155.359 1.00 21.41 ATOM 2 CA ARG h 2 121.131 154.625 153.977 1.00 21.41 ATOM 3 C ARG h 2 121.724 155.976 153.650 1.00 21.41 ATOM 4 O ARG h 2 121.125 156.995 153.960 1.00 21.41 ATOM 5 CB ARG h 2 120.044 154.338 152.940 1.00 17.25 ATOM 6 CG ARG h 2 120.430 154.749 151.508 1.00 17.25 ATOM 7 CD ARG h 2 119.310 154.491 150.504 1.00 17.25 ATOM 8 NE ARG h 2 119.607 155.080 149.200 1.00 17.25 ATOM 9 CZ ARG h 2 118.721 155.252 148.220 1.00 17.25 ATOM 10 NH1 ARG h 2 117.457 154.890 148.374 1.00 17.25 ATOM 11 NH2 ARG h 2 119.101 155.802 147.079 1.00 17.25 ATOM 12 N ALA h 3 122.866 155.983 152.968 1.00 23.85 ATOM 13 CA ALA h 3 123.713 157.175 152.852 1.00 23.85 ATOM 14 C ALA h 3 123.037 158.450 152.329 1.00 23.85 ATOM 15 O ALA h 3 123.120 159.501 152.980 1.00 23.85 ATOM 16 CB ALA h 3 124.908 156.850 151.983 1.00 22.92 ATOM 17 N LYS h 4 122.406 158.367 151.159 1.00 22.40 ATOM 18 CA LYS h 4 121.729 159.517 150.571 1.00 22.40 ATOM 19 C LYS h 4 120.822 160.158 151.620 1.00 22.40 ATOM 20 O LYS h 4 120.894 161.368 151.875 1.00 22.40 ATOM 21 CB LYS h 4 120.929 159.098 149.329 1.00 17.19 ATOM 22 CG LYS h 4 120.191 160.225 148.624 1.00 17.19 ATOM 23 CD LYS h 4 119.079 159.692 147.729 1.00 17.19 ATOM 24 CE LYS h 4 119.451 159.713 146.265 1.00 17.19 ATOM 25 NZ LYS h 4 118.492 158.951 145.416 1.00 17.19 ATOM 26 N TRP h 5 120.015 159.341 152.283 1.00 24.54 ATOM 27 CA TRP h 5 119.075 159.883 153.252 1.00 24.54 ATOM 28 C TRP h 5 119.730 160.503 154.454 1.00 24.54 ATOM 29 O TRP h 5 119.232 161.488 154.972 1.00 24.54 ATOM 30 CB TRP h 5 118.100 158.816 153.728 1.00 23.47 ATOM 31 CG TRP h 5 117.462 158.122 152.604 1.00 23.47 ATOM 32 CD1 TRP h 5 117.390 156.773 152.405 1.00 23.47 ATOM 33 CD2 TRP h 5 116.833 158.729 151.478 1.00 23.47 ATOM 34 NE1 TRP h 5 116.737 156.501 151.228 1.00 23.47 ATOM 35 CE2 TRP h 5 116.385 157.687 150.638 1.00 23.47 ATOM 36 CE3 TRP h 5 116.591 160.054 151.101 1.00 23.47 ATOM 37 CZ2 TRP h 5 115.717 157.927 149.451 1.00 23.47 ATOM 38 CZ3 TRP h 5 115.942 160.292 149.926 1.00 23.47 ATOM 39 CH2 TRP h 5 115.505 159.235 149.110 1.00 23.47 ATOM 40 N ARG h 6 120.831 159.951 154.929 1.00 28.64 ATOM 41 CA ARG h 6 121.374 160.531 156.133 1.00 28.64 ATOM 42 C ARG h 6 122.136 161.807 155.796 1.00 28.64 ATOM 43 O ARG h 6 122.268 162.694 156.641 1.00 28.64 ATOM 44 CB ARG h 6 122.234 159.539 156.885 1.00 36.97 ATOM 45 CG ARG h 6 123.622 159.420 156.405 1.00 36.97 ATOM 46 CD ARG h 6 124.442 158.886 157.553 1.00 36.97 ATOM 47 NE ARG h 6 125.706 158.287 157.115 1.00 36.97 ATOM 48 CZ ARG h 6 126.705 157.944 157.936 1.00 36.97 ATOM 49 NH1 ARG h 6 126.593 158.142 159.256 1.00 36.97 ATOM 50 NH2 ARG h 6 127.825 157.409 157.439 1.00 36.97 ATOM 51 N LYS h 7 122.595 161.922 154.555 1.00 28.77 ATOM 52 CA LYS h 7 123.090 163.203 154.050 1.00 28.77 ATOM 53 C LYS h 7 121.937 164.207 154.081 1.00 28.77 ATOM 54 O LYS h 7 122.108 165.391 154.412 1.00 28.77 ATOM 55 CB LYS h 7 123.653 163.039 152.633 1.00 27.37 ATOM 56 CG LYS h 7 124.530 164.168 152.091 1.00 27.37 ATOM 57 CD LYS h 7 124.664 164.032 150.554 1.00 27.37 ATOM 58 CE LYS h 7 125.951 164.641 149.965 1.00 27.37 ATOM 59 NZ LYS h 7 125.896 164.775 148.465 1.00 27.37 ATOM 60 N LYS h 8 120.747 163.721 153.766 1.00 30.40 ATOM 61 CA LYS h 8 119.588 164.585 153.842 1.00 30.40 ATOM 62 C LYS h 8 119.282 165.034 155.267 1.00 30.40 ATOM 63 O LYS h 8 119.117 166.229 155.526 1.00 30.40 ATOM 64 CB LYS h 8 118.381 163.890 153.266 1.00 29.14 ATOM 65 CG LYS h 8 117.164 164.731 153.271 1.00 29.14 ATOM 66 CD LYS h 8 116.496 164.582 151.950 1.00 29.14 ATOM 67 CE LYS h 8 115.137 165.213 151.973 1.00 29.14 ATOM 68 NZ LYS h 8 114.571 165.137 150.604 1.00 29.14 ATOM 69 N ARG h 9 119.198 164.088 156.190 1.00 32.47 ATOM 70 CA ARG h 9 118.911 164.409 157.579 1.00 32.47 ATOM 71 C ARG h 9 119.948 165.382 158.117 1.00 32.47 ATOM 72 O ARG h 9 119.645 166.270 158.919 1.00 32.47 ATOM 73 CB ARG h 9 118.875 163.135 158.405 1.00 34.75 ATOM 74 CG ARG h 9 119.026 163.323 159.888 1.00 34.75 ATOM 75 CD ARG h 9 119.615 162.062 160.529 1.00 34.75 ATOM 76 NE ARG h 9 118.657 161.344 161.371 1.00 34.75 ATOM 77 CZ ARG h 9 118.020 160.226 161.022 1.00 34.75 ATOM 78 NH1 ARG h 9 118.232 159.662 159.836 1.00 34.75 ATOM 79 NH2 ARG h 9 117.170 159.658 161.870 1.00 34.75 ATOM 80 N MET h 10 121.169 165.244 157.628 1.00 35.81 ATOM 81 CA MET h 10 122.220 166.178 157.991 1.00 35.81 ATOM 82 C MET h 10 121.989 167.583 157.477 1.00 35.81 ATOM 83 O MET h 10 122.309 168.552 158.152 1.00 35.81 ATOM 84 CB MET h 10 123.563 165.709 157.466 1.00 47.04 ATOM 85 CG MET h 10 124.726 166.417 158.129 1.00 47.04 ATOM 86 SD MET h 10 124.776 165.971 159.882 1.00 47.04 ATOM 87 CE MET h 10 125.095 164.191 159.752 1.00 47.04 ATOM 88 N ARG h 11 121.468 167.715 156.269 1.00 38.17 ATOM 89 CA ARG h 11 121.213 169.067 155.795 1.00 38.17 ATOM 90 C ARG h 11 119.989 169.707 156.431 1.00 38.17 ATOM 91 O ARG h 11 119.947 170.934 156.606 1.00 38.17 ATOM 92 CB ARG h 11 121.080 169.083 154.290 1.00 35.03 ATOM 93 CG ARG h 11 122.414 168.955 153.652 1.00 35.03 ATOM 94 CD ARG h 11 122.284 168.685 152.199 1.00 35.03 ATOM 95 NE ARG h 11 123.550 168.187 151.683 1.00 35.03 ATOM 96 CZ ARG h 11 123.791 167.983 150.395 1.00 35.03 ATOM 97 NH1 ARG h 11 122.848 168.248 149.497 1.00 35.03 ATOM 98 NH2 ARG h 11 124.974 167.530 150.003 1.00 35.03 ATOM 99 N ARG h 12 118.996 168.898 156.779 1.00 41.61 ATOM 100 CA ARG h 12 117.898 169.413 157.581 1.00 41.61 ATOM 101 C ARG h 12 118.450 169.968 158.888 1.00 41.61 ATOM 102 O ARG h 12 118.200 171.128 159.250 1.00 41.61 ATOM 103 CB ARG h 12 116.869 168.333 157.871 1.00 45.43 ATOM 104 CG ARG h 12 115.946 168.028 156.721 1.00 45.43 ATOM 105 CD ARG h 12 115.077 166.798 157.052 1.00 45.43 ATOM 106 NE ARG h 12 114.439 166.223 155.857 1.00 45.43 ATOM 107 CZ ARG h 12 113.144 166.340 155.542 1.00 45.43 ATOM 108 NH1 ARG h 12 112.307 167.004 156.343 1.00 45.43 ATOM 109 NH2 ARG h 12 112.681 165.781 154.423 1.00 45.43 ATOM 110 N LEU h 13 119.223 169.141 159.584 1.00 42.40 ATOM 111 CA LEU h 13 119.809 169.548 160.850 1.00 42.40 ATOM 112 C LEU h 13 120.655 170.817 160.751 1.00 42.40 ATOM 113 O LEU h 13 120.479 171.753 161.525 1.00 42.40 ATOM 114 CB LEU h 13 120.661 168.428 161.405 1.00 48.88 ATOM 115 CG LEU h 13 121.394 168.925 162.642 1.00 48.88 ATOM 116 CD1 LEU h 13 120.383 169.242 163.751 1.00 48.88 ATOM 117 CD2 LEU h 13 122.441 167.915 163.100 1.00 48.88 ATOM 118 N LYS h 14 121.577 170.839 159.800 1.00 44.47 ATOM 119 CA LYS h 14 122.407 172.015 159.573 1.00 44.47 ATOM 120 C LYS h 14 121.569 173.264 159.365 1.00 44.47 ATOM 121 O LYS h 14 121.787 174.273 160.028 1.00 44.47 ATOM 122 CB LYS h 14 123.319 171.818 158.363 1.00 43.04 ATOM 123 CG LYS h 14 124.804 171.718 158.695 1.00 43.04 ATOM 124 CD LYS h 14 125.669 172.063 157.475 1.00 43.04 ATOM 125 CE LYS h 14 125.345 171.167 156.260 1.00 43.04 ATOM 126 NZ LYS h 14 125.158 171.912 154.953 1.00 43.04 ATOM 127 N ARG h 15 120.619 173.200 158.439 1.00 49.40 ATOM 128 CA ARG h 15 119.754 174.345 158.186 1.00 49.40 ATOM 129 C ARG h 15 119.097 174.839 159.485 1.00 49.40 ATOM 130 O ARG h 15 119.112 176.046 159.789 1.00 49.40 ATOM 131 CB ARG h 15 118.694 173.987 157.150 1.00 51.09 ATOM 132 CG ARG h 15 117.896 175.158 156.615 1.00 51.09 ATOM 133 CD ARG h 15 116.752 174.636 155.753 1.00 51.09 ATOM 134 NE ARG h 15 117.119 173.372 155.104 1.00 51.09 ATOM 135 CZ ARG h 15 116.566 172.896 153.984 1.00 51.09 ATOM 136 NH1 ARG h 15 115.607 173.586 153.364 1.00 51.09 ATOM 137 NH2 ARG h 15 116.978 171.731 153.472 1.00 51.09 ATOM 138 N LYS h 16 118.553 173.910 160.269 1.00 54.68 ATOM 139 CA LYS h 16 117.930 174.278 161.543 1.00 54.68 ATOM 140 C LYS h 16 118.909 174.958 162.512 1.00 54.68 ATOM 141 O LYS h 16 118.545 175.923 163.188 1.00 54.68 ATOM 142 CB LYS h 16 117.320 173.050 162.211 1.00 61.77 ATOM 143 CG LYS h 16 116.907 173.260 163.662 1.00 61.77 ATOM 144 CD LYS h 16 116.681 171.917 164.350 1.00 61.77 ATOM 145 CE LYS h 16 116.435 172.053 165.851 1.00 61.77 ATOM 146 NZ LYS h 16 116.278 170.702 166.493 1.00 61.77 ATOM 147 N ARG h 17 120.144 174.464 162.583 1.00 55.18 ATOM 148 CA ARG h 17 121.172 175.112 163.401 1.00 55.18 ATOM 149 C ARG h 17 121.400 176.549 162.945 1.00 55.18 ATOM 150 O ARG h 17 121.471 177.480 163.756 1.00 55.18 ATOM 151 CB ARG h 17 122.483 174.345 163.325 1.00 45.67 ATOM 152 CG ARG h 17 122.880 173.624 164.579 1.00 45.67 ATOM 153 CD ARG h 17 124.231 172.961 164.357 1.00 45.67 ATOM 154 NE ARG h 17 124.333 171.651 164.999 1.00 45.67 ATOM 155 CZ ARG h 17 124.548 170.500 164.361 1.00 45.67 ATOM 156 NH1 ARG h 17 124.693 170.478 163.041 1.00 45.67 ATOM 157 NH2 ARG h 17 124.630 169.366 165.050 1.00 45.67 ATOM 158 N ARG h 18 121.506 176.712 161.630 1.00 58.03 ATOM 159 CA ARG h 18 121.708 178.012 161.013 1.00 58.03 ATOM 160 C ARG h 18 120.580 178.966 161.331 1.00 58.03 ATOM 161 O ARG h 18 120.769 180.176 161.286 1.00 58.03 ATOM 162 CB ARG h 18 121.830 177.866 159.508 1.00 51.92 ATOM 163 CG ARG h 18 122.760 178.844 158.832 1.00 51.92 ATOM 164 CD ARG h 18 122.724 178.602 157.320 1.00 51.92 ATOM 165 NE ARG h 18 122.881 177.181 156.987 1.00 51.92 ATOM 166 CZ ARG h 18 122.396 176.592 155.892 1.00 51.92 ATOM 167 NH1 ARG h 18 121.703 177.295 154.999 1.00 51.92 ATOM 168 NH2 ARG h 18 122.600 175.289 155.696 1.00 51.92 ATOM 169 N LYS h 19 119.389 178.442 161.603 1.00 68.10 ATOM 170 CA LYS h 19 118.345 179.303 162.177 1.00 68.10 ATOM 171 C LYS h 19 118.612 179.635 163.648 1.00 68.10 ATOM 172 O LYS h 19 118.702 180.802 164.034 1.00 68.10 ATOM 173 CB LYS h 19 116.958 178.653 162.064 1.00 76.40 ATOM 174 CG LYS h 19 116.356 178.638 160.666 1.00 76.40 ATOM 175 CD LYS h 19 116.223 180.047 160.092 1.00 76.40 ATOM 176 CE LYS h 19 115.917 179.999 158.588 1.00 76.40 ATOM 177 NZ LYS h 19 116.176 181.300 157.887 1.00 76.40 ATOM 178 N MET h 20 118.762 178.584 164.451 1.00 71.72 ATOM 179 CA MET h 20 118.732 178.693 165.910 1.00 71.72 ATOM 180 C MET h 20 119.859 179.542 166.447 1.00 71.72 ATOM 181 O MET h 20 119.803 180.043 167.563 1.00 71.72 ATOM 182 CB MET h 20 118.794 177.310 166.530 1.00 89.39 ATOM 183 CG MET h 20 118.201 177.208 167.920 1.00 89.39 ATOM 184 SD MET h 20 118.392 175.505 168.526 1.00 89.39 ATOM 185 CE MET h 20 120.190 175.329 168.526 1.00 89.39 ATOM 186 N ARG h 21 120.901 179.665 165.647 1.00 71.41 ATOM 187 CA ARG h 21 121.853 180.728 165.831 1.00 71.41 ATOM 188 C ARG h 21 121.758 181.569 164.598 1.00 71.41 ATOM 189 O ARG h 21 121.992 181.097 163.500 1.00 71.41 ATOM 190 CB ARG h 21 123.264 180.196 166.022 1.00 65.16 ATOM 191 CG ARG h 21 124.348 181.025 165.349 1.00 65.16 ATOM 192 CD ARG h 21 125.716 180.399 165.575 1.00 65.16 ATOM 193 NE ARG h 21 126.585 180.545 164.413 1.00 65.16 ATOM 194 CZ ARG h 21 127.911 180.448 164.456 1.00 65.16 ATOM 195 NH1 ARG h 21 128.528 180.219 165.612 1.00 65.16 ATOM 196 NH2 ARG h 21 128.621 180.590 163.342 1.00 65.16 ATOM 197 N GLN h 22 121.393 182.818 164.765 1.00 92.74 ATOM 198 CA GLN h 22 121.387 183.711 163.631 1.00 92.74 ATOM 199 C GLN h 22 122.452 184.742 163.950 1.00 92.74 ATOM 200 O GLN h 22 122.881 184.838 165.102 1.00 92.74 ATOM 201 CB GLN h 22 120.005 184.338 163.394 1.00 96.63 ATOM 202 CG GLN h 22 119.865 185.094 162.050 1.00 96.63 ATOM 203 CD GLN h 22 120.407 184.298 160.859 1.00 96.63 ATOM 204 OE1 GLN h 22 119.955 183.183 160.583 1.00 96.63 ATOM 205 NE2 GLN h 22 121.370 184.878 160.142 1.00 96.63 ATOM 206 N ARG h 23 122.931 185.457 162.931 1.00109.40 ATOM 207 CA ARG h 23 123.986 186.461 163.106 1.00109.40 ATOM 208 C ARG h 23 123.553 187.619 164.025 1.00109.40 ATOM 209 O ARG h 23 124.380 188.438 164.437 1.00109.40 ATOM 210 CB ARG h 23 124.438 187.000 161.741 1.00108.44 ATOM 211 CG ARG h 23 125.958 187.060 161.571 1.00108.44 ATOM 212 CD ARG h 23 126.590 185.711 161.896 1.00108.44 ATOM 213 NE ARG h 23 128.054 185.746 161.883 1.00108.44 ATOM 214 CZ ARG h 23 128.826 184.676 162.071 1.00108.44 ATOM 215 NH1 ARG h 23 128.268 183.489 162.283 1.00108.44 ATOM 216 NH2 ARG h 23 130.154 184.786 162.044 1.00108.44 ATOM 217 N SER h 24 122.259 187.680 164.340 1.00112.05 ATOM 218 CA SER h 24 121.742 188.584 165.367 1.00112.05 ATOM 219 C SER h 24 122.065 188.060 166.783 1.00112.05 ATOM 220 O SER h 24 121.902 188.783 167.772 1.00112.05 ATOM 221 CB SER h 24 120.224 188.776 165.203 1.00114.65 ATOM 222 OG SER h 24 119.898 189.293 163.920 1.00114.65 ATOM 223 N LYS h 25 122.516 186.803 166.865 1.00103.27 ATOM 224 CA LYS h 25 122.916 186.175 168.130 1.00103.27 ATOM 225 C LYS h 25 124.435 186.113 168.245 1.00103.27 ATOM 226 O LYS h 25 124.978 185.885 169.324 1.00103.27 ATOM 227 CB LYS h 25 122.329 184.763 168.251 1.00 98.69 ATOM 228 CG LYS h 25 120.836 184.691 167.975 1.00 98.69 ATOM 229 CD LYS h 25 120.299 183.267 168.102 1.00 98.69 ATOM 230 CE LYS h 25 118.772 183.238 167.938 1.00 98.69 ATOM 231 NZ LYS h 25 118.160 181.927 168.337 1.00 98.69 TER