HEADER HYDROLASE 17-JUN-15 5A5B TITLE Structure of the 26S proteasome-Ubp6 complex COMPND MOL_ID: 24; COMPND 2 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN9; COMPND 3 CHAIN: O; EXPDTA ELECTRON MICROSCOPY DBREF 5A5B O 1 393 UNP Q04062 RPN9_YEAST 1 393 SEQRES 1 O 31 ILE ILE SER GLY ASP GLN ILE THR LYS MET LYS ASP ARG SEQRES 2 O 31 LEU VAL GLU TRP ASN ASP GLN VAL GLU LYS LEU GLY LYS SEQRES 3 O 31 LYS MET GLU ALA ARG ATOM 1 N ILE O 357 116.748 336.821 344.933 1.00 0.00 ATOM 2 CA ILE O 357 116.017 336.269 346.070 1.00 0.00 ATOM 3 C ILE O 357 114.504 336.097 345.905 1.00 0.00 ATOM 4 O ILE O 357 113.851 336.840 345.170 1.00 0.00 ATOM 5 CB ILE O 357 116.226 337.115 347.339 1.00 0.00 ATOM 6 CG1 ILE O 357 115.699 338.535 347.127 1.00 0.00 ATOM 7 CG2 ILE O 357 117.692 337.109 347.748 1.00 0.00 ATOM 8 CD1 ILE O 357 115.616 339.352 348.397 1.00 0.00 ATOM 9 N ILE O 358 113.944 335.091 346.631 1.00 0.00 ATOM 10 CA ILE O 358 112.541 334.677 346.733 1.00 0.00 ATOM 11 C ILE O 358 111.674 334.587 345.468 1.00 0.00 ATOM 12 O ILE O 358 112.015 334.990 344.360 1.00 0.00 ATOM 13 CB ILE O 358 111.750 335.592 347.687 1.00 0.00 ATOM 14 CG1 ILE O 358 112.311 335.493 349.107 1.00 0.00 ATOM 15 CG2 ILE O 358 110.268 335.257 347.639 1.00 0.00 ATOM 16 CD1 ILE O 358 111.758 336.535 350.055 1.00 0.00 ATOM 17 N SER O 359 110.446 334.048 345.589 1.00 0.00 ATOM 18 CA SER O 359 109.520 333.990 344.457 1.00 0.00 ATOM 19 C SER O 359 108.591 335.175 344.438 1.00 0.00 ATOM 20 O SER O 359 107.811 335.338 343.508 1.00 0.00 ATOM 21 CB SER O 359 108.706 332.694 344.497 1.00 0.00 ATOM 22 OG SER O 359 107.847 332.667 345.624 1.00 0.00 ATOM 23 N GLY O 360 108.697 336.067 345.446 1.00 0.00 ATOM 24 CA GLY O 360 107.864 337.253 345.608 1.00 0.00 ATOM 25 C GLY O 360 108.210 338.319 344.614 1.00 0.00 ATOM 26 O GLY O 360 107.786 338.272 343.467 1.00 0.00 ATOM 27 N ASP O 361 109.028 339.322 344.977 1.00 0.00 ATOM 28 CA ASP O 361 109.328 340.409 344.060 1.00 0.00 ATOM 29 C ASP O 361 110.213 340.034 342.881 1.00 0.00 ATOM 30 O ASP O 361 110.340 340.781 341.909 1.00 0.00 ATOM 31 CB ASP O 361 110.000 341.567 344.802 1.00 0.00 ATOM 32 CG ASP O 361 109.048 342.293 345.732 1.00 0.00 ATOM 33 OD1 ASP O 361 107.820 342.116 345.582 1.00 0.00 ATOM 34 OD2 ASP O 361 109.530 343.039 346.610 1.00 0.00 ATOM 35 N GLN O 362 110.754 338.801 342.845 1.00 0.00 ATOM 36 CA GLN O 362 111.165 338.217 341.588 1.00 0.00 ATOM 37 C GLN O 362 110.030 338.232 340.552 1.00 0.00 ATOM 38 O GLN O 362 110.216 338.696 339.427 1.00 0.00 ATOM 39 CB GLN O 362 111.651 336.782 341.797 1.00 0.00 ATOM 40 CG GLN O 362 112.131 336.098 340.528 1.00 0.00 ATOM 41 CD GLN O 362 112.613 334.682 340.776 1.00 0.00 ATOM 42 OE1 GLN O 362 112.639 334.215 341.915 1.00 0.00 ATOM 43 NE2 GLN O 362 112.999 333.993 339.708 1.00 0.00 ATOM 44 N ILE O 363 108.808 337.806 340.923 1.00 0.00 ATOM 45 CA ILE O 363 107.664 337.730 340.031 1.00 0.00 ATOM 46 C ILE O 363 107.131 339.070 339.537 1.00 0.00 ATOM 47 O ILE O 363 106.786 339.184 338.358 1.00 0.00 ATOM 48 CB ILE O 363 106.490 336.978 340.683 1.00 0.00 ATOM 49 CG1 ILE O 363 106.844 335.502 340.880 1.00 0.00 ATOM 50 CG2 ILE O 363 105.223 337.151 339.859 1.00 0.00 ATOM 51 CD1 ILE O 363 105.861 334.749 341.749 1.00 0.00 ATOM 52 N THR O 364 107.090 340.122 340.396 1.00 0.00 ATOM 53 CA THR O 364 106.669 341.473 340.067 1.00 0.00 ATOM 54 C THR O 364 107.556 342.068 338.996 1.00 0.00 ATOM 55 O THR O 364 107.079 342.692 338.014 1.00 0.00 ATOM 56 CB THR O 364 106.680 342.385 341.309 1.00 0.00 ATOM 57 OG1 THR O 364 105.748 341.889 342.277 1.00 0.00 ATOM 58 CG2 THR O 364 106.279 343.802 340.931 1.00 0.00 ATOM 59 N LYS O 365 108.861 341.914 339.273 1.00 0.00 ATOM 60 CA LYS O 365 109.968 342.372 338.488 1.00 0.00 ATOM 61 C LYS O 365 109.969 341.659 337.148 1.00 0.00 ATOM 62 O LYS O 365 110.330 342.182 336.094 1.00 0.00 ATOM 63 CB LYS O 365 111.285 342.139 339.232 1.00 0.00 ATOM 64 CG LYS O 365 111.486 343.045 340.435 1.00 0.00 ATOM 65 CD LYS O 365 112.766 342.698 341.179 1.00 0.00 ATOM 66 CE LYS O 365 113.995 343.060 340.361 1.00 0.00 ATOM 67 NZ LYS O 365 114.159 344.534 340.228 1.00 0.00 ATOM 68 N MET O 366 109.628 340.347 337.155 1.00 0.00 ATOM 69 CA MET O 366 109.620 339.564 335.923 1.00 0.00 ATOM 70 C MET O 366 108.536 340.041 334.976 1.00 0.00 ATOM 71 O MET O 366 108.811 340.139 333.769 1.00 0.00 ATOM 72 CB MET O 366 109.428 338.079 336.233 1.00 0.00 ATOM 73 CG MET O 366 110.609 337.434 336.938 1.00 0.00 ATOM 74 SD MET O 366 110.300 335.714 337.385 1.00 0.00 ATOM 75 CE MET O 366 110.333 334.935 335.774 1.00 0.00 ATOM 76 N LYS O 367 107.317 340.305 335.484 1.00 0.00 ATOM 77 CA LYS O 367 106.268 340.860 334.645 1.00 0.00 ATOM 78 C LYS O 367 106.682 342.159 333.887 1.00 0.00 ATOM 79 O LYS O 367 106.565 342.157 332.703 1.00 0.00 ATOM 80 CB LYS O 367 105.020 341.161 335.476 1.00 0.00 ATOM 81 CG LYS O 367 103.858 341.723 334.673 1.00 0.00 ATOM 82 CD LYS O 367 102.641 341.959 335.552 1.00 0.00 ATOM 83 CE LYS O 367 101.493 342.559 334.757 1.00 0.00 ATOM 84 NZ LYS O 367 100.293 342.796 335.605 1.00 0.00 ATOM 85 N ASP O 368 107.268 343.127 334.582 1.00 0.00 ATOM 86 CA ASP O 368 107.695 344.366 333.997 1.00 0.00 ATOM 87 C ASP O 368 108.714 344.170 332.874 1.00 0.00 ATOM 88 O ASP O 368 108.769 344.815 331.899 1.00 0.00 ATOM 89 CB ASP O 368 108.295 345.284 335.064 1.00 0.00 ATOM 90 CG ASP O 368 107.247 345.845 336.006 1.00 0.00 ATOM 91 OD1 ASP O 368 106.045 345.748 335.682 1.00 0.00 ATOM 92 OD2 ASP O 368 107.629 346.382 337.067 1.00 0.00 ATOM 93 N ARG O 369 109.676 343.293 333.202 1.00 0.00 ATOM 94 CA ARG O 369 110.741 342.941 332.315 1.00 0.00 ATOM 95 C ARG O 369 110.194 342.193 331.118 1.00 0.00 ATOM 96 O ARG O 369 110.598 342.443 329.992 1.00 0.00 ATOM 97 CB ARG O 369 111.790 342.100 333.044 1.00 0.00 ATOM 98 CG ARG O 369 112.601 342.872 334.072 1.00 0.00 ATOM 99 CD ARG O 369 113.806 342.073 334.539 1.00 0.00 ATOM 100 NE ARG O 369 113.415 340.846 335.229 1.00 0.00 ATOM 101 CZ ARG O 369 113.161 340.770 336.532 1.00 0.00 ATOM 102 NH1 ARG O 369 113.255 341.855 337.289 1.00 0.00 ATOM 103 NH2 ARG O 369 112.812 339.612 337.073 1.00 0.00 ATOM 104 N LEU O 370 109.218 341.278 331.298 1.00 0.00 ATOM 105 CA LEU O 370 108.586 340.523 330.198 1.00 0.00 ATOM 106 C LEU O 370 107.909 341.373 329.182 1.00 0.00 ATOM 107 O LEU O 370 108.143 341.115 327.992 1.00 0.00 ATOM 108 CB LEU O 370 107.565 339.527 330.749 1.00 0.00 ATOM 109 CG LEU O 370 108.130 338.334 331.525 1.00 0.00 ATOM 110 CD1 LEU O 370 107.013 337.543 332.185 1.00 0.00 ATOM 111 CD2 LEU O 370 108.946 337.435 330.607 1.00 0.00 ATOM 112 N VAL O 371 107.031 342.337 329.551 1.00 0.00 ATOM 113 CA VAL O 371 106.303 343.224 328.713 1.00 0.00 ATOM 114 C VAL O 371 107.326 343.955 327.888 1.00 0.00 ATOM 115 O VAL O 371 107.162 344.132 326.718 1.00 0.00 ATOM 116 CB VAL O 371 105.418 344.179 329.535 1.00 0.00 ATOM 117 CG1 VAL O 371 104.815 345.251 328.640 1.00 0.00 ATOM 118 CG2 VAL O 371 104.325 343.405 330.256 1.00 0.00 ATOM 119 N GLU O 372 108.439 344.439 328.502 1.00 0.00 ATOM 120 CA GLU O 372 109.506 345.124 327.778 1.00 0.00 ATOM 121 C GLU O 372 110.278 344.243 326.789 1.00 0.00 ATOM 122 O GLU O 372 110.529 344.652 325.657 1.00 0.00 ATOM 123 CB GLU O 372 110.511 345.735 328.757 1.00 0.00 ATOM 124 CG GLU O 372 109.967 346.911 329.552 1.00 0.00 ATOM 125 CD GLU O 372 110.963 347.438 330.566 1.00 0.00 ATOM 126 OE1 GLU O 372 112.001 346.777 330.778 1.00 0.00 ATOM 127 OE2 GLU O 372 110.704 348.513 331.149 1.00 0.00 ATOM 128 N TRP O 373 110.694 343.006 327.159 1.00 0.00 ATOM 129 CA TRP O 373 111.475 342.144 326.273 1.00 0.00 ATOM 130 C TRP O 373 110.672 341.799 325.007 1.00 0.00 ATOM 131 O TRP O 373 111.186 341.802 323.887 1.00 0.00 ATOM 132 CB TRP O 373 111.895 340.866 327.002 1.00 0.00 ATOM 133 CG TRP O 373 112.719 339.940 326.161 1.00 0.00 ATOM 134 CD1 TRP O 373 112.388 338.674 325.772 1.00 0.00 ATOM 135 CD2 TRP O 373 114.013 340.207 325.607 1.00 0.00 ATOM 136 NE1 TRP O 373 113.396 338.134 325.009 1.00 0.00 ATOM 137 CE2 TRP O 373 114.405 339.059 324.894 1.00 0.00 ATOM 138 CE3 TRP O 373 114.878 341.304 325.644 1.00 0.00 ATOM 139 CZ2 TRP O 373 115.624 338.977 324.222 1.00 0.00 ATOM 140 CZ3 TRP O 373 116.086 341.217 324.976 1.00 0.00 ATOM 141 CH2 TRP O 373 116.450 340.064 324.275 1.00 0.00 ATOM 142 N ASN O 374 109.358 341.515 325.170 1.00 0.00 ATOM 143 CA ASN O 374 108.437 341.186 324.218 1.00 0.00 ATOM 144 C ASN O 374 108.091 342.240 323.204 1.00 0.00 ATOM 145 O ASN O 374 108.202 342.123 322.025 1.00 0.00 ATOM 146 CB ASN O 374 107.128 340.739 324.871 1.00 0.00 ATOM 147 CG ASN O 374 106.116 340.232 323.863 1.00 0.00 ATOM 148 OD1 ASN O 374 106.356 339.237 323.176 1.00 0.00 ATOM 149 ND2 ASN O 374 104.981 340.914 323.769 1.00 0.00 ATOM 150 N ASP O 375 107.816 343.450 323.755 1.00 0.00 ATOM 151 CA ASP O 375 107.591 344.683 322.998 1.00 0.00 ATOM 152 C ASP O 375 108.736 345.008 322.034 1.00 0.00 ATOM 153 O ASP O 375 108.486 345.431 320.938 1.00 0.00 ATOM 154 CB ASP O 375 107.386 345.865 323.949 1.00 0.00 ATOM 155 CG ASP O 375 106.051 345.810 324.666 1.00 0.00 ATOM 156 OD1 ASP O 375 105.180 345.022 324.242 1.00 0.00 ATOM 157 OD2 ASP O 375 105.878 346.555 325.654 1.00 0.00 ATOM 158 N GLN O 376 109.995 344.856 322.533 1.00 0.00 ATOM 159 CA GLN O 376 111.218 345.123 321.769 1.00 0.00 ATOM 160 C GLN O 376 111.198 344.180 320.567 1.00 0.00 ATOM 161 O GLN O 376 111.356 344.590 319.417 1.00 0.00 ATOM 162 CB GLN O 376 112.454 344.922 322.648 1.00 0.00 ATOM 163 CG GLN O 376 112.626 345.978 323.728 1.00 0.00 ATOM 164 CD GLN O 376 113.794 345.686 324.649 1.00 0.00 ATOM 165 OE1 GLN O 376 114.295 344.562 324.693 1.00 0.00 ATOM 166 NE2 GLN O 376 114.232 346.698 325.388 1.00 0.00 ATOM 167 N VAL O 377 111.014 342.832 320.755 1.00 0.00 ATOM 168 CA VAL O 377 111.010 341.813 319.738 1.00 0.00 ATOM 169 C VAL O 377 109.983 342.082 318.662 1.00 0.00 ATOM 170 O VAL O 377 110.258 342.017 317.447 1.00 0.00 ATOM 171 CB VAL O 377 110.758 340.418 320.339 1.00 0.00 ATOM 172 CG1 VAL O 377 110.543 339.394 319.235 1.00 0.00 ATOM 173 CG2 VAL O 377 111.917 340.006 321.234 1.00 0.00 ATOM 174 N GLU O 378 108.693 342.469 319.018 1.00 0.00 ATOM 175 CA GLU O 378 107.546 342.653 318.285 1.00 0.00 ATOM 176 C GLU O 378 107.718 343.765 317.275 1.00 0.00 ATOM 177 O GLU O 378 107.278 343.590 316.146 1.00 0.00 ATOM 178 CB GLU O 378 106.365 342.960 319.208 1.00 0.00 ATOM 179 CG GLU O 378 105.038 343.123 318.484 1.00 0.00 ATOM 180 CD GLU O 378 103.880 343.349 319.436 1.00 0.00 ATOM 181 OE1 GLU O 378 104.117 343.398 320.661 1.00 0.00 ATOM 182 OE2 GLU O 378 102.733 343.478 318.957 1.00 0.00 ATOM 183 N LYS O 379 108.421 344.867 317.677 1.00 0.00 ATOM 184 CA LYS O 379 108.785 346.018 316.768 1.00 0.00 ATOM 185 C LYS O 379 109.622 345.648 315.572 1.00 0.00 ATOM 186 O LYS O 379 109.178 345.911 314.457 1.00 0.00 ATOM 187 CB LYS O 379 109.534 347.100 317.548 1.00 0.00 ATOM 188 CG LYS O 379 109.925 348.309 316.713 1.00 0.00 ATOM 189 CD LYS O 379 110.620 349.363 317.560 1.00 0.00 ATOM 190 CE LYS O 379 111.042 350.557 316.718 1.00 0.00 ATOM 191 NZ LYS O 379 111.724 351.598 317.534 1.00 0.00 ATOM 192 N LEU O 380 110.757 344.880 315.833 1.00 0.00 ATOM 193 CA LEU O 380 111.648 344.329 314.876 1.00 0.00 ATOM 194 C LEU O 380 110.918 343.421 313.870 1.00 0.00 ATOM 195 O LEU O 380 111.107 343.411 312.642 1.00 0.00 ATOM 196 CB LEU O 380 112.760 343.540 315.570 1.00 0.00 ATOM 197 CG LEU O 380 113.781 344.361 316.361 1.00 0.00 ATOM 198 CD1 LEU O 380 114.700 343.450 317.160 1.00 0.00 ATOM 199 CD2 LEU O 380 114.594 345.248 315.431 1.00 0.00 ATOM 200 N GLY O 381 110.066 342.562 314.502 1.00 0.00 ATOM 201 CA GLY O 381 109.268 341.668 313.704 1.00 0.00 ATOM 202 C GLY O 381 108.305 342.330 312.760 1.00 0.00 ATOM 203 O GLY O 381 108.280 342.101 311.567 1.00 0.00 ATOM 204 N LYS O 382 107.550 343.310 313.262 1.00 0.00 ATOM 205 CA LYS O 382 106.616 344.109 312.524 1.00 0.00 ATOM 206 C LYS O 382 107.118 344.833 311.260 1.00 0.00 ATOM 207 O LYS O 382 106.508 344.794 310.156 1.00 0.00 ATOM 208 CB LYS O 382 106.009 345.190 313.421 1.00 0.00 ATOM 209 CG LYS O 382 104.984 346.070 312.725 1.00 0.00 ATOM 210 CD LYS O 382 104.393 347.092 313.683 1.00 0.00 ATOM 211 CE LYS O 382 103.399 348.000 312.977 1.00 0.00 ATOM 212 NZ LYS O 382 102.812 349.006 313.904 1.00 0.00 ATOM 213 N LYS O 383 108.287 345.570 311.497 1.00 0.00 ATOM 214 CA LYS O 383 108.986 346.233 310.461 1.00 0.00 ATOM 215 C LYS O 383 109.443 345.309 309.384 1.00 0.00 ATOM 216 O LYS O 383 109.099 345.463 308.220 1.00 0.00 ATOM 217 CB LYS O 383 110.195 346.982 311.023 1.00 0.00 ATOM 218 CG LYS O 383 109.838 348.205 311.852 1.00 0.00 ATOM 219 CD LYS O 383 111.082 348.889 312.395 1.00 0.00 ATOM 220 CE LYS O 383 110.723 350.095 313.247 1.00 0.00 ATOM 221 NZ LYS O 383 111.932 350.748 313.821 1.00 0.00 ATOM 222 N MET O 384 110.085 344.145 309.784 1.00 0.00 ATOM 223 CA MET O 384 110.534 343.192 308.800 1.00 0.00 ATOM 224 C MET O 384 109.373 342.663 307.891 1.00 0.00 ATOM 225 O MET O 384 109.526 342.527 306.703 1.00 0.00 ATOM 226 CB MET O 384 111.222 342.006 309.478 1.00 0.00 ATOM 227 CG MET O 384 112.578 342.335 310.080 1.00 0.00 ATOM 228 SD MET O 384 113.470 340.868 310.629 1.00 0.00 ATOM 229 CE MET O 384 112.555 340.448 312.109 1.00 0.00 ATOM 230 N GLU O 385 108.256 342.267 308.542 1.00 0.00 ATOM 231 CA GLU O 385 107.020 341.698 308.034 1.00 0.00 ATOM 232 C GLU O 385 106.457 342.506 306.985 1.00 0.00 ATOM 233 O GLU O 385 105.979 341.972 305.970 1.00 0.00 ATOM 234 CB GLU O 385 106.001 341.533 309.163 1.00 0.00 ATOM 235 CG GLU O 385 104.690 340.897 308.729 1.00 0.00 ATOM 236 CD GLU O 385 103.721 340.717 309.880 1.00 0.00 ATOM 237 OE1 GLU O 385 104.067 341.105 311.015 1.00 0.00 ATOM 238 OE2 GLU O 385 102.615 340.186 309.647 1.00 0.00 ATOM 239 N ALA O 386 106.420 343.801 307.229 1.00 0.00 ATOM 240 CA ALA O 386 105.714 344.793 306.381 1.00 0.00 ATOM 241 C ALA O 386 106.339 344.924 305.011 1.00 0.00 ATOM 242 O ALA O 386 105.617 344.710 304.090 1.00 0.00 ATOM 243 CB ALA O 386 105.694 346.153 307.062 1.00 0.00 ATOM 244 N ARG O 387 107.686 345.199 304.930 1.00 0.00 ATOM 245 CA ARG O 387 108.401 345.222 303.676 1.00 0.00 ATOM 246 C ARG O 387 108.728 343.803 303.107 1.00 0.00 ATOM 247 O ARG O 387 109.626 343.090 303.568 1.00 0.00 ATOM 248 CB ARG O 387 109.710 346.001 303.819 1.00 0.00 ATOM 249 CG ARG O 387 109.522 347.474 304.143 1.00 0.00 ATOM 250 CD ARG O 387 110.859 348.192 304.247 1.00 0.00 ATOM 251 NE ARG O 387 110.693 349.628 304.459 1.00 0.00 ATOM 252 CZ ARG O 387 110.497 350.190 305.647 1.00 0.00 ATOM 253 NH1 ARG O 387 110.440 349.435 306.737 1.00 0.00 ATOM 254 NH2 ARG O 387 110.357 351.505 305.744 1.00 0.00 TER