HEADER RIBOSOME 27-AUG-15 5DGE TITLE Coping with proline stalling: structural basis of hypusine-induced TITLE 2 protein synthesis by the eukaryotic ribosome COMPND MOL_ID: 83; COMPND 2 MOLECULE: 60S acidic ribosomal protein P1-alpha; COMPND 3 CHAIN: p1, p2; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.45 ANGSTORMS DBREF 5DGE p 1 106 UNP P05318 RLA1_YEAST 1 106 SEQRES 1 p1 47 MET SER THR GLU SER ALA LEU SER TYR ALA ALA LEU ILE SEQRES 2 p1 47 LEU ALA ASP SER GLU ILE GLU ILE SER SER GLU LYS LEU SEQRES 3 p1 47 LEU THR LEU THR ASN ALA ALA ASN VAL PRO VAL GLU ASN SEQRES 4 p1 47 ILE TRP ALA ASP ILE PHE ALA LYS ATOM 1 N MET p 1 112.922 26.440 366.795 1.00230.12 ATOM 2 CA MET p 1 113.931 26.044 365.819 1.00230.12 ATOM 3 C MET p 1 113.824 24.556 365.477 1.00230.10 ATOM 4 O MET p 1 113.288 23.769 366.258 1.00230.08 ATOM 5 CB MET p 1 115.321 26.373 366.338 1.00230.11 ATOM 6 N SER p 2 114.339 24.181 364.308 1.00228.41 ATOM 7 CA SER p 2 114.242 22.809 363.817 1.00228.39 ATOM 8 C SER p 2 115.170 21.858 364.568 1.00228.38 ATOM 9 O SER p 2 114.750 20.784 364.997 1.00228.35 ATOM 10 CB SER p 2 114.540 22.763 362.327 1.00228.41 ATOM 11 N THR p 3 116.432 22.251 364.714 1.00226.93 ATOM 12 CA THR p 3 117.405 21.451 365.451 1.00226.92 ATOM 13 C THR p 3 117.529 21.935 366.894 1.00226.90 ATOM 14 O THR p 3 118.604 21.876 367.489 1.00226.89 ATOM 15 CB THR p 3 118.760 21.489 364.759 1.00226.94 ATOM 16 N GLU p 4 116.417 22.413 367.446 1.00231.82 ATOM 17 CA GLU p 4 116.372 22.873 368.830 1.00231.80 ATOM 18 C GLU p 4 114.971 22.711 369.420 1.00231.78 ATOM 19 O GLU p 4 114.612 23.388 370.383 1.00231.76 ATOM 20 CB GLU p 4 116.823 24.323 368.924 1.00231.82 ATOM 21 N SER p 5 114.185 21.812 368.833 1.00235.44 ATOM 22 CA SER p 5 112.842 21.517 369.324 1.00235.42 ATOM 23 C SER p 5 112.828 20.205 370.102 1.00235.40 ATOM 24 O SER p 5 112.508 20.181 371.291 1.00235.39 ATOM 25 CB SER p 5 111.852 21.460 368.170 1.00235.43 ATOM 26 N ALA p 6 113.174 19.115 369.423 1.00238.63 ATOM 27 CA ALA p 6 113.267 17.808 370.065 1.00238.61 ATOM 28 C ALA p 6 114.583 17.678 370.829 1.00238.60 ATOM 29 O ALA p 6 114.683 16.900 371.777 1.00238.58 ATOM 30 CB ALA p 6 113.133 16.694 369.037 1.00238.63 ATOM 31 N LEU p 7 115.590 18.441 370.409 1.00237.90 ATOM 32 CA LEU p 7 116.859 18.495 371.125 1.00237.90 ATOM 33 C LEU p 7 116.645 19.148 372.483 1.00237.88 ATOM 34 O LEU p 7 117.329 18.825 373.452 1.00237.88 ATOM 35 CB LEU p 7 117.902 19.254 370.322 1.00237.91 ATOM 36 N SER p 8 115.687 20.069 372.536 1.00239.70 ATOM 37 CA SER p 8 115.282 20.703 373.786 1.00239.68 ATOM 38 C SER p 8 114.301 19.808 374.537 1.00239.66 ATOM 39 O SER p 8 114.194 19.879 375.761 1.00239.64 ATOM 40 CB SER p 8 114.664 22.066 373.519 1.00239.69 ATOM 41 N TYR p 9 113.586 18.968 373.792 1.00242.07 ATOM 42 CA TYR p 9 112.752 17.928 374.386 1.00242.06 ATOM 43 C TYR p 9 113.638 16.762 374.804 1.00242.05 ATOM 44 O TYR p 9 113.174 15.796 375.408 1.00242.03 ATOM 45 CB TYR p 9 111.675 17.469 373.412 1.00242.07 ATOM 46 N ALA p 10 114.918 16.864 374.453 1.00241.18 ATOM 47 CA ALA p 10 115.944 15.945 374.923 1.00241.16 ATOM 48 C ALA p 10 116.770 16.630 376.005 1.00241.15 ATOM 49 O ALA p 10 117.355 15.971 376.863 1.00241.14 ATOM 50 CB ALA p 10 116.832 15.492 373.775 1.00241.18 ATOM 51 N ALA p 11 116.805 17.961 375.955 1.00241.55 ATOM 52 CA ALA p 11 117.484 18.768 376.969 1.00241.54 ATOM 53 C ALA p 11 116.556 19.053 378.147 1.00241.52 ATOM 54 O ALA p 11 116.776 19.988 378.920 1.00241.51 ATOM 55 CB ALA p 11 117.990 20.069 376.367 1.00241.56 ATOM 56 N LEU p 12 115.512 18.238 378.265 1.00245.11 ATOM 57 CA LEU p 12 114.565 18.325 379.368 1.00245.10 ATOM 58 C LEU p 12 113.877 16.976 379.572 1.00245.08 ATOM 59 O LEU p 12 112.853 16.886 380.252 1.00245.06 ATOM 60 CB LEU p 12 113.541 19.419 379.111 1.00245.10 ATOM 61 N ILE p 13 114.446 15.933 378.971 1.00242.86 ATOM 62 CA ILE p 13 113.953 14.569 379.145 1.00242.84 ATOM 63 C ILE p 13 115.103 13.565 379.183 1.00242.84 ATOM 64 O ILE p 13 116.265 13.930 378.996 1.00242.85 ATOM 65 CB ILE p 13 112.971 14.209 378.041 1.00242.86 ATOM 66 N LEU p 14 114.756 12.302 379.425 1.00240.29 ATOM 67 CA LEU p 14 115.725 11.217 379.578 1.00240.28 ATOM 68 C LEU p 14 116.711 11.499 380.708 1.00240.28 ATOM 69 O LEU p 14 116.314 11.700 381.855 1.00240.27 ATOM 70 CB LEU p 14 116.466 10.973 378.270 1.00240.30 ATOM 71 N ALA p 15 117.997 11.502 380.381 1.00237.82 ATOM 72 CA ALA p 15 119.032 11.798 381.362 1.00237.82 ATOM 73 C ALA p 15 120.142 12.614 380.716 1.00237.84 ATOM 74 O ALA p 15 120.042 13.836 380.613 1.00237.85 ATOM 75 CB ALA p 15 119.587 10.515 381.963 1.00237.80 ATOM 76 N ASP p 16 121.195 11.935 380.271 1.00235.76 ATOM 77 CA ASP p 16 122.300 12.597 379.584 1.00235.78 ATOM 78 C ASP p 16 121.915 12.948 378.147 1.00235.80 ATOM 79 O ASP p 16 120.762 13.285 377.871 1.00235.80 ATOM 80 CB ASP p 16 123.542 11.718 379.606 1.00235.77 ATOM 81 N SER p 17 122.879 12.866 377.233 1.00233.31 ATOM 82 CA SER p 17 122.631 13.199 375.831 1.00233.33 ATOM 83 C SER p 17 123.588 12.482 374.877 1.00233.35 ATOM 84 O SER p 17 124.525 13.089 374.358 1.00233.37 ATOM 85 CB SER p 17 122.726 14.705 375.629 1.00233.34 ATOM 86 N GLU p 18 123.337 11.197 374.639 1.00230.34 ATOM 87 CA GLU p 18 124.179 10.400 373.749 1.00230.35 ATOM 88 C GLU p 18 123.614 10.362 372.333 1.00230.37 ATOM 89 O GLU p 18 122.475 10.763 372.095 1.00230.37 ATOM 90 CB GLU p 18 124.337 8.984 374.292 1.00230.34 ATOM 91 N ILE p 19 124.422 9.879 371.396 1.00228.57 ATOM 92 CA ILE p 19 123.992 9.759 370.011 1.00228.58 ATOM 93 C ILE p 19 122.925 8.676 369.877 1.00228.57 ATOM 94 O ILE p 19 121.971 8.821 369.112 1.00228.57 ATOM 95 CB ILE p 19 125.180 9.459 369.110 1.00228.60 ATOM 96 N GLU p 20 123.086 7.595 370.637 1.00229.14 ATOM 97 CA GLU p 20 122.136 6.487 370.614 1.00229.12 ATOM 98 C GLU p 20 120.907 6.795 371.464 1.00229.11 ATOM 99 O GLU p 20 120.001 5.969 371.584 1.00229.11 ATOM 100 CB GLU p 20 122.806 5.206 371.096 1.00229.10 ATOM 101 N ILE p 21 120.883 7.991 372.046 1.00228.38 ATOM 102 CA ILE p 21 119.806 8.394 372.941 1.00228.37 ATOM 103 C ILE p 21 118.653 9.054 372.192 1.00228.39 ATOM 104 O ILE p 21 117.547 8.516 372.140 1.00228.38 ATOM 105 CB ILE p 21 120.338 9.330 374.013 1.00228.36 ATOM 106 N SER p 22 118.916 10.222 371.614 1.00226.54 ATOM 107 CA SER p 22 117.881 10.983 370.922 1.00226.56 ATOM 108 C SER p 22 117.351 10.249 369.688 1.00226.57 ATOM 109 O SER p 22 116.252 10.540 369.213 1.00226.58 ATOM 110 CB SER p 22 118.413 12.355 370.534 1.00226.57 ATOM 111 N SER p 23 118.131 9.295 369.183 1.00226.70 ATOM 112 CA SER p 23 117.777 8.549 367.973 1.00226.72 ATOM 113 C SER p 23 116.706 7.491 368.232 1.00226.70 ATOM 114 O SER p 23 116.102 6.966 367.296 1.00226.72 ATOM 115 CB SER p 23 119.017 7.902 367.375 1.00226.73 ATOM 116 N GLU p 24 116.484 7.171 369.501 1.00225.52 ATOM 117 CA GLU p 24 115.391 6.289 369.879 1.00225.51 ATOM 118 C GLU p 24 114.193 7.127 370.313 1.00225.50 ATOM 119 O GLU p 24 113.221 6.609 370.862 1.00225.49 ATOM 120 CB GLU p 24 115.822 5.346 370.984 1.00225.49 ATOM 121 N LYS p 25 114.275 8.430 370.055 1.00224.25 ATOM 122 CA LYS p 25 113.232 9.369 370.451 1.00224.25 ATOM 123 C LYS p 25 112.623 10.089 369.247 1.00224.27 ATOM 124 O LYS p 25 111.411 10.044 369.037 1.00224.27 ATOM 125 CB LYS p 25 113.786 10.379 371.440 1.00224.24 ATOM 126 N LEU p 26 113.465 10.758 368.466 1.00222.71 ATOM 127 CA LEU p 26 113.006 11.450 367.264 1.00222.73 ATOM 128 C LEU p 26 112.496 10.449 366.231 1.00222.74 ATOM 129 O LEU p 26 111.558 10.734 365.486 1.00222.75 ATOM 130 CB LEU p 26 114.121 12.300 366.679 1.00222.75 ATOM 131 N LEU p 27 113.123 9.276 366.196 1.00223.68 ATOM 132 CA LEU p 27 112.652 8.168 365.372 1.00223.69 ATOM 133 C LEU p 27 111.675 7.316 366.173 1.00223.67 ATOM 134 O LEU p 27 111.659 6.090 366.061 1.00223.68 ATOM 135 CB LEU p 27 113.819 7.326 364.879 1.00223.69 ATOM 136 N THR p 28 110.870 7.987 366.993 1.00223.85 ATOM 137 CA THR p 28 109.852 7.337 367.807 1.00223.83 ATOM 138 C THR p 28 108.683 8.289 368.041 1.00223.84 ATOM 139 O THR p 28 107.574 7.862 368.358 1.00223.83 ATOM 140 CB THR p 28 110.441 6.873 369.130 1.00223.81 ATOM 141 N LEU p 29 108.939 9.584 367.874 1.00223.27 ATOM 142 CA LEU p 29 107.905 10.600 368.035 1.00223.27 ATOM 143 C LEU p 29 107.131 10.805 366.736 1.00223.29 ATOM 144 O LEU p 29 106.398 11.786 366.589 1.00223.30 ATOM 145 CB LEU p 29 108.521 11.911 368.497 1.00223.28 ATOM 146 N THR p 30 107.321 9.877 365.796 1.00222.49 ATOM 147 CA THR p 30 106.698 9.912 364.468 1.00222.52 ATOM 148 C THR p 30 107.066 11.169 363.678 1.00222.54 ATOM 149 O THR p 30 106.533 11.407 362.593 1.00222.56 ATOM 150 CB THR p 30 105.182 9.788 364.586 1.00222.51 ATOM 151 N ASN p 31 107.992 11.956 364.220 1.00221.21 ATOM 152 CA ASN p 31 108.415 13.210 363.610 1.00221.22 ATOM 153 C ASN p 31 109.859 13.535 363.985 1.00221.22 ATOM 154 O ASN p 31 110.109 14.264 364.945 1.00221.20 ATOM 155 CB ASN p 31 107.488 14.344 364.031 1.00221.22 ATOM 156 N ALA p 32 110.804 12.986 363.226 1.00213.43 ATOM 157 CA ALA p 32 112.222 13.235 363.462 1.00213.42 ATOM 158 C ALA p 32 112.669 14.545 362.812 1.00213.44 ATOM 159 O ALA p 32 111.898 15.195 362.103 1.00213.45 ATOM 160 CB ALA p 32 113.058 12.070 362.945 1.00213.42 ATOM 161 N ALA p 33 113.916 14.931 363.061 1.00202.01 ATOM 162 CA ALA p 33 114.468 16.156 362.493 1.00202.03 ATOM 163 C ALA p 33 114.977 15.915 361.074 1.00202.05 ATOM 164 O ALA p 33 114.234 16.062 360.100 1.00202.06 ATOM 165 CB ALA p 33 115.586 16.697 363.378 1.00202.02 ATOM 166 N ASN p 34 116.248 15.542 360.967 1.00191.52 ATOM 167 CA ASN p 34 116.863 15.262 359.676 1.00191.54 ATOM 168 C ASN p 34 118.024 14.276 359.816 1.00191.53 ATOM 169 O ASN p 34 118.849 14.153 358.908 1.00191.55 ATOM 170 CB ASN p 34 117.339 16.558 359.026 1.00191.56 ATOM 171 N VAL p 35 118.082 13.593 360.962 1.00182.86 ATOM 172 CA VAL p 35 119.157 12.649 361.315 1.00182.85 ATOM 173 C VAL p 35 120.521 13.334 361.484 1.00182.86 ATOM 174 O VAL p 35 121.308 12.951 362.356 1.00182.84 ATOM 175 CB VAL p 35 119.252 11.524 360.279 1.00182.86 ATOM 176 N PRO p 36 120.789 14.336 360.647 1.00178.53 ATOM 177 CA PRO p 36 121.996 15.157 360.744 1.00178.54 ATOM 178 C PRO p 36 121.754 16.360 361.655 1.00178.53 ATOM 179 O PRO p 36 122.690 16.895 362.255 1.00178.53 ATOM 180 CB PRO p 36 122.447 15.617 359.358 1.00178.57 ATOM 181 N VAL p 37 120.493 16.781 361.752 1.00187.57 ATOM 182 CA VAL p 37 120.092 17.805 362.712 1.00187.57 ATOM 183 C VAL p 37 120.091 17.218 364.123 1.00187.54 ATOM 184 O VAL p 37 119.989 17.949 365.111 1.00187.53 ATOM 185 CB VAL p 37 118.717 18.368 362.361 1.00187.57 ATOM 186 N GLU p 38 120.213 15.892 364.197 1.00185.54 ATOM 187 CA GLU p 38 120.244 15.153 365.458 1.00185.51 ATOM 188 C GLU p 38 121.675 14.862 365.918 1.00185.51 ATOM 189 O GLU p 38 122.015 15.089 367.080 1.00185.49 ATOM 190 CB GLU p 38 119.458 13.852 365.324 1.00185.50 ATOM 191 N ASN p 39 122.506 14.357 365.006 1.00182.97 ATOM 192 CA ASN p 39 123.902 14.046 365.316 1.00182.98 ATOM 193 C ASN p 39 124.684 15.306 365.684 1.00182.98 ATOM 194 O ASN p 39 125.736 15.232 366.323 1.00182.97 ATOM 195 CB ASN p 39 124.561 13.335 364.142 1.00183.00 ATOM 196 N ILE p 40 124.160 16.459 365.276 1.00183.89 ATOM 197 CA ILE p 40 124.741 17.749 365.627 1.00183.90 ATOM 198 C ILE p 40 124.624 18.006 367.125 1.00183.87 ATOM 199 O ILE p 40 125.474 18.670 367.717 1.00183.87 ATOM 200 CB ILE p 40 124.067 18.870 364.841 1.00183.92 ATOM 201 N TRP p 41 123.568 17.471 367.732 1.00186.73 ATOM 202 CA TRP p 41 123.337 17.633 369.165 1.00186.71 ATOM 203 C TRP p 41 124.340 16.818 369.979 1.00186.69 ATOM 204 O TRP p 41 124.521 17.047 371.176 1.00186.68 ATOM 205 CB TRP p 41 121.909 17.236 369.522 1.00186.70 ATOM 206 N ALA p 42 124.990 15.865 369.321 1.00187.08 ATOM 207 CA ALA p 42 126.062 15.107 369.945 1.00187.07 ATOM 208 C ALA p 42 127.406 15.753 369.630 1.00187.08 ATOM 209 O ALA p 42 128.394 15.057 369.401 1.00187.07 ATOM 210 CB ALA p 42 126.038 13.662 369.474 1.00187.07 ATOM 211 N ASP p 43 127.438 17.086 369.624 1.00189.11 ATOM 212 CA ASP p 43 128.655 17.823 369.273 1.00189.12 ATOM 213 C ASP p 43 128.704 19.277 369.791 1.00189.12 ATOM 214 O ASP p 43 129.708 19.693 370.378 1.00189.12 ATOM 215 CB ASP p 43 128.839 17.809 367.758 1.00189.15 ATOM 216 N ILE p 44 127.635 20.044 369.573 1.00192.13 ATOM 217 CA ILE p 44 127.631 21.479 369.887 1.00192.13 ATOM 218 C ILE p 44 127.210 21.789 371.327 1.00192.10 ATOM 219 O ILE p 44 127.325 22.928 371.785 1.00192.10 ATOM 220 CB ILE p 44 126.728 22.224 368.909 1.00192.14 ATOM 221 N PHE p 45 126.721 20.777 372.035 1.00192.34 ATOM 222 CA PHE p 45 126.322 20.938 373.427 1.00192.32 ATOM 223 C PHE p 45 126.871 19.799 374.281 1.00192.31 ATOM 224 O PHE p 45 126.172 19.267 375.144 1.00192.28 ATOM 225 CB PHE p 45 124.806 21.009 373.538 1.00192.31 ATOM 226 N ALA p 46 128.126 19.431 374.038 1.00192.14 ATOM 227 CA ALA p 46 128.755 18.314 374.738 1.00192.13 ATOM 228 C ALA p 46 129.025 18.649 376.199 1.00192.12 ATOM 229 O ALA p 46 129.560 19.714 376.505 1.00192.13 ATOM 230 CB ALA p 46 130.048 17.915 374.042 1.00192.15 ATOM 231 N LYS p 47 128.651 17.730 377.088 1.00191.40 ATOM 232 CA LYS p 47 128.846 17.886 378.529 1.00191.39 ATOM 233 C LYS p 47 128.260 19.194 379.055 1.00191.39 ATOM 234 O LYS p 47 128.878 19.881 379.869 1.00191.40 ATOM 235 CB LYS p 47 130.327 17.794 378.876 1.00191.40 TER