HEADER Ribosome 28-AUG-15 5DGV TITLE Complex of yeast 80S ribosome with hypusine-containing/non-modified TITLE 2 eIF5A and/or a peptidyl-tRNA analog COMPND MOL_ID: 77; COMPND 2 MOLECULE: 60S ribosomal protein L41-A; COMPND 3 CHAIN: Q1, q1; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.10 ANGSTORMS DBREF 5DGV Q 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 Q1 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 Q1 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET Q 1 -48.056 -4.491 78.333 1.00 57.68 ATOM 2 CA MET Q 1 -47.195 -4.971 79.404 1.00 57.61 ATOM 3 C MET Q 1 -47.631 -4.406 80.752 1.00 57.63 ATOM 4 O MET Q 1 -48.201 -3.317 80.810 1.00 57.71 ATOM 5 CB MET Q 1 -45.744 -4.604 79.115 1.00 57.57 ATOM 6 CG MET Q 1 -45.459 -3.121 79.077 1.00 57.61 ATOM 7 SD MET Q 1 -43.692 -2.791 78.879 1.00 57.56 ATOM 8 CE MET Q 1 -43.025 -3.732 80.249 1.00 57.46 ATOM 9 N ARG Q 2 -47.375 -5.154 81.824 1.00 57.21 ATOM 10 CA ARG Q 2 -47.735 -4.724 83.176 1.00 57.22 ATOM 11 C ARG Q 2 -47.303 -3.277 83.382 1.00 57.26 ATOM 12 O ARG Q 2 -46.202 -2.892 83.000 1.00 57.24 ATOM 13 CB ARG Q 2 -47.107 -5.655 84.233 1.00 57.14 ATOM 14 CG ARG Q 2 -47.009 -5.099 85.667 1.00 57.14 ATOM 15 CD ARG Q 2 -47.856 -5.886 86.676 1.00 57.13 ATOM 16 NE ARG Q 2 -47.091 -6.836 87.493 1.00 57.04 ATOM 17 CZ ARG Q 2 -47.108 -6.877 88.829 1.00 57.02 ATOM 18 NH1 ARG Q 2 -47.834 -6.016 89.520 1.00 57.07 ATOM 19 NH2 ARG Q 2 -46.391 -7.777 89.485 1.00 56.94 ATOM 20 N ALA Q 3 -48.198 -2.477 83.951 1.00 56.86 ATOM 21 CA ALA Q 3 -48.004 -1.040 84.075 1.00 56.92 ATOM 22 C ALA Q 3 -46.722 -0.663 84.809 1.00 56.87 ATOM 23 O ALA Q 3 -46.038 0.278 84.410 1.00 56.87 ATOM 24 CB ALA Q 3 -49.198 -0.423 84.770 1.00 56.99 ATOM 25 N LYS Q 4 -46.390 -1.381 85.879 1.00 56.20 ATOM 26 CA LYS Q 4 -45.192 -1.049 86.636 1.00 56.14 ATOM 27 C LYS Q 4 -43.930 -1.454 85.885 1.00 56.09 ATOM 28 O LYS Q 4 -42.948 -0.728 85.914 1.00 56.09 ATOM 29 CB LYS Q 4 -45.216 -1.695 88.018 1.00 56.08 ATOM 30 CG LYS Q 4 -44.994 -3.186 88.049 1.00 56.00 ATOM 31 CD LYS Q 4 -44.459 -3.630 89.402 1.00 56.01 ATOM 32 CE LYS Q 4 -45.427 -3.339 90.535 1.00 55.97 ATOM 33 NZ LYS Q 4 -44.788 -3.593 91.851 1.00 55.97 ATOM 34 N TRP Q 5 -43.956 -2.600 85.204 1.00 58.19 ATOM 35 CA TRP Q 5 -42.839 -3.010 84.358 1.00 58.14 ATOM 36 C TRP Q 5 -42.650 -1.981 83.249 1.00 58.20 ATOM 37 O TRP Q 5 -41.535 -1.736 82.790 1.00 58.17 ATOM 38 CB TRP Q 5 -43.060 -4.391 83.732 1.00 58.09 ATOM 39 CG TRP Q 5 -43.295 -5.575 84.638 1.00 58.03 ATOM 40 CD1 TRP Q 5 -43.948 -6.717 84.293 1.00 58.01 ATOM 41 CD2 TRP Q 5 -42.862 -5.764 85.998 1.00 57.99 ATOM 42 NE1 TRP Q 5 -43.972 -7.598 85.344 1.00 57.96 ATOM 43 CE2 TRP Q 5 -43.312 -7.039 86.404 1.00 57.94 ATOM 44 CE3 TRP Q 5 -42.148 -4.983 86.914 1.00 57.99 ATOM 45 CZ2 TRP Q 5 -43.077 -7.547 87.680 1.00 57.89 ATOM 46 CZ3 TRP Q 5 -41.912 -5.495 88.184 1.00 57.94 ATOM 47 CH2 TRP Q 5 -42.387 -6.759 88.555 1.00 57.89 ATOM 48 N ARG Q 6 -43.761 -1.405 82.805 1.00 59.49 ATOM 49 CA ARG Q 6 -43.746 -0.285 81.875 1.00 59.54 ATOM 50 C ARG Q 6 -43.179 0.939 82.582 1.00 59.57 ATOM 51 O ARG Q 6 -42.411 1.695 82.003 1.00 59.59 ATOM 52 CB ARG Q 6 -45.159 -0.010 81.349 1.00 59.62 ATOM 53 CG ARG Q 6 -45.341 1.274 80.547 1.00 59.69 ATOM 54 CD ARG Q 6 -44.848 1.110 79.125 1.00 59.72 ATOM 55 NE ARG Q 6 -45.347 2.149 78.224 1.00 59.81 ATOM 56 CZ ARG Q 6 -44.836 3.378 78.130 1.00 59.85 ATOM 57 NH1 ARG Q 6 -43.809 3.741 78.897 1.00 59.81 ATOM 58 NH2 ARG Q 6 -45.353 4.249 77.265 1.00 59.93 ATOM 59 N LYS Q 7 -43.556 1.119 83.843 1.00 57.70 ATOM 60 CA LYS Q 7 -43.047 2.219 84.651 1.00 57.72 ATOM 61 C LYS Q 7 -41.551 2.060 84.935 1.00 57.65 ATOM 62 O LYS Q 7 -40.781 3.015 84.836 1.00 57.66 ATOM 63 CB LYS Q 7 -43.830 2.305 85.960 1.00 57.75 ATOM 64 CG LYS Q 7 -43.400 3.417 86.909 1.00 57.78 ATOM 65 CD LYS Q 7 -44.277 3.405 88.153 1.00 57.76 ATOM 66 CE LYS Q 7 -43.912 4.504 89.132 1.00 57.80 ATOM 67 NZ LYS Q 7 -44.886 4.578 90.274 1.00 57.85 ATOM 68 N LYS Q 8 -41.144 0.850 85.296 1.00 57.44 ATOM 69 CA LYS Q 8 -39.733 0.559 85.516 1.00 57.37 ATOM 70 C LYS Q 8 -38.937 0.773 84.236 1.00 57.36 ATOM 71 O LYS Q 8 -37.782 1.189 84.279 1.00 57.33 ATOM 72 CB LYS Q 8 -39.546 -0.876 86.017 1.00 57.29 ATOM 73 CG LYS Q 8 -38.114 -1.383 85.965 1.00 57.21 ATOM 74 CD LYS Q 8 -38.085 -2.894 85.925 1.00 57.13 ATOM 75 CE LYS Q 8 -38.422 -3.494 87.276 1.00 57.10 ATOM 76 NZ LYS Q 8 -37.204 -3.720 88.106 1.00 57.05 ATOM 77 N ARG Q 9 -39.563 0.492 83.098 1.00 57.16 ATOM 78 CA ARG Q 9 -38.880 0.565 81.810 1.00 57.17 ATOM 79 C ARG Q 9 -38.395 1.980 81.539 1.00 57.22 ATOM 80 O ARG Q 9 -37.230 2.181 81.169 1.00 57.20 ATOM 81 CB ARG Q 9 -39.799 0.093 80.685 1.00 57.20 ATOM 82 CG ARG Q 9 -39.157 -0.032 79.313 1.00 57.17 ATOM 83 CD ARG Q 9 -40.261 0.105 78.278 1.00 57.24 ATOM 84 NE ARG Q 9 -40.251 -0.825 77.142 1.00 57.23 ATOM 85 CZ ARG Q 9 -40.153 -2.149 77.213 1.00 57.16 ATOM 86 NH1 ARG Q 9 -39.998 -2.769 78.375 1.00 57.09 ATOM 87 NH2 ARG Q 9 -40.192 -2.860 76.099 1.00 57.17 ATOM 88 N THR Q 10 -39.275 2.960 81.741 1.00 55.13 ATOM 89 CA THR Q 10 -38.896 4.343 81.499 1.00 55.18 ATOM 90 C THR Q 10 -38.025 4.863 82.647 1.00 55.16 ATOM 91 O THR Q 10 -37.224 5.776 82.471 1.00 55.17 ATOM 92 CB THR Q 10 -40.127 5.244 81.303 1.00 55.27 ATOM 93 OG1 THR Q 10 -40.547 5.778 82.556 1.00 55.31 ATOM 94 CG2 THR Q 10 -41.259 4.464 80.687 1.00 55.28 ATOM 95 N ARG Q 11 -38.166 4.255 83.816 1.00 56.14 ATOM 96 CA ARG Q 11 -37.310 4.579 84.942 1.00 56.10 ATOM 97 C ARG Q 11 -35.844 4.294 84.604 1.00 56.05 ATOM 98 O ARG Q 11 -34.937 5.019 85.025 1.00 56.05 ATOM 99 CB ARG Q 11 -37.740 3.790 86.175 1.00 56.06 ATOM 100 CG ARG Q 11 -37.978 4.644 87.399 1.00 56.10 ATOM 101 CD ARG Q 11 -39.292 4.276 88.078 1.00 56.19 ATOM 102 NE ARG Q 11 -39.689 5.289 89.053 1.00 56.23 ATOM 103 CZ ARG Q 11 -40.501 5.071 90.083 1.00 56.20 ATOM 104 NH1 ARG Q 11 -41.009 3.866 90.297 1.00 56.13 ATOM 105 NH2 ARG Q 11 -40.796 6.062 90.914 1.00 56.25 ATOM 106 N ARG Q 12 -35.607 3.230 83.848 1.00 55.86 ATOM 107 CA ARG Q 12 -34.263 2.948 83.373 1.00 55.80 ATOM 108 C ARG Q 12 -33.892 3.956 82.297 1.00 55.84 ATOM 109 O ARG Q 12 -32.883 4.650 82.384 1.00 55.83 ATOM 110 CB ARG Q 12 -34.165 1.532 82.810 1.00 55.74 ATOM 111 CG ARG Q 12 -34.338 0.426 83.815 1.00 55.68 ATOM 112 CD ARG Q 12 -34.386 -0.898 83.093 1.00 55.63 ATOM 113 NE ARG Q 12 -34.707 -2.007 83.980 1.00 55.57 ATOM 114 CZ ARG Q 12 -35.063 -3.212 83.551 1.00 55.55 ATOM 115 NH1 ARG Q 12 -35.155 -3.439 82.249 1.00 55.58 ATOM 116 NH2 ARG Q 12 -35.341 -4.183 84.414 1.00 55.49 ATOM 117 N LEU Q 13 -34.742 4.026 81.282 1.00 55.87 ATOM 118 CA LEU Q 13 -34.488 4.812 80.088 1.00 55.91 ATOM 119 C LEU Q 13 -34.236 6.289 80.406 1.00 55.96 ATOM 120 O LEU Q 13 -33.563 6.981 79.648 1.00 55.97 ATOM 121 CB LEU Q 13 -35.668 4.638 79.121 1.00 55.98 ATOM 122 CG LEU Q 13 -35.731 5.234 77.709 1.00 56.03 ATOM 123 CD1 LEU Q 13 -36.297 6.614 77.789 1.00 56.11 ATOM 124 CD2 LEU Q 13 -34.382 5.231 76.977 1.00 55.99 ATOM 125 N LYS Q 14 -34.768 6.773 81.522 1.00 55.44 ATOM 126 CA LYS Q 14 -34.511 8.153 81.921 1.00 55.49 ATOM 127 C LYS Q 14 -33.081 8.266 82.423 1.00 55.43 ATOM 128 O LYS Q 14 -32.397 9.254 82.184 1.00 55.45 ATOM 129 CB LYS Q 14 -35.501 8.622 83.003 1.00 55.54 ATOM 130 CG LYS Q 14 -36.752 9.341 82.471 1.00 55.63 ATOM 131 CD LYS Q 14 -37.724 9.750 83.590 1.00 55.67 ATOM 132 CE LYS Q 14 -38.325 8.536 84.298 1.00 55.62 ATOM 133 NZ LYS Q 14 -39.209 8.905 85.452 1.00 55.68 ATOM 134 N ARG Q 15 -32.633 7.230 83.116 1.00 56.14 ATOM 135 CA ARG Q 15 -31.320 7.230 83.737 1.00 56.09 ATOM 136 C ARG Q 15 -30.191 7.130 82.700 1.00 56.05 ATOM 137 O ARG Q 15 -29.082 7.614 82.933 1.00 56.04 ATOM 138 CB ARG Q 15 -31.242 6.085 84.742 1.00 56.01 ATOM 139 CG ARG Q 15 -30.016 6.079 85.621 1.00 55.94 ATOM 140 CD ARG Q 15 -30.172 5.030 86.706 1.00 55.89 ATOM 141 NE ARG Q 15 -30.501 3.730 86.132 1.00 55.88 ATOM 142 CZ ARG Q 15 -31.388 2.885 86.643 1.00 55.84 ATOM 143 NH1 ARG Q 15 -32.046 3.205 87.750 1.00 55.80 ATOM 144 NH2 ARG Q 15 -31.614 1.721 86.045 1.00 55.83 ATOM 145 N LYS Q 16 -30.476 6.506 81.558 1.00 55.86 ATOM 146 CA LYS Q 16 -29.523 6.452 80.452 1.00 55.84 ATOM 147 C LYS Q 16 -29.381 7.826 79.794 1.00 55.91 ATOM 148 O LYS Q 16 -28.264 8.309 79.589 1.00 55.89 ATOM 149 CB LYS Q 16 -29.949 5.407 79.415 1.00 55.82 ATOM 150 CG LYS Q 16 -29.584 3.972 79.794 1.00 55.73 ATOM 151 CD LYS Q 16 -29.493 3.055 78.570 1.00 55.71 ATOM 152 CE LYS Q 16 -28.060 2.851 78.110 1.00 55.65 ATOM 153 NZ LYS Q 16 -27.420 4.122 77.673 1.00 55.67 ATOM 154 N ARG Q 17 -30.515 8.450 79.476 1.00 55.25 ATOM 155 CA ARG Q 17 -30.537 9.806 78.938 1.00 55.32 ATOM 156 C ARG Q 17 -29.874 10.744 79.915 1.00 55.33 ATOM 157 O ARG Q 17 -29.267 11.735 79.527 1.00 55.36 ATOM 158 CB ARG Q 17 -31.967 10.280 78.660 1.00 55.41 ATOM 159 CG ARG Q 17 -32.744 9.434 77.644 1.00 55.39 ATOM 160 CD ARG Q 17 -33.806 10.255 76.910 1.00 55.47 ATOM 161 NE ARG Q 17 -35.099 10.223 77.585 1.00 55.52 ATOM 162 CZ ARG Q 17 -36.211 9.704 77.065 1.00 55.57 ATOM 163 NH1 ARG Q 17 -36.219 9.151 75.851 1.00 55.56 ATOM 164 NH2 ARG Q 17 -37.331 9.729 77.774 1.00 55.61 ATOM 165 N ARG Q 18 -30.017 10.434 81.196 1.00 55.29 ATOM 166 CA ARG Q 18 -29.309 11.170 82.218 1.00 55.29 ATOM 167 C ARG Q 18 -27.826 11.061 81.924 1.00 55.23 ATOM 168 O ARG Q 18 -27.190 12.065 81.603 1.00 55.25 ATOM 169 CB ARG Q 18 -29.634 10.645 83.616 1.00 55.26 ATOM 170 CG ARG Q 18 -30.768 11.385 84.326 1.00 55.33 ATOM 171 CD ARG Q 18 -30.755 11.106 85.835 1.00 55.30 ATOM 172 NE ARG Q 18 -32.030 10.578 86.326 1.00 55.31 ATOM 173 CZ ARG Q 18 -32.146 9.679 87.303 1.00 55.26 ATOM 174 NH1 ARG Q 18 -31.060 9.195 87.898 1.00 55.20 ATOM 175 NH2 ARG Q 18 -33.349 9.260 87.683 1.00 55.27 ATOM 176 N LYS Q 19 -27.298 9.838 82.005 1.00 54.80 ATOM 177 CA LYS Q 19 -25.885 9.569 81.737 1.00 54.74 ATOM 178 C LYS Q 19 -25.387 10.295 80.497 1.00 54.77 ATOM 179 O LYS Q 19 -24.452 11.090 80.573 1.00 54.78 ATOM 180 CB LYS Q 19 -25.634 8.068 81.574 1.00 54.66 ATOM 181 CG LYS Q 19 -25.011 7.393 82.787 1.00 54.58 ATOM 182 CD LYS Q 19 -25.926 7.522 84.015 1.00 54.57 ATOM 183 CE LYS Q 19 -25.385 6.742 85.211 1.00 54.51 ATOM 184 NZ LYS Q 19 -24.958 5.360 84.834 1.00 54.42 ATOM 185 N VAL Q 20 -26.034 10.035 79.364 1.00 52.12 ATOM 186 CA VAL Q 20 -25.598 10.579 78.085 1.00 52.15 ATOM 187 C VAL Q 20 -25.476 12.101 78.102 1.00 52.23 ATOM 188 O VAL Q 20 -24.538 12.670 77.541 1.00 52.23 ATOM 189 CB VAL Q 20 -26.554 10.163 76.977 1.00 52.19 ATOM 190 CG1 VAL Q 20 -26.055 10.648 75.649 1.00 52.19 ATOM 191 CG2 VAL Q 20 -26.678 8.665 76.956 1.00 52.14 ATOM 192 N ARG Q 21 -26.413 12.765 78.765 1.00 51.65 ATOM 193 CA ARG Q 21 -26.357 14.219 78.834 1.00 51.72 ATOM 194 C ARG Q 21 -25.206 14.682 79.727 1.00 51.70 ATOM 195 O ARG Q 21 -24.717 15.802 79.580 1.00 51.73 ATOM 196 CB ARG Q 21 -27.690 14.799 79.320 1.00 51.79 ATOM 197 CG ARG Q 21 -28.646 15.140 78.182 1.00 51.87 ATOM 198 CD ARG Q 21 -29.748 16.088 78.618 1.00 51.94 ATOM 199 NE ARG Q 21 -29.244 17.438 78.804 1.00 52.01 ATOM 200 CZ ARG Q 21 -29.965 18.462 79.244 1.00 52.07 ATOM 201 NH1 ARG Q 21 -29.403 19.655 79.379 1.00 52.13 ATOM 202 NH2 ARG Q 21 -31.240 18.302 79.544 1.00 52.08 ATOM 203 N ALA Q 22 -24.758 13.818 80.632 1.00 53.24 ATOM 204 CA ALA Q 22 -23.652 14.171 81.516 1.00 53.22 ATOM 205 C ALA Q 22 -22.331 14.160 80.763 1.00 53.17 ATOM 206 O ALA Q 22 -21.379 14.837 81.153 1.00 53.17 ATOM 207 CB ALA Q 22 -23.589 13.226 82.696 1.00 53.16 ATOM 208 N ARG Q 23 -22.288 13.387 79.679 1.00 50.77 ATOM 209 CA ARG Q 23 -21.133 13.322 78.793 1.00 50.73 ATOM 210 C ARG Q 23 -20.789 14.689 78.220 1.00 50.79 ATOM 211 O ARG Q 23 -19.710 14.884 77.659 1.00 50.77 ATOM 212 CB ARG Q 23 -21.402 12.358 77.640 1.00 50.71 ATOM 213 CG ARG Q 23 -21.041 10.920 77.884 1.00 50.63 ATOM 214 CD ARG Q 23 -21.115 10.162 76.568 1.00 50.62 ATOM 215 NE ARG Q 23 -20.190 9.028 76.493 1.00 50.54 ATOM 216 CZ ARG Q 23 -18.978 9.075 75.941 1.00 50.50 ATOM 217 NH1 ARG Q 23 -18.220 7.992 75.916 1.00 50.43 ATOM 218 NH2 ARG Q 23 -18.518 10.202 75.415 1.00 50.55 ATOM 219 N SER Q 24 -21.728 15.623 78.353 1.00 52.54 ATOM 220 CA SER Q 24 -21.670 16.920 77.695 1.00 52.61 ATOM 221 C SER Q 24 -21.935 18.047 78.684 1.00 52.67 ATOM 222 O SER Q 24 -21.956 19.221 78.323 1.00 52.73 ATOM 223 CB SER Q 24 -22.689 16.960 76.555 1.00 52.66 ATOM 224 OG SER Q 24 -22.710 18.226 75.925 1.00 52.73 ATOM 225 N LYS Q 25 -22.143 17.666 79.937 1.00 55.04 ATOM 226 CA LYS Q 25 -22.463 18.598 81.008 1.00 55.10 ATOM 227 C LYS Q 25 -21.422 19.713 81.138 1.00 55.13 ATOM 228 O LYS Q 25 -20.228 19.455 81.339 1.00 55.10 ATOM 229 CB LYS Q 25 -22.584 17.837 82.328 1.00 55.07 ATOM 230 CG LYS Q 25 -23.174 18.646 83.477 1.00 55.06 ATOM 231 CD LYS Q 25 -22.671 18.131 84.829 1.00 55.02 ATOM 232 CE LYS Q 25 -22.785 16.610 84.921 1.00 54.95 ATOM 233 NZ LYS Q 25 -21.779 16.029 85.861 1.00 54.90 TER