HEADER Ribosome 28-AUG-15 5DGV TITLE Complex of yeast 80S ribosome with hypusine-containing/non-modified TITLE 2 eIF5A and/or a peptidyl-tRNA analog COMPND MOL_ID: 77; COMPND 2 MOLECULE: 60S ribosomal protein L41-A; COMPND 3 CHAIN: Q1, q1; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.10 ANGSTORMS DBREF 5DGV q 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 q1 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 q1 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET q 1 227.722 1.388 236.369 1.00 43.25 ATOM 2 CA MET q 1 227.409 0.691 235.124 1.00 43.27 ATOM 3 C MET q 1 228.206 1.230 233.925 1.00 43.19 ATOM 4 O MET q 1 228.711 2.358 233.960 1.00 43.21 ATOM 5 CB MET q 1 225.920 0.801 234.840 1.00 43.54 ATOM 6 CG MET q 1 225.418 2.229 234.930 1.00 43.76 ATOM 7 SD MET q 1 223.703 2.409 234.434 1.00 44.08 ATOM 8 CE MET q 1 223.705 1.571 232.862 1.00 44.04 ATOM 9 N ARG q 2 228.301 0.422 232.869 1.00 43.04 ATOM 10 CA ARG q 2 229.053 0.793 231.669 1.00 42.97 ATOM 11 C ARG q 2 228.619 2.158 231.155 1.00 43.19 ATOM 12 O ARG q 2 227.431 2.457 231.117 1.00 43.41 ATOM 13 CB ARG q 2 228.888 -0.261 230.576 1.00 42.89 ATOM 14 CG ARG q 2 228.807 0.305 229.175 1.00 42.92 ATOM 15 CD ARG q 2 229.722 -0.428 228.210 1.00 42.70 ATOM 16 NE ARG q 2 229.018 -1.339 227.314 1.00 42.69 ATOM 17 CZ ARG q 2 229.505 -1.738 226.144 1.00 42.65 ATOM 18 NH1 ARG q 2 230.679 -1.288 225.746 1.00 42.63 ATOM 19 NH2 ARG q 2 228.831 -2.576 225.369 1.00 42.64 ATOM 20 N ALA q 3 229.592 2.988 230.788 1.00 43.55 ATOM 21 CA ALA q 3 229.330 4.370 230.424 1.00 43.74 ATOM 22 C ALA q 3 228.310 4.441 229.314 1.00 43.92 ATOM 23 O ALA q 3 227.375 5.230 229.365 1.00 44.16 ATOM 24 CB ALA q 3 230.597 5.047 230.012 1.00 43.61 ATOM 25 N LYS q 4 228.483 3.587 228.320 1.00 42.48 ATOM 26 CA LYS q 4 227.565 3.523 227.190 1.00 42.63 ATOM 27 C LYS q 4 226.099 3.297 227.604 1.00 42.85 ATOM 28 O LYS q 4 225.184 3.919 227.064 1.00 43.06 ATOM 29 CB LYS q 4 228.024 2.419 226.230 1.00 42.46 ATOM 30 CG LYS q 4 226.950 1.874 225.328 1.00 42.61 ATOM 31 CD LYS q 4 227.534 1.008 224.242 1.00 42.44 ATOM 32 CE LYS q 4 227.584 1.765 222.944 1.00 42.36 ATOM 33 NZ LYS q 4 227.767 0.840 221.823 1.00 42.26 ATOM 34 N TRP q 5 225.876 2.413 228.566 1.00 43.60 ATOM 35 CA TRP q 5 224.520 2.083 228.946 1.00 43.78 ATOM 36 C TRP q 5 223.947 3.127 229.888 1.00 43.98 ATOM 37 O TRP q 5 222.726 3.282 229.957 1.00 44.20 ATOM 38 CB TRP q 5 224.452 0.695 229.586 1.00 43.64 ATOM 39 CG TRP q 5 225.056 -0.401 228.760 1.00 43.45 ATOM 40 CD1 TRP q 5 225.848 -1.418 229.211 1.00 43.24 ATOM 41 CD2 TRP q 5 224.927 -0.594 227.343 1.00 43.45 ATOM 42 NE1 TRP q 5 226.218 -2.232 228.165 1.00 43.10 ATOM 43 CE2 TRP q 5 225.663 -1.748 227.010 1.00 43.23 ATOM 44 CE3 TRP q 5 224.259 0.092 226.327 1.00 43.61 ATOM 45 CZ2 TRP q 5 225.754 -2.224 225.706 1.00 43.17 ATOM 46 CZ3 TRP q 5 224.352 -0.385 225.036 1.00 43.55 ATOM 47 CH2 TRP q 5 225.095 -1.530 224.736 1.00 43.33 ATOM 48 N ARG q 6 224.812 3.841 230.611 1.00 46.04 ATOM 49 CA ARG q 6 224.342 4.932 231.469 1.00 46.22 ATOM 50 C ARG q 6 223.848 6.069 230.594 1.00 46.42 ATOM 51 O ARG q 6 222.879 6.751 230.930 1.00 46.65 ATOM 52 CB ARG q 6 225.431 5.437 232.418 1.00 46.07 ATOM 53 CG ARG q 6 224.878 5.822 233.802 1.00 46.10 ATOM 54 CD ARG q 6 224.884 7.330 234.104 1.00 46.33 ATOM 55 NE ARG q 6 226.210 7.808 234.521 1.00 46.22 ATOM 56 CZ ARG q 6 226.456 9.008 235.058 1.00 46.36 ATOM 57 NH1 ARG q 6 225.464 9.882 235.274 1.00 46.60 ATOM 58 NH2 ARG q 6 227.706 9.332 235.386 1.00 46.24 ATOM 59 N LYS q 7 224.530 6.262 229.467 1.00 44.64 ATOM 60 CA LYS q 7 224.060 7.165 228.437 1.00 44.80 ATOM 61 C LYS q 7 222.633 6.780 228.070 1.00 44.99 ATOM 62 O LYS q 7 221.722 7.599 228.162 1.00 45.21 ATOM 63 CB LYS q 7 224.971 7.110 227.218 1.00 44.62 ATOM 64 CG LYS q 7 224.832 8.290 226.274 1.00 44.76 ATOM 65 CD LYS q 7 225.985 8.312 225.279 1.00 44.57 ATOM 66 CE LYS q 7 225.928 9.520 224.352 1.00 44.71 ATOM 67 NZ LYS q 7 226.797 9.370 223.134 1.00 44.55 ATOM 68 N LYS q 8 222.442 5.519 227.690 1.00 43.53 ATOM 69 CA LYS q 8 221.134 5.011 227.296 1.00 43.72 ATOM 70 C LYS q 8 220.119 5.294 228.380 1.00 43.92 ATOM 71 O LYS q 8 218.969 5.630 228.105 1.00 44.16 ATOM 72 CB LYS q 8 221.201 3.507 227.015 1.00 43.57 ATOM 73 CG LYS q 8 219.950 2.914 226.377 1.00 43.73 ATOM 74 CD LYS q 8 220.130 1.435 226.108 1.00 43.54 ATOM 75 CE LYS q 8 220.621 1.181 224.709 1.00 43.43 ATOM 76 NZ LYS q 8 219.511 1.229 223.730 1.00 43.62 ATOM 77 N ARG q 9 220.567 5.167 229.620 1.00 45.20 ATOM 78 CA ARG q 9 219.697 5.383 230.758 1.00 45.37 ATOM 79 C ARG q 9 219.204 6.823 230.767 1.00 45.58 ATOM 80 O ARG q 9 218.002 7.072 230.817 1.00 45.81 ATOM 81 CB ARG q 9 220.426 5.050 232.059 1.00 45.21 ATOM 82 CG ARG q 9 219.560 5.033 233.295 1.00 45.36 ATOM 83 CD ARG q 9 220.454 5.169 234.489 1.00 45.25 ATOM 84 NE ARG q 9 220.222 4.195 235.549 1.00 45.13 ATOM 85 CZ ARG q 9 220.360 2.878 235.422 1.00 45.02 ATOM 86 NH1 ARG q 9 220.687 2.337 234.250 1.00 45.02 ATOM 87 NH2 ARG q 9 220.150 2.092 236.470 1.00 44.92 ATOM 88 N THR q 10 220.133 7.769 230.690 1.00 45.91 ATOM 89 CA THR q 10 219.775 9.180 230.806 1.00 46.11 ATOM 90 C THR q 10 219.031 9.665 229.564 1.00 46.31 ATOM 91 O THR q 10 218.294 10.649 229.614 1.00 46.54 ATOM 92 CB THR q 10 221.008 10.056 231.036 1.00 46.00 ATOM 93 OG1 THR q 10 221.731 10.170 229.812 1.00 45.96 ATOM 94 CG2 THR q 10 221.906 9.451 232.107 1.00 45.75 ATOM 95 N ARG q 11 219.231 8.966 228.454 1.00 47.50 ATOM 96 CA ARG q 11 218.459 9.214 227.244 1.00 47.68 ATOM 97 C ARG q 11 216.986 8.906 227.480 1.00 47.88 ATOM 98 O ARG q 11 216.112 9.713 227.140 1.00 48.11 ATOM 99 CB ARG q 11 218.981 8.371 226.079 1.00 47.53 ATOM 100 CG ARG q 11 220.298 8.846 225.528 1.00 47.38 ATOM 101 CD ARG q 11 220.210 9.029 224.031 1.00 47.41 ATOM 102 NE ARG q 11 221.293 9.872 223.530 1.00 47.29 ATOM 103 CZ ARG q 11 222.425 9.408 223.009 1.00 47.05 ATOM 104 NH1 ARG q 11 222.616 8.091 222.912 1.00 46.90 ATOM 105 NH2 ARG q 11 223.353 10.260 222.574 1.00 46.97 ATOM 106 N ARG q 12 216.730 7.724 228.044 1.00 46.49 ATOM 107 CA ARG q 12 215.387 7.301 228.403 1.00 46.66 ATOM 108 C ARG q 12 214.772 8.305 229.355 1.00 46.86 ATOM 109 O ARG q 12 213.678 8.808 229.111 1.00 47.09 ATOM 110 CB ARG q 12 215.411 5.916 229.041 1.00 46.51 ATOM 111 CG ARG q 12 215.697 4.800 228.061 1.00 46.35 ATOM 112 CD ARG q 12 215.933 3.481 228.781 1.00 46.20 ATOM 113 NE ARG q 12 216.336 2.436 227.844 1.00 46.05 ATOM 114 CZ ARG q 12 216.743 1.224 228.204 1.00 45.84 ATOM 115 NH1 ARG q 12 216.804 0.909 229.490 1.00 45.77 ATOM 116 NH2 ARG q 12 217.094 0.333 227.283 1.00 45.72 ATOM 117 N LEU q 13 215.500 8.590 230.433 1.00 46.89 ATOM 118 CA LEU q 13 215.100 9.548 231.457 1.00 47.07 ATOM 119 C LEU q 13 214.650 10.874 230.855 1.00 47.29 ATOM 120 O LEU q 13 213.602 11.408 231.219 1.00 47.51 ATOM 121 CB LEU q 13 216.265 9.787 232.414 1.00 46.91 ATOM 122 CG LEU q 13 216.003 9.972 233.909 1.00 46.99 ATOM 123 CD1 LEU q 13 217.321 10.247 234.636 1.00 46.90 ATOM 124 CD2 LEU q 13 214.975 11.074 234.181 1.00 47.29 ATOM 125 N LYS q 14 215.455 11.403 229.933 1.00 47.53 ATOM 126 CA LYS q 14 215.145 12.663 229.268 1.00 47.72 ATOM 127 C LYS q 14 213.770 12.615 228.612 1.00 47.95 ATOM 128 O LYS q 14 212.907 13.431 228.930 1.00 48.18 ATOM 129 CB LYS q 14 216.227 13.010 228.241 1.00 47.58 ATOM 130 CG LYS q 14 217.045 14.228 228.663 1.00 47.45 ATOM 131 CD LYS q 14 218.472 14.224 228.119 1.00 47.35 ATOM 132 CE LYS q 14 218.523 14.684 226.666 1.00 47.57 ATOM 133 NZ LYS q 14 219.898 14.583 226.083 1.00 47.47 ATOM 134 N ARG q 15 213.568 11.646 227.721 1.00 48.54 ATOM 135 CA ARG q 15 212.314 11.508 226.989 1.00 48.74 ATOM 136 C ARG q 15 211.124 11.429 227.937 1.00 48.93 ATOM 137 O ARG q 15 210.061 11.996 227.666 1.00 49.17 ATOM 138 CB ARG q 15 212.344 10.268 226.088 1.00 48.62 ATOM 139 CG ARG q 15 213.251 10.390 224.884 1.00 48.47 ATOM 140 CD ARG q 15 212.878 9.398 223.791 1.00 48.46 ATOM 141 NE ARG q 15 213.104 8.014 224.202 1.00 48.32 ATOM 142 CZ ARG q 15 214.251 7.353 224.032 1.00 48.06 ATOM 143 NH1 ARG q 15 215.292 7.949 223.458 1.00 47.91 ATOM 144 NH2 ARG q 15 214.366 6.091 224.444 1.00 47.94 ATOM 145 N LYS q 16 211.318 10.728 229.052 1.00 47.90 ATOM 146 CA LYS q 16 210.271 10.525 230.039 1.00 48.05 ATOM 147 C LYS q 16 209.942 11.833 230.752 1.00 48.23 ATOM 148 O LYS q 16 208.779 12.195 230.889 1.00 48.46 ATOM 149 CB LYS q 16 210.696 9.467 231.045 1.00 47.88 ATOM 150 CG LYS q 16 209.542 8.783 231.729 1.00 47.90 ATOM 151 CD LYS q 16 209.995 8.034 232.985 1.00 47.78 ATOM 152 CE LYS q 16 210.263 8.979 234.161 1.00 47.86 ATOM 153 NZ LYS q 16 210.542 8.228 235.427 1.00 47.65 ATOM 154 N ARG q 17 210.971 12.542 231.201 1.00 47.38 ATOM 155 CA ARG q 17 210.789 13.875 231.761 1.00 47.54 ATOM 156 C ARG q 17 210.184 14.856 230.761 1.00 47.76 ATOM 157 O ARG q 17 209.434 15.750 231.146 1.00 47.98 ATOM 158 CB ARG q 17 212.118 14.434 232.270 1.00 47.38 ATOM 159 CG ARG q 17 212.507 13.933 233.649 1.00 47.28 ATOM 160 CD ARG q 17 213.261 14.991 234.422 1.00 47.25 ATOM 161 NE ARG q 17 214.662 15.057 234.028 1.00 46.98 ATOM 162 CZ ARG q 17 215.649 14.532 234.742 1.00 46.79 ATOM 163 NH1 ARG q 17 215.379 13.911 235.889 1.00 46.85 ATOM 164 NH2 ARG q 17 216.903 14.640 234.326 1.00 46.55 ATOM 165 N ARG q 18 210.526 14.708 229.484 1.00 49.02 ATOM 166 CA ARG q 18 209.963 15.564 228.454 1.00 49.22 ATOM 167 C ARG q 18 208.458 15.356 228.378 1.00 49.45 ATOM 168 O ARG q 18 207.694 16.311 228.233 1.00 49.68 ATOM 169 CB ARG q 18 210.609 15.282 227.105 1.00 49.10 ATOM 170 CG ARG q 18 211.662 16.297 226.700 1.00 49.00 ATOM 171 CD ARG q 18 211.468 16.774 225.243 1.00 48.97 ATOM 172 NE ARG q 18 210.277 17.615 225.071 1.00 49.23 ATOM 173 CZ ARG q 18 209.905 18.180 223.919 1.00 49.25 ATOM 174 NH1 ARG q 18 208.802 18.928 223.866 1.00 49.50 ATOM 175 NH2 ARG q 18 210.631 17.997 222.817 1.00 49.04 ATOM 176 N LYS q 19 208.051 14.092 228.486 1.00 47.38 ATOM 177 CA LYS q 19 206.643 13.693 228.533 1.00 47.57 ATOM 178 C LYS q 19 205.894 14.299 229.697 1.00 47.75 ATOM 179 O LYS q 19 204.826 14.887 229.535 1.00 48.00 ATOM 180 CB LYS q 19 206.530 12.182 228.636 1.00 47.43 ATOM 181 CG LYS q 19 206.082 11.510 227.368 1.00 47.48 ATOM 182 CD LYS q 19 207.092 11.648 226.267 1.00 47.26 ATOM 183 CE LYS q 19 206.562 10.956 225.034 1.00 47.31 ATOM 184 NZ LYS q 19 206.058 9.585 225.354 1.00 47.21 ATOM 185 N VAL q 20 206.467 14.109 230.878 1.00 46.64 ATOM 186 CA VAL q 20 205.899 14.600 232.123 1.00 46.81 ATOM 187 C VAL q 20 205.625 16.098 232.072 1.00 46.99 ATOM 188 O VAL q 20 204.573 16.550 232.512 1.00 47.23 ATOM 189 CB VAL q 20 206.825 14.298 233.311 1.00 46.66 ATOM 190 CG1 VAL q 20 206.239 14.875 234.576 1.00 46.86 ATOM 191 CG2 VAL q 20 207.028 12.804 233.459 1.00 46.42 ATOM 192 N ARG q 21 206.566 16.868 231.531 1.00 44.55 ATOM 193 CA ARG q 21 206.352 18.301 231.368 1.00 44.73 ATOM 194 C ARG q 21 205.166 18.568 230.432 1.00 44.96 ATOM 195 O ARG q 21 204.314 19.405 230.726 1.00 45.18 ATOM 196 CB ARG q 21 207.615 18.982 230.840 1.00 44.56 ATOM 197 CG ARG q 21 207.441 20.473 230.599 1.00 44.73 ATOM 198 CD ARG q 21 208.482 21.318 231.326 1.00 44.69 ATOM 199 NE ARG q 21 209.445 21.919 230.402 1.00 44.57 ATOM 200 CZ ARG q 21 209.892 23.168 230.484 1.00 44.64 ATOM 201 NH1 ARG q 21 209.473 23.965 231.446 1.00 44.84 ATOM 202 NH2 ARG q 21 210.758 23.624 229.602 1.00 44.51 ATOM 203 N ALA q 22 205.098 17.828 229.326 1.00 46.75 ATOM 204 CA ALA q 22 204.074 18.041 228.300 1.00 46.94 ATOM 205 C ALA q 22 202.670 17.776 228.821 1.00 47.18 ATOM 206 O ALA q 22 201.677 18.213 228.210 1.00 47.40 ATOM 207 CB ALA q 22 204.345 17.166 227.099 1.00 46.80 ATOM 208 N ARG q 23 202.598 17.056 229.946 1.00 45.55 ATOM 209 CA ARG q 23 201.336 16.663 230.572 1.00 45.75 ATOM 210 C ARG q 23 200.552 17.901 230.995 1.00 46.00 ATOM 211 O ARG q 23 199.355 17.839 231.240 1.00 46.22 ATOM 212 CB ARG q 23 201.610 15.743 231.769 1.00 45.62 ATOM 213 CG ARG q 23 200.420 14.927 232.260 1.00 45.67 ATOM 214 CD ARG q 23 200.796 13.451 232.493 1.00 45.40 ATOM 215 NE ARG q 23 201.661 13.205 233.657 1.00 45.33 ATOM 216 CZ ARG q 23 201.223 12.877 234.881 1.00 45.47 ATOM 217 NH1 ARG q 23 199.919 12.779 235.130 1.00 45.72 ATOM 218 NH2 ARG q 23 202.092 12.651 235.867 1.00 45.37 ATOM 219 N SER q 24 201.237 19.034 231.071 1.00 45.76 ATOM 220 CA SER q 24 200.603 20.292 231.420 1.00 45.97 ATOM 221 C SER q 24 200.700 21.241 230.250 1.00 46.05 ATOM 222 O SER q 24 200.864 22.450 230.445 1.00 46.23 ATOM 223 CB SER q 24 201.268 20.910 232.645 1.00 45.85 ATOM 224 OG SER q 24 202.631 21.198 232.388 1.00 45.58 ATOM 225 N LYS q 25 200.602 20.680 229.043 1.00 46.39 ATOM 226 CA LYS q 25 200.862 21.391 227.782 1.00 46.41 ATOM 227 C LYS q 25 202.293 21.914 227.788 1.00 46.25 ATOM 228 O LYS q 25 203.141 21.398 228.521 1.00 46.12 ATOM 229 CB LYS q 25 199.861 22.541 227.549 1.00 46.70 ATOM 230 CG LYS q 25 198.375 22.153 227.684 1.00 46.89 ATOM 231 CD LYS q 25 197.869 21.342 226.488 1.00 46.85 ATOM 232 CE LYS q 25 196.331 21.380 226.377 1.00 47.07 ATOM 233 NZ LYS q 25 195.803 20.884 225.056 1.00 47.14 TER