HEADER IMMUNE SYSTEM/SIGNALING PROTEIN 08-SEP-15 5DMJ TITLE Structure of the extracellular domain of the CD40 in complex with TITLE 2 3H56-5 DAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: Tumor necrosis factor receptor superfamily member 5; COMPND 3 CHAIN: A, D, F; COMPND 4 MUTATION: YES; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.79 ANGSTORMS DBREF 5DMJ A 23 193 UNP P25942 TNR5_HUMAN 23 193 SEQRES 1 A 26 PRO TRP THR SER CYS GLU THR LYS ASP LEU VAL VAL GLN SEQRES 2 A 26 GLN ALA GLY THR ASP LYS THR ASP VAL VAL CYS GLY PRO ATOM 1 N PRO A 163 28.800 -31.627 54.769 1.00 40.82 ATOM 2 CA PRO A 163 28.341 -32.800 55.542 1.00 40.19 ATOM 3 C PRO A 163 28.884 -34.114 54.994 1.00 44.51 ATOM 4 O PRO A 163 29.158 -34.215 53.797 1.00 43.70 ATOM 5 CB PRO A 163 26.820 -32.740 55.388 1.00 41.42 ATOM 6 CG PRO A 163 26.594 -32.029 54.100 1.00 45.25 ATOM 7 CD PRO A 163 27.691 -31.033 53.984 1.00 41.44 ATOM 8 N TRP A 164 29.027 -35.119 55.874 1.00 42.00 ATOM 9 CA TRP A 164 29.444 -36.459 55.497 1.00 42.54 ATOM 10 C TRP A 164 28.422 -37.095 54.524 1.00 52.84 ATOM 11 O TRP A 164 27.226 -36.782 54.611 1.00 52.95 ATOM 12 CB TRP A 164 29.623 -37.324 56.745 1.00 40.48 ATOM 13 CG TRP A 164 30.829 -36.997 57.576 1.00 41.40 ATOM 14 CD1 TRP A 164 31.971 -36.364 57.173 1.00 44.23 ATOM 15 CD2 TRP A 164 31.044 -37.378 58.935 1.00 41.56 ATOM 16 NE1 TRP A 164 32.873 -36.313 58.203 1.00 43.56 ATOM 17 CE2 TRP A 164 32.328 -36.922 59.302 1.00 45.38 ATOM 18 CE3 TRP A 164 30.277 -38.080 59.887 1.00 42.94 ATOM 19 CZ2 TRP A 164 32.835 -37.085 60.600 1.00 44.90 ATOM 20 CZ3 TRP A 164 30.794 -38.267 61.162 1.00 43.75 ATOM 21 CH2 TRP A 164 32.059 -37.777 61.505 1.00 44.34 ATOM 22 N THR A 165 28.909 -37.986 53.613 1.00 53.30 ATOM 23 CA THR A 165 28.175 -38.669 52.547 1.00 55.28 ATOM 24 C THR A 165 26.758 -39.111 52.982 1.00 67.25 ATOM 25 O THR A 165 25.806 -38.325 52.817 1.00 67.15 ATOM 26 CB THR A 165 29.003 -39.812 51.946 1.00 56.34 ATOM 27 N SER A 166 26.607 -40.346 53.517 1.00 68.89 ATOM 28 CA SER A 166 25.312 -40.917 53.926 1.00 71.15 ATOM 29 C SER A 166 25.483 -42.308 54.503 1.00 80.56 ATOM 30 O SER A 166 25.389 -42.481 55.722 1.00 81.49 ATOM 31 CB SER A 166 24.353 -40.997 52.741 1.00 75.10 ATOM 32 N CYS A 167 25.720 -43.307 53.612 1.00 79.86 ATOM 33 CA CYS A 167 25.884 -44.740 53.915 1.00 81.24 ATOM 34 C CYS A 167 24.689 -45.267 54.761 1.00 90.00 ATOM 35 O CYS A 167 24.828 -46.072 55.694 1.00 90.18 ATOM 36 CB CYS A 167 27.249 -45.037 54.543 1.00 81.07 ATOM 37 SG CYS A 167 28.608 -44.019 53.893 1.00 84.64 ATOM 38 N GLU A 168 23.504 -44.749 54.406 1.00 89.10 ATOM 39 CA GLU A 168 22.207 -45.006 55.010 1.00 90.12 ATOM 40 C GLU A 168 21.151 -44.690 53.957 1.00 96.95 ATOM 41 O GLU A 168 20.001 -45.102 54.121 1.00 96.90 ATOM 42 CB GLU A 168 22.005 -44.134 56.266 1.00 91.41 ATOM 43 N THR A 169 21.548 -43.971 52.866 1.00 95.13 ATOM 44 CA THR A 169 20.665 -43.608 51.750 1.00 95.84 ATOM 45 C THR A 169 20.308 -44.859 50.948 1.00101.93 ATOM 46 O THR A 169 19.213 -45.409 51.140 1.00102.41 ATOM 47 CB THR A 169 21.228 -42.455 50.875 1.00103.38 ATOM 48 OG1 THR A 169 22.598 -42.700 50.525 1.00102.38 ATOM 49 CG2 THR A 169 21.040 -41.079 51.510 1.00100.38 ATOM 50 N LYS A 170 21.249 -45.354 50.102 1.00 98.45 ATOM 51 CA LYS A 170 21.048 -46.573 49.307 1.00 97.85 ATOM 52 C LYS A 170 21.246 -47.806 50.212 1.00100.42 ATOM 53 O LYS A 170 21.485 -48.912 49.719 1.00100.36 ATOM 54 CB LYS A 170 22.008 -46.593 48.101 1.00100.13 ATOM 55 N ASP A 171 21.116 -47.594 51.550 1.00 95.13 ATOM 56 CA ASP A 171 21.312 -48.560 52.629 1.00 93.78 ATOM 57 C ASP A 171 22.731 -49.153 52.533 1.00 94.17 ATOM 58 O ASP A 171 22.928 -50.352 52.756 1.00 94.28 ATOM 59 CB ASP A 171 20.194 -49.625 52.653 1.00 95.72 ATOM 60 N LEU A 172 23.718 -48.286 52.175 1.00 86.90 ATOM 61 CA LEU A 172 25.136 -48.626 52.030 1.00 84.53 ATOM 62 C LEU A 172 25.792 -48.916 53.403 1.00 84.48 ATOM 63 O LEU A 172 25.159 -48.705 54.441 1.00 82.90 ATOM 64 CB LEU A 172 25.882 -47.541 51.240 1.00 84.29 ATOM 65 N VAL A 173 27.027 -49.460 53.394 1.00 79.65 ATOM 66 CA VAL A 173 27.773 -49.885 54.581 1.00 78.85 ATOM 67 C VAL A 173 28.197 -48.716 55.495 1.00 82.09 ATOM 68 O VAL A 173 27.367 -48.163 56.220 1.00 82.37 ATOM 69 CB VAL A 173 28.977 -50.781 54.186 1.00 82.50 ATOM 70 N VAL A 174 29.498 -48.403 55.507 1.00 76.91 ATOM 71 CA VAL A 174 30.156 -47.373 56.298 1.00 75.94 ATOM 72 C VAL A 174 31.623 -47.397 55.923 1.00 79.42 ATOM 73 O VAL A 174 32.152 -46.329 55.661 1.00 81.64 ATOM 74 CB VAL A 174 29.913 -47.433 57.836 1.00 79.61 ATOM 75 CG1 VAL A 174 30.432 -48.730 58.461 1.00 79.52 ATOM 76 CG2 VAL A 174 30.481 -46.205 58.545 1.00 79.20 ATOM 77 N GLN A 175 32.262 -48.601 55.866 1.00 72.22 ATOM 78 CA GLN A 175 33.656 -48.931 55.485 1.00 70.29 ATOM 79 C GLN A 175 34.786 -48.035 56.143 1.00 69.68 ATOM 80 O GLN A 175 35.664 -48.600 56.802 1.00 69.04 ATOM 81 CB GLN A 175 33.807 -48.988 53.957 1.00 71.49 ATOM 82 N GLN A 176 34.791 -46.690 55.940 1.00 62.92 ATOM 83 CA GLN A 176 35.749 -45.762 56.562 1.00 61.45 ATOM 84 C GLN A 176 35.038 -44.670 57.339 1.00 63.81 ATOM 85 O GLN A 176 34.184 -43.982 56.784 1.00 63.14 ATOM 86 CB GLN A 176 36.705 -45.158 55.552 1.00 62.33 ATOM 87 CG GLN A 176 37.908 -44.527 56.218 1.00 62.95 ATOM 88 CD GLN A 176 38.993 -44.262 55.223 1.00 69.99 ATOM 89 OE1 GLN A 176 39.326 -43.103 54.921 1.00 69.69 ATOM 90 NE2 GLN A 176 39.565 -45.336 54.692 1.00 47.26 ATOM 91 N ALA A 177 35.432 -44.511 58.615 1.00 60.08 ATOM 92 CA ALA A 177 34.894 -43.645 59.674 1.00 60.01 ATOM 93 C ALA A 177 34.361 -42.257 59.255 1.00 62.09 ATOM 94 O ALA A 177 33.162 -42.009 59.409 1.00 62.55 ATOM 95 CB ALA A 177 35.924 -43.477 60.784 1.00 60.93 ATOM 96 N GLY A 178 35.236 -41.370 58.788 1.00 55.06 ATOM 97 CA GLY A 178 34.849 -40.001 58.466 1.00 53.51 ATOM 98 C GLY A 178 35.400 -39.071 59.532 1.00 53.69 ATOM 99 O GLY A 178 35.106 -39.233 60.721 1.00 52.28 ATOM 100 N THR A 179 36.307 -38.178 59.110 1.00 47.75 ATOM 101 CA THR A 179 37.084 -37.236 59.921 1.00 46.26 ATOM 102 C THR A 179 36.476 -35.854 59.741 1.00 47.00 ATOM 103 O THR A 179 35.436 -35.710 59.106 1.00 46.20 ATOM 104 CB THR A 179 38.540 -37.207 59.347 1.00 54.22 ATOM 105 OG1 THR A 179 38.901 -38.492 58.853 1.00 58.36 ATOM 106 CG2 THR A 179 39.584 -36.740 60.337 1.00 50.73 ATOM 107 N ASP A 180 37.150 -34.834 60.280 1.00 41.29 ATOM 108 CA ASP A 180 36.834 -33.424 60.111 1.00 39.32 ATOM 109 C ASP A 180 37.584 -32.956 58.838 1.00 40.01 ATOM 110 O ASP A 180 37.404 -31.828 58.373 1.00 38.87 ATOM 111 CB ASP A 180 37.305 -32.633 61.355 1.00 40.61 ATOM 112 CG ASP A 180 38.800 -32.701 61.719 1.00 46.49 ATOM 113 OD1 ASP A 180 39.455 -33.717 61.390 1.00 45.91 ATOM 114 OD2 ASP A 180 39.298 -31.753 62.382 1.00 48.20 ATOM 115 N LYS A 181 38.424 -33.849 58.290 1.00 35.43 ATOM 116 CA LYS A 181 39.278 -33.619 57.128 1.00 34.90 ATOM 117 C LYS A 181 38.903 -34.543 55.980 1.00 41.56 ATOM 118 O LYS A 181 39.171 -34.217 54.823 1.00 42.89 ATOM 119 CB LYS A 181 40.760 -33.831 57.514 1.00 35.40 ATOM 120 CG LYS A 181 41.330 -32.786 58.470 1.00 33.01 ATOM 121 CD LYS A 181 42.716 -33.153 58.928 1.00 40.00 ATOM 122 CE LYS A 181 43.245 -32.130 59.904 1.00 52.58 ATOM 123 N THR A 182 38.312 -35.700 56.295 1.00 38.30 ATOM 124 CA THR A 182 37.940 -36.717 55.318 1.00 37.98 ATOM 125 C THR A 182 36.445 -37.041 55.388 1.00 44.08 ATOM 126 O THR A 182 35.805 -36.773 56.403 1.00 43.77 ATOM 127 CB THR A 182 38.812 -37.966 55.541 1.00 38.90 ATOM 128 N ASP A 183 35.884 -37.614 54.314 1.00 42.86 ATOM 129 CA ASP A 183 34.473 -38.010 54.300 1.00 43.69 ATOM 130 C ASP A 183 34.373 -39.513 54.497 1.00 52.52 ATOM 131 O ASP A 183 35.353 -40.240 54.338 1.00 52.66 ATOM 132 CB ASP A 183 33.788 -37.587 52.977 1.00 44.94 ATOM 133 CG ASP A 183 32.300 -37.907 52.797 1.00 45.12 ATOM 134 OD1 ASP A 183 31.604 -38.131 53.815 1.00 40.42 ATOM 135 OD2 ASP A 183 31.847 -37.976 51.635 1.00 51.13 ATOM 136 N VAL A 184 33.182 -39.962 54.871 1.00 53.36 ATOM 137 CA VAL A 184 32.808 -41.350 55.035 1.00 55.41 ATOM 138 C VAL A 184 32.919 -42.013 53.652 1.00 66.16 ATOM 139 O VAL A 184 32.572 -41.413 52.617 1.00 66.96 ATOM 140 CB VAL A 184 31.383 -41.462 55.641 1.00 58.73 ATOM 141 CG1 VAL A 184 31.026 -42.909 55.917 1.00 58.63 ATOM 142 CG2 VAL A 184 31.271 -40.652 56.932 1.00 58.42 ATOM 143 N VAL A 185 33.489 -43.215 53.640 1.00 65.90 ATOM 144 CA VAL A 185 33.682 -44.005 52.427 1.00 67.25 ATOM 145 C VAL A 185 32.798 -45.218 52.664 1.00 74.67 ATOM 146 O VAL A 185 32.941 -45.802 53.722 1.00 72.62 ATOM 147 CB VAL A 185 35.193 -44.389 52.302 1.00 71.24 ATOM 148 CG1 VAL A 185 35.457 -45.283 51.098 1.00 71.01 ATOM 149 CG2 VAL A 185 36.091 -43.148 52.263 1.00 71.04 ATOM 150 N CYS A 186 31.875 -45.590 51.738 1.00 76.51 ATOM 151 CA CYS A 186 31.018 -46.773 51.994 1.00 78.69 ATOM 152 C CYS A 186 30.918 -47.777 50.839 1.00 84.11 ATOM 153 O CYS A 186 30.861 -47.395 49.665 1.00 83.81 ATOM 154 CB CYS A 186 29.624 -46.385 52.481 1.00 79.91 ATOM 155 SG CYS A 186 29.097 -44.705 52.040 1.00 84.37 ATOM 156 N GLY A 187 30.843 -49.054 51.221 1.00 81.68 ATOM 157 CA GLY A 187 30.642 -50.187 50.326 1.00 81.88 ATOM 158 C GLY A 187 29.238 -50.746 50.499 1.00 86.63 ATOM 159 O GLY A 187 28.355 -50.025 50.971 1.00 85.52 ATOM 160 N PRO A 188 28.974 -52.034 50.172 1.00 84.97 ATOM 161 CA PRO A 188 27.607 -52.565 50.334 1.00 89.66 ATOM 162 C PRO A 188 27.378 -53.289 51.668 1.00130.84 ATOM 163 O PRO A 188 26.248 -53.640 52.013 1.00 94.21 ATOM 164 CB PRO A 188 27.461 -53.501 49.134 1.00 90.65 ATOM 165 CG PRO A 188 28.894 -53.922 48.796 1.00 93.75 ATOM 166 CD PRO A 188 29.861 -53.053 49.578 1.00 88.15 TER