HEADER IMMUNE SYSTEM/SIGNALING PROTEIN 08-SEP-15 5DMJ TITLE Structure of the extracellular domain of the CD40 in complex with TITLE 2 3H56-5 DAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: Tumor necrosis factor receptor superfamily member 5; COMPND 3 CHAIN: A, D, F; COMPND 4 MUTATION: YES; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.79 ANGSTORMS DBREF 5DMJ F 23 193 UNP P25942 TNR5_HUMAN 23 193 SEQRES 1 F 26 PRO TRP THR SER CYS GLU THR LYS ASP LEU VAL VAL GLN SEQRES 2 F 26 GLN ALA GLY THR ASP LYS THR ASP VAL VAL CYS GLY PRO ATOM 1 N PRO F 163 5.579 -24.953 36.659 1.00 71.68 ATOM 2 CA PRO F 163 5.854 -26.405 36.735 1.00 71.74 ATOM 3 C PRO F 163 7.131 -26.704 37.509 1.00 78.10 ATOM 4 O PRO F 163 8.031 -25.862 37.556 1.00 78.56 ATOM 5 CB PRO F 163 5.996 -26.819 35.274 1.00 72.99 ATOM 6 CG PRO F 163 6.443 -25.586 34.579 1.00 77.26 ATOM 7 CD PRO F 163 5.803 -24.432 35.292 1.00 72.69 ATOM 8 N TRP F 164 7.214 -27.888 38.117 1.00 75.99 ATOM 9 CA TRP F 164 8.406 -28.300 38.861 1.00 76.92 ATOM 10 C TRP F 164 9.621 -28.327 37.915 1.00 83.95 ATOM 11 O TRP F 164 9.474 -28.686 36.739 1.00 83.58 ATOM 12 CB TRP F 164 8.177 -29.662 39.538 1.00 75.67 ATOM 13 CG TRP F 164 7.203 -29.646 40.682 1.00 76.59 ATOM 14 CD1 TRP F 164 6.933 -28.601 41.516 1.00 79.48 ATOM 15 CD2 TRP F 164 6.447 -30.762 41.179 1.00 76.34 ATOM 16 NE1 TRP F 164 6.047 -28.992 42.495 1.00 78.73 ATOM 17 CE2 TRP F 164 5.734 -30.314 42.312 1.00 80.07 ATOM 18 CE3 TRP F 164 6.322 -32.109 40.792 1.00 77.28 ATOM 19 CZ2 TRP F 164 4.870 -31.147 43.027 1.00 79.19 ATOM 20 CZ3 TRP F 164 5.470 -32.934 41.508 1.00 78.37 ATOM 21 CH2 TRP F 164 4.773 -32.459 42.622 1.00 78.98 ATOM 22 N THR F 165 10.764 -27.804 38.380 1.00 82.67 ATOM 23 CA THR F 165 11.978 -27.725 37.569 1.00 83.36 ATOM 24 C THR F 165 12.565 -29.117 37.334 1.00 90.42 ATOM 25 O THR F 165 12.730 -29.884 38.288 1.00 89.96 ATOM 26 CB THR F 165 12.982 -26.740 38.189 1.00 86.37 ATOM 27 N SER F 166 12.831 -29.461 36.060 1.00 89.21 ATOM 28 CA SER F 166 13.435 -30.746 35.720 1.00 90.20 ATOM 29 C SER F 166 14.927 -30.605 35.968 1.00 98.10 ATOM 30 O SER F 166 15.560 -29.692 35.425 1.00 97.73 ATOM 31 CB SER F 166 13.152 -31.131 34.272 1.00 93.08 ATOM 32 OG SER F 166 13.701 -32.405 33.970 1.00 99.84 ATOM 33 N CYS F 167 15.474 -31.478 36.829 1.00 97.83 ATOM 34 CA CYS F 167 16.877 -31.452 37.239 1.00 99.30 ATOM 35 C CYS F 167 17.848 -32.148 36.265 1.00103.88 ATOM 36 O CYS F 167 19.034 -31.808 36.271 1.00103.15 ATOM 37 CB CYS F 167 17.025 -31.972 38.661 1.00100.55 ATOM 38 SG CYS F 167 16.367 -30.835 39.906 1.00105.04 ATOM 39 N GLU F 168 17.347 -33.055 35.391 1.00101.05 ATOM 40 CA GLU F 168 18.154 -33.678 34.332 1.00100.73 ATOM 41 C GLU F 168 18.428 -32.581 33.292 1.00104.27 ATOM 42 O GLU F 168 19.457 -32.603 32.618 1.00104.09 ATOM 43 CB GLU F 168 17.395 -34.841 33.676 1.00102.11 ATOM 44 N THR F 169 17.502 -31.594 33.221 1.00100.52 ATOM 45 CA THR F 169 17.503 -30.400 32.369 1.00100.15 ATOM 46 C THR F 169 18.199 -29.241 33.130 1.00102.99 ATOM 47 O THR F 169 17.829 -28.075 32.977 1.00101.90 ATOM 48 CB THR F 169 16.044 -30.081 31.929 1.00109.47 ATOM 49 OG1 THR F 169 15.338 -31.304 31.684 1.00109.89 ATOM 50 CG2 THR F 169 15.968 -29.177 30.687 1.00107.34 ATOM 51 N LYS F 170 19.213 -29.586 33.955 1.00 99.74 ATOM 52 CA LYS F 170 20.026 -28.672 34.765 1.00 99.77 ATOM 53 C LYS F 170 21.307 -29.373 35.287 1.00105.61 ATOM 54 O LYS F 170 22.066 -28.767 36.054 1.00105.44 ATOM 55 CB LYS F 170 19.202 -28.090 35.931 1.00101.70 ATOM 56 N ASP F 171 21.550 -30.641 34.845 1.00102.98 ATOM 57 CA ASP F 171 22.688 -31.508 35.220 1.00103.04 ATOM 58 C ASP F 171 22.711 -31.801 36.741 1.00106.47 ATOM 59 O ASP F 171 23.671 -31.466 37.444 1.00105.64 ATOM 60 CB ASP F 171 24.041 -30.976 34.689 1.00104.91 ATOM 61 N LEU F 172 21.613 -32.423 37.229 1.00103.09 ATOM 62 CA LEU F 172 21.381 -32.813 38.626 1.00102.67 ATOM 63 C LEU F 172 20.518 -34.094 38.732 1.00105.18 ATOM 64 O LEU F 172 19.863 -34.486 37.756 1.00104.64 ATOM 65 CB LEU F 172 20.744 -31.654 39.412 1.00102.73 ATOM 66 N VAL F 173 20.532 -34.744 39.913 1.00100.57 ATOM 67 CA VAL F 173 19.792 -35.981 40.165 1.00 99.97 ATOM 68 C VAL F 173 18.283 -35.744 40.430 1.00103.58 ATOM 69 O VAL F 173 17.478 -35.861 39.501 1.00102.77 ATOM 70 CB VAL F 173 20.464 -36.797 41.291 1.00103.68 ATOM 71 N VAL F 174 17.938 -35.450 41.721 1.00 99.80 ATOM 72 CA VAL F 174 16.668 -35.155 42.437 1.00 98.83 ATOM 73 C VAL F 174 16.896 -35.442 43.934 1.00101.31 ATOM 74 O VAL F 174 17.255 -36.573 44.283 1.00101.10 ATOM 75 CB VAL F 174 15.294 -35.724 41.924 1.00101.99 ATOM 76 CG1 VAL F 174 14.748 -34.939 40.734 1.00101.46 ATOM 77 CG2 VAL F 174 15.329 -37.226 41.647 1.00101.73 ATOM 78 N GLN F 175 16.746 -34.419 44.806 1.00 96.00 ATOM 79 CA GLN F 175 16.960 -34.590 46.247 1.00 94.80 ATOM 80 C GLN F 175 15.678 -34.476 47.062 1.00 96.51 ATOM 81 O GLN F 175 15.435 -35.322 47.920 1.00 96.12 ATOM 82 CB GLN F 175 18.048 -33.642 46.780 1.00 96.07 ATOM 83 N GLN F 176 14.871 -33.433 46.809 1.00 91.61 ATOM 84 CA GLN F 176 13.619 -33.206 47.528 1.00 90.68 ATOM 85 C GLN F 176 12.413 -33.612 46.699 1.00 92.12 ATOM 86 O GLN F 176 12.551 -33.904 45.518 1.00 91.48 ATOM 87 CB GLN F 176 13.509 -31.752 47.995 1.00 92.30 ATOM 88 N ALA F 177 11.237 -33.659 47.326 1.00 87.64 ATOM 89 CA ALA F 177 9.992 -34.089 46.692 1.00 86.80 ATOM 90 C ALA F 177 9.353 -33.076 45.728 1.00 88.12 ATOM 91 O ALA F 177 9.219 -33.354 44.534 1.00 88.16 ATOM 92 CB ALA F 177 8.986 -34.512 47.757 1.00 87.64 ATOM 93 N GLY F 178 8.929 -31.940 46.255 1.00 82.24 ATOM 94 CA GLY F 178 8.223 -30.933 45.477 1.00 80.89 ATOM 95 C GLY F 178 6.756 -30.948 45.832 1.00 81.99 ATOM 96 O GLY F 178 6.126 -32.010 45.781 1.00 80.96 ATOM 97 N THR F 179 6.207 -29.774 46.208 1.00 76.94 ATOM 98 CA THR F 179 4.803 -29.624 46.621 1.00 75.99 ATOM 99 C THR F 179 4.067 -28.504 45.866 1.00 78.85 ATOM 100 O THR F 179 4.529 -28.043 44.818 1.00 78.89 ATOM 101 CB THR F 179 4.706 -29.407 48.142 1.00 81.12 ATOM 102 OG1 THR F 179 5.516 -28.290 48.505 1.00 82.74 ATOM 103 CG2 THR F 179 5.082 -30.637 48.954 1.00 77.21 ATOM 104 N ASP F 180 2.916 -28.067 46.424 1.00 73.77 ATOM 105 CA ASP F 180 2.074 -27.002 45.894 1.00 73.12 ATOM 106 C ASP F 180 2.711 -25.641 46.197 1.00 77.21 ATOM 107 O ASP F 180 2.370 -24.645 45.555 1.00 75.88 ATOM 108 CB ASP F 180 0.669 -27.091 46.517 1.00 74.59 ATOM 109 N LYS F 181 3.650 -25.612 47.162 1.00 75.22 ATOM 110 CA LYS F 181 4.330 -24.397 47.607 1.00 75.99 ATOM 111 C LYS F 181 5.879 -24.437 47.510 1.00 81.22 ATOM 112 O LYS F 181 6.514 -23.416 47.763 1.00 80.40 ATOM 113 CB LYS F 181 3.871 -24.043 49.038 1.00 78.54 ATOM 114 N THR F 182 6.484 -25.603 47.183 1.00 78.83 ATOM 115 CA THR F 182 7.947 -25.753 47.046 1.00 78.60 ATOM 116 C THR F 182 8.309 -26.442 45.726 1.00 84.03 ATOM 117 O THR F 182 7.503 -27.213 45.202 1.00 83.77 ATOM 118 CB THR F 182 8.582 -26.495 48.241 1.00 80.74 ATOM 119 OG1 THR F 182 8.193 -27.862 48.237 1.00 81.32 ATOM 120 CG2 THR F 182 8.307 -25.844 49.585 1.00 76.54 ATOM 121 N ASP F 183 9.543 -26.211 45.225 1.00 81.95 ATOM 122 CA ASP F 183 10.044 -26.777 43.965 1.00 82.76 ATOM 123 C ASP F 183 10.616 -28.221 44.091 1.00 90.88 ATOM 124 O ASP F 183 9.867 -29.174 43.897 1.00 91.44 ATOM 125 CB ASP F 183 11.065 -25.829 43.297 1.00 83.67 ATOM 126 CG ASP F 183 11.175 -25.962 41.788 1.00 84.80 ATOM 127 OD1 ASP F 183 11.134 -27.105 41.286 1.00 84.04 ATOM 128 OD2 ASP F 183 11.331 -24.924 41.112 1.00 87.55 ATOM 129 N VAL F 184 11.948 -28.362 44.306 1.00 89.18 ATOM 130 CA VAL F 184 12.762 -29.594 44.440 1.00 89.66 ATOM 131 C VAL F 184 14.229 -29.132 44.611 1.00 96.27 ATOM 132 O VAL F 184 14.673 -28.252 43.864 1.00 96.20 ATOM 133 CB VAL F 184 12.548 -30.671 43.313 1.00 93.38 ATOM 134 CG1 VAL F 184 12.623 -30.081 41.909 1.00 93.31 ATOM 135 CG2 VAL F 184 13.500 -31.852 43.452 1.00 93.13 ATOM 136 N VAL F 185 14.952 -29.663 45.623 1.00 94.79 ATOM 137 CA VAL F 185 16.328 -29.233 45.932 1.00 95.85 ATOM 138 C VAL F 185 17.349 -29.647 44.830 1.00103.07 ATOM 139 O VAL F 185 17.919 -28.759 44.177 1.00102.74 ATOM 140 CB VAL F 185 16.795 -29.648 47.362 1.00 99.49 ATOM 141 CG1 VAL F 185 18.241 -29.221 47.618 1.00 99.34 ATOM 142 CG2 VAL F 185 15.882 -29.060 48.434 1.00 99.21 ATOM 143 N CYS F 186 17.594 -30.981 44.666 1.00101.31 ATOM 144 CA CYS F 186 18.522 -31.625 43.713 1.00101.65 ATOM 145 C CYS F 186 20.013 -31.451 44.057 1.00107.20 ATOM 146 O CYS F 186 20.410 -30.446 44.652 1.00106.73 ATOM 147 CB CYS F 186 18.231 -31.207 42.276 1.00101.66 ATOM 148 SG CYS F 186 16.636 -31.796 41.668 1.00105.28 ATOM 149 N GLY F 187 20.810 -32.449 43.659 1.00104.87 ATOM 150 CA GLY F 187 22.252 -32.486 43.875 1.00105.10 ATOM 151 C GLY F 187 23.010 -33.326 42.860 1.00109.66 ATOM 152 O GLY F 187 22.745 -33.213 41.660 1.00108.71 ATOM 153 N PRO F 188 23.981 -34.174 43.302 1.00107.19 ATOM 154 CA PRO F 188 24.733 -34.994 42.336 1.00110.57 ATOM 155 C PRO F 188 24.029 -36.304 42.006 1.00119.36 ATOM 156 O PRO F 188 24.436 -37.011 41.090 1.00 73.66 ATOM 157 CB PRO F 188 26.073 -35.230 43.040 1.00111.90 ATOM 158 CG PRO F 188 25.786 -35.063 44.512 1.00115.26 ATOM 159 CD PRO F 188 24.428 -34.438 44.688 1.00109.97 TER