HEADER TRANSFERASE 26-NOV-15 5EZK TITLE RNA polymerase model placed by Molecular replacement into X-ray TITLE 2 diffraction map of DNA-bound RNA Polymerase-Sigma 54 holoenzyme COMPND MOL_ID: 2; COMPND 2 MOLECULE: DNA-directed RNA polymerase subunit beta; COMPND 3 CHAIN: C; COMPND 4 EC: 2.7.7.6; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 8.50 ANGSTORMS DBREF 5EZK C 1 1342 UNP P0A8V4 RPOB_ECO57 1 1342 SEQRES 1 C 54 ASN LYS LEU GLN MET GLU LEU VAL PRO GLU ARG LEU ARG SEQRES 2 C 54 GLY GLU THR ALA SER PHE ASP ILE GLU ALA ASN GLY LYS SEQRES 3 C 54 VAL TYR VAL GLU LYS GLY ARG ARG ILE THR ALA ARG HIS SEQRES 4 C 54 ILE ARG GLN LEU GLU LYS ASP ASP VAL LYS LEU ILE GLU SEQRES 5 C 54 VAL PRO ATOM 1 N ASN C 235 -105.555 6.425 46.900 1.00125.74 ATOM 2 CA ASN C 235 -105.477 4.976 46.670 1.00133.45 ATOM 3 C ASN C 235 -106.289 4.506 45.454 1.00144.40 ATOM 4 O ASN C 235 -107.085 3.566 45.547 1.00114.94 ATOM 5 CB ASN C 235 -105.896 4.210 47.932 1.00119.17 ATOM 6 N LYS C 236 -106.076 5.173 44.321 1.00163.75 ATOM 7 CA LYS C 236 -106.785 4.858 43.076 1.00166.38 ATOM 8 C LYS C 236 -106.086 5.455 41.854 1.00151.07 ATOM 9 O LYS C 236 -105.192 6.295 41.988 1.00115.74 ATOM 10 CB LYS C 236 -108.226 5.368 43.145 1.00167.18 ATOM 11 N LEU C 237 -106.513 5.014 40.670 1.00155.03 ATOM 12 CA LEU C 237 -105.917 5.430 39.397 1.00122.07 ATOM 13 C LEU C 237 -106.863 6.336 38.609 1.00113.42 ATOM 14 O LEU C 237 -107.926 5.894 38.166 1.00100.50 ATOM 15 CB LEU C 237 -105.568 4.200 38.558 1.00100.25 ATOM 16 N GLN C 238 -106.467 7.600 38.446 1.00135.22 ATOM 17 CA GLN C 238 -107.208 8.576 37.638 1.00170.17 ATOM 18 C GLN C 238 -106.584 8.705 36.248 1.00171.82 ATOM 19 O GLN C 238 -105.562 8.077 35.957 1.00150.59 ATOM 20 CB GLN C 238 -107.213 9.938 38.334 1.00151.46 ATOM 21 N MET C 239 -107.207 9.517 35.394 1.00138.23 ATOM 22 CA MET C 239 -106.710 9.749 34.034 1.00109.96 ATOM 23 C MET C 239 -107.290 11.024 33.424 1.00108.00 ATOM 24 O MET C 239 -108.476 11.317 33.594 1.00105.51 ATOM 25 CB MET C 239 -107.052 8.555 33.140 1.00148.19 ATOM 26 N GLU C 240 -106.444 11.773 32.714 1.00140.05 ATOM 27 CA GLU C 240 -106.866 12.986 32.011 1.00153.89 ATOM 28 C GLU C 240 -107.622 12.601 30.739 1.00135.67 ATOM 29 O GLU C 240 -107.017 12.397 29.682 1.00129.24 ATOM 30 CB GLU C 240 -105.656 13.862 31.670 1.00168.22 ATOM 31 N LEU C 241 -108.945 12.498 30.858 1.00118.70 ATOM 32 CA LEU C 241 -109.798 12.028 29.765 1.00151.42 ATOM 33 C LEU C 241 -109.992 13.100 28.693 1.00170.61 ATOM 34 O LEU C 241 -110.234 14.266 29.011 1.00157.60 ATOM 35 CB LEU C 241 -111.162 11.591 30.304 1.00161.64 ATOM 36 N VAL C 242 -109.877 12.687 27.429 1.00184.66 ATOM 37 CA VAL C 242 -110.136 13.544 26.273 1.00176.16 ATOM 38 C VAL C 242 -111.161 12.856 25.375 1.00183.26 ATOM 39 O VAL C 242 -110.884 11.795 24.813 1.00169.95 ATOM 40 CB VAL C 242 -108.852 13.804 25.466 1.00125.58 ATOM 41 N PRO C 243 -112.356 13.459 25.250 1.00172.19 ATOM 42 CA PRO C 243 -113.538 13.022 24.504 1.00160.69 ATOM 43 C PRO C 243 -113.275 12.749 23.021 1.00167.62 ATOM 44 O PRO C 243 -113.758 11.747 22.488 1.00183.47 ATOM 45 CB PRO C 243 -114.501 14.200 24.662 1.00134.39 ATOM 46 N GLU C 244 -112.526 13.639 22.371 1.00155.04 ATOM 47 CA GLU C 244 -112.156 13.480 20.958 1.00162.25 ATOM 48 C GLU C 244 -111.203 12.304 20.709 1.00168.04 ATOM 49 O GLU C 244 -111.222 11.712 19.628 1.00179.51 ATOM 50 CB GLU C 244 -111.525 14.770 20.425 1.00125.74 ATOM 51 N ARG C 245 -110.378 11.975 21.705 1.00168.48 ATOM 52 CA ARG C 245 -109.440 10.849 21.616 1.00182.53 ATOM 53 C ARG C 245 -110.106 9.464 21.627 1.00168.03 ATOM 54 O ARG C 245 -109.494 8.491 21.181 1.00155.61 ATOM 55 CB ARG C 245 -108.414 10.924 22.751 1.00177.00 ATOM 56 N LEU C 246 -111.344 9.376 22.123 1.00173.58 ATOM 57 CA LEU C 246 -112.080 8.105 22.205 1.00184.27 ATOM 58 C LEU C 246 -112.948 7.779 20.973 1.00158.45 ATOM 59 O LEU C 246 -113.909 7.011 21.084 1.00145.74 ATOM 60 CB LEU C 246 -112.959 8.101 23.462 1.00186.44 ATOM 61 N ARG C 247 -112.608 8.340 19.809 1.00145.95 ATOM 62 CA ARG C 247 -113.337 8.072 18.567 1.00140.97 ATOM 63 C ARG C 247 -112.852 6.765 17.942 1.00137.46 ATOM 64 O ARG C 247 -111.685 6.655 17.559 1.00132.92 ATOM 65 CB ARG C 247 -113.145 9.221 17.574 1.00142.18 ATOM 66 N GLY C 248 -113.749 5.784 17.845 1.00137.68 ATOM 67 CA GLY C 248 -113.423 4.477 17.275 1.00128.39 ATOM 68 C GLY C 248 -112.598 3.629 18.223 1.00132.87 ATOM 69 O GLY C 248 -111.477 3.232 17.895 1.00121.51 ATOM 70 N GLU C 249 -113.158 3.359 19.401 1.00154.82 ATOM 71 CA GLU C 249 -112.488 2.557 20.428 1.00181.79 ATOM 72 C GLU C 249 -113.487 1.947 21.412 1.00184.67 ATOM 73 O GLU C 249 -114.487 2.578 21.762 1.00154.55 ATOM 74 CB GLU C 249 -111.474 3.413 21.188 1.00167.81 ATOM 75 N THR C 250 -113.198 0.723 21.855 1.00206.59 ATOM 76 CA THR C 250 -114.057 -0.005 22.791 1.00167.71 ATOM 77 C THR C 250 -113.713 0.357 24.234 1.00155.25 ATOM 78 O THR C 250 -112.538 0.374 24.609 1.00162.23 ATOM 79 CB THR C 250 -113.906 -1.528 22.620 1.00111.92 ATOM 80 N ALA C 251 -114.740 0.638 25.035 1.00129.81 ATOM 81 CA ALA C 251 -114.562 0.984 26.448 1.00123.30 ATOM 82 C ALA C 251 -114.328 -0.279 27.279 1.00163.02 ATOM 83 O ALA C 251 -115.214 -1.131 27.379 1.00190.91 ATOM 84 CB ALA C 251 -115.774 1.742 26.968 1.00108.49 ATOM 85 N SER C 252 -113.136 -0.389 27.865 1.00162.24 ATOM 86 CA SER C 252 -112.769 -1.527 28.718 1.00135.24 ATOM 87 C SER C 252 -113.198 -1.368 30.184 1.00126.60 ATOM 88 O SER C 252 -113.140 -2.336 30.946 1.00 98.90 ATOM 89 CB SER C 252 -111.257 -1.761 28.656 1.00113.19 ATOM 90 N PHE C 253 -113.614 -0.160 30.574 1.00147.45 ATOM 91 CA PHE C 253 -114.052 0.124 31.947 1.00145.53 ATOM 92 C PHE C 253 -115.175 1.161 31.983 1.00144.37 ATOM 93 O PHE C 253 -115.523 1.752 30.957 1.00127.82 ATOM 94 CB PHE C 253 -112.868 0.612 32.784 1.00 89.32 ATOM 95 N ASP C 254 -115.731 1.374 33.175 1.00152.97 ATOM 96 CA ASP C 254 -116.856 2.291 33.368 1.00136.59 ATOM 97 C ASP C 254 -116.414 3.756 33.316 1.00126.76 ATOM 98 O ASP C 254 -115.925 4.300 34.310 1.00116.01 ATOM 99 CB ASP C 254 -117.558 2.004 34.700 1.00133.90 ATOM 100 N ILE C 255 -116.588 4.379 32.151 1.00116.99 ATOM 101 CA ILE C 255 -116.279 5.797 31.962 1.00106.22 ATOM 102 C ILE C 255 -117.428 6.655 32.490 1.00119.15 ATOM 103 O ILE C 255 -118.456 6.803 31.823 1.00123.93 ATOM 104 CB ILE C 255 -116.040 6.129 30.476 1.00104.60 ATOM 105 N GLU C 256 -117.247 7.204 33.692 1.00101.19 ATOM 106 CA GLU C 256 -118.256 8.042 34.351 1.00123.63 ATOM 107 C GLU C 256 -117.627 9.303 34.940 1.00133.30 ATOM 108 O GLU C 256 -116.436 9.322 35.261 1.00124.69 ATOM 109 CB GLU C 256 -118.958 7.251 35.456 1.00135.83 ATOM 110 N ALA C 257 -118.439 10.350 35.075 1.00164.04 ATOM 111 CA ALA C 257 -117.986 11.632 35.624 1.00150.26 ATOM 112 C ALA C 257 -119.167 12.479 36.103 1.00163.26 ATOM 113 O ALA C 257 -120.206 12.532 35.439 1.00157.84 ATOM 114 CB ALA C 257 -117.179 12.393 34.583 1.00 98.88 ATOM 115 N ASN C 258 -118.989 13.136 37.251 1.00163.66 ATOM 116 CA ASN C 258 -120.023 13.971 37.881 1.00162.82 ATOM 117 C ASN C 258 -121.311 13.219 38.254 1.00144.81 ATOM 118 O ASN C 258 -122.400 13.802 38.253 1.00135.74 ATOM 119 CB ASN C 258 -120.349 15.178 36.990 1.00153.62 ATOM 120 N GLY C 259 -121.177 11.935 38.589 1.00134.07 ATOM 121 CA GLY C 259 -122.320 11.086 38.927 1.00117.23 ATOM 122 C GLY C 259 -123.213 10.796 37.734 1.00132.39 ATOM 123 O GLY C 259 -124.428 11.002 37.798 1.00155.07 ATOM 124 N LYS C 260 -122.606 10.321 36.647 1.00140.92 ATOM 125 CA LYS C 260 -123.333 10.027 35.408 1.00151.72 ATOM 126 C LYS C 260 -122.530 9.100 34.493 1.00178.69 ATOM 127 O LYS C 260 -121.502 9.502 33.942 1.00192.84 ATOM 128 CB LYS C 260 -123.660 11.326 34.667 1.00113.85 ATOM 129 N VAL C 261 -123.008 7.864 34.337 1.00193.08 ATOM 130 CA VAL C 261 -122.350 6.866 33.491 1.00182.24 ATOM 131 C VAL C 261 -122.680 7.102 32.017 1.00168.33 ATOM 132 O VAL C 261 -123.783 6.784 31.563 1.00134.93 ATOM 133 CB VAL C 261 -122.773 5.436 33.878 1.00148.92 ATOM 134 N TYR C 262 -121.720 7.661 31.280 1.00160.59 ATOM 135 CA TYR C 262 -121.890 7.950 29.853 1.00139.32 ATOM 136 C TYR C 262 -121.709 6.690 29.014 1.00135.49 ATOM 137 O TYR C 262 -122.595 6.320 28.240 1.00128.02 ATOM 138 CB TYR C 262 -120.891 9.018 29.401 1.00124.93 ATOM 139 N VAL C 263 -120.553 6.045 29.175 1.00134.14 ATOM 140 CA VAL C 263 -120.204 4.825 28.442 1.00146.41 ATOM 141 C VAL C 263 -119.560 3.798 29.377 1.00123.28 ATOM 142 O VAL C 263 -118.423 3.980 29.821 1.00 83.93 ATOM 143 CB VAL C 263 -119.230 5.128 27.289 1.00133.35 ATOM 144 N GLU C 264 -120.296 2.726 29.671 1.00128.29 ATOM 145 CA GLU C 264 -119.831 1.653 30.559 1.00113.05 ATOM 146 C GLU C 264 -118.835 0.696 29.871 1.00 95.41 ATOM 147 O GLU C 264 -118.316 1.009 28.798 1.00 81.47 ATOM 148 CB GLU C 264 -121.037 0.892 31.113 1.00121.08 ATOM 149 N LYS C 265 -118.569 -0.459 30.492 1.00 87.34 ATOM 150 CA LYS C 265 -117.529 -1.395 30.031 1.00108.46 ATOM 151 C LYS C 265 -118.087 -2.580 29.232 1.00117.41 ATOM 152 O LYS C 265 -118.649 -3.514 29.810 1.00131.27 ATOM 153 CB LYS C 265 -116.738 -1.924 31.232 1.00116.75 ATOM 154 N GLY C 266 -117.923 -2.535 27.908 1.00127.64 ATOM 155 CA GLY C 266 -118.334 -3.635 27.024 1.00130.73 ATOM 156 C GLY C 266 -118.435 -3.230 25.563 1.00166.08 ATOM 157 O GLY C 266 -117.505 -3.454 24.785 1.00152.70 ATOM 158 N ARG C 267 -119.572 -2.640 25.196 1.00188.70 ATOM 159 CA ARG C 267 -119.825 -2.178 23.823 1.00182.88 ATOM 160 C ARG C 267 -118.964 -0.975 23.421 1.00174.07 ATOM 161 O ARG C 267 -118.333 -0.333 24.265 1.00167.59 ATOM 162 CB ARG C 267 -121.305 -1.832 23.642 1.00168.22 ATOM 163 N ARG C 268 -118.965 -0.675 22.123 1.00170.77 ATOM 164 CA ARG C 268 -118.092 0.354 21.544 1.00163.85 ATOM 165 C ARG C 268 -118.571 1.781 21.812 1.00171.29 ATOM 166 O ARG C 268 -119.712 1.999 22.229 1.00152.18 ATOM 167 CB ARG C 268 -117.952 0.142 20.034 1.00139.20 ATOM 168 N ILE C 269 -117.679 2.740 21.558 1.00173.05 ATOM 169 CA ILE C 269 -117.944 4.167 21.754 1.00173.30 ATOM 170 C ILE C 269 -118.164 4.867 20.412 1.00184.72 ATOM 171 O ILE C 269 -117.250 4.936 19.587 1.00161.47 ATOM 172 CB ILE C 269 -116.769 4.853 22.475 1.00143.99 ATOM 173 N THR C 270 -119.377 5.383 20.207 1.00196.54 ATOM 174 CA THR C 270 -119.748 6.087 18.975 1.00186.75 ATOM 175 C THR C 270 -119.418 7.582 19.057 1.00202.05 ATOM 176 O THR C 270 -118.915 8.060 20.078 1.00193.39 ATOM 177 CB THR C 270 -121.253 5.925 18.681 1.00134.01 ATOM 178 N ALA C 271 -119.700 8.306 17.974 1.00202.87 ATOM 179 CA ALA C 271 -119.491 9.760 17.915 1.00178.80 ATOM 180 C ALA C 271 -120.453 10.556 18.809 1.00188.58 ATOM 181 O ALA C 271 -120.133 11.677 19.210 1.00196.59 ATOM 182 CB ALA C 271 -119.592 10.249 16.476 1.00141.84 ATOM 183 N ARG C 272 -121.623 9.985 19.105 1.00195.49 ATOM 184 CA ARG C 272 -122.610 10.617 19.991 1.00184.88 ATOM 185 C ARG C 272 -122.124 10.734 21.440 1.00182.14 ATOM 186 O ARG C 272 -122.413 11.726 22.113 1.00153.83 ATOM 187 CB ARG C 272 -123.932 9.844 19.957 1.00169.14 ATOM 188 N HIS C 273 -121.399 9.718 21.911 1.00179.07 ATOM 189 CA HIS C 273 -120.798 9.729 23.252 1.00145.04 ATOM 190 C HIS C 273 -119.702 10.791 23.401 1.00165.64 ATOM 191 O HIS C 273 -119.519 11.344 24.488 1.00159.82 ATOM 192 CB HIS C 273 -120.227 8.350 23.594 1.00139.01 ATOM 193 N ILE C 274 -118.973 11.056 22.315 1.00194.55 ATOM 194 CA ILE C 274 -117.980 12.136 22.274 1.00192.26 ATOM 195 C ILE C 274 -118.623 13.519 22.404 1.00197.36 ATOM 196 O ILE C 274 -118.058 14.410 23.043 1.00185.07 ATOM 197 CB ILE C 274 -117.159 12.099 20.970 1.00164.96 ATOM 198 N ARG C 275 -119.795 13.691 21.790 1.00203.58 ATOM 199 CA ARG C 275 -120.582 14.924 21.917 1.00168.51 ATOM 200 C ARG C 275 -121.127 15.125 23.335 1.00167.34 ATOM 201 O ARG C 275 -121.190 16.257 23.821 1.00158.02 ATOM 202 CB ARG C 275 -121.741 14.925 20.917 1.00149.95 ATOM 203 N GLN C 276 -121.525 14.029 23.983 1.00157.16 ATOM 204 CA GLN C 276 -122.000 14.060 25.372 1.00148.07 ATOM 205 C GLN C 276 -120.883 14.401 26.362 1.00178.18 ATOM 206 O GLN C 276 -121.099 15.167 27.304 1.00170.41 ATOM 207 CB GLN C 276 -122.632 12.718 25.753 1.00146.24 ATOM 208 N LEU C 277 -119.700 13.824 26.145 1.00199.15 ATOM 209 CA LEU C 277 -118.522 14.098 26.978 1.00175.82 ATOM 210 C LEU C 277 -117.982 15.517 26.776 1.00160.61 ATOM 211 O LEU C 277 -117.602 16.180 27.744 1.00145.79 ATOM 212 CB LEU C 277 -117.414 13.082 26.689 1.00171.13 ATOM 213 N GLU C 278 -117.945 15.966 25.521 1.00175.09 ATOM 214 CA GLU C 278 -117.490 17.320 25.179 1.00165.05 ATOM 215 C GLU C 278 -118.440 18.420 25.667 1.00165.32 ATOM 216 O GLU C 278 -117.991 19.518 26.004 1.00131.41 ATOM 217 CB GLU C 278 -117.292 17.451 23.666 1.00167.13 ATOM 218 N LYS C 279 -119.741 18.126 25.692 1.00168.09 ATOM 219 CA LYS C 279 -120.754 19.072 26.177 1.00145.92 ATOM 220 C LYS C 279 -120.657 19.302 27.687 1.00129.24 ATOM 221 O LYS C 279 -120.703 20.444 28.149 1.00115.83 ATOM 222 CB LYS C 279 -122.161 18.580 25.823 1.00108.17 ATOM 223 N ASP C 280 -120.519 18.213 28.443 1.00135.46 ATOM 224 CA ASP C 280 -120.390 18.277 29.905 1.00152.20 ATOM 225 C ASP C 280 -119.020 18.768 30.398 1.00177.38 ATOM 226 O ASP C 280 -118.892 19.141 31.567 1.00175.35 ATOM 227 CB ASP C 280 -120.685 16.905 30.520 1.00155.24 ATOM 228 N ASP C 281 -118.011 18.753 29.521 1.00191.74 ATOM 229 CA ASP C 281 -116.645 19.195 29.843 1.00169.69 ATOM 230 C ASP C 281 -115.958 18.245 30.829 1.00156.48 ATOM 231 O ASP C 281 -115.370 18.678 31.825 1.00119.84 ATOM 232 CB ASP C 281 -116.636 20.639 30.367 1.00140.59 ATOM 233 N VAL C 282 -116.034 16.949 30.530 1.00187.15 ATOM 234 CA VAL C 282 -115.431 15.910 31.364 1.00194.56 ATOM 235 C VAL C 282 -113.940 15.791 31.060 1.00206.59 ATOM 236 O VAL C 282 -113.561 15.473 29.930 1.00205.15 ATOM 237 CB VAL C 282 -116.095 14.541 31.124 1.00172.09 ATOM 238 N LYS C 283 -113.107 16.056 32.067 1.00199.65 ATOM 239 CA LYS C 283 -111.649 15.933 31.949 1.00192.19 ATOM 240 C LYS C 283 -111.025 15.308 33.205 1.00178.74 ATOM 241 O LYS C 283 -109.913 15.670 33.601 1.00174.08 ATOM 242 CB LYS C 283 -111.030 17.307 31.676 1.00157.72 ATOM 243 N LEU C 284 -111.740 14.358 33.811 1.00144.51 ATOM 244 CA LEU C 284 -111.283 13.681 35.027 1.00140.06 ATOM 245 C LEU C 284 -112.183 12.486 35.351 1.00101.88 ATOM 246 O LEU C 284 -113.369 12.665 35.640 1.00 95.44 ATOM 247 CB LEU C 284 -111.273 14.650 36.212 1.00118.12 ATOM 248 N ILE C 285 -111.619 11.280 35.293 1.00109.41 ATOM 249 CA ILE C 285 -112.365 10.049 35.575 1.00104.15 ATOM 250 C ILE C 285 -111.452 8.926 36.063 1.00 93.18 ATOM 251 O ILE C 285 -110.257 8.905 35.756 1.00 95.94 ATOM 252 CB ILE C 285 -113.121 9.558 34.326 1.00127.44 ATOM 253 N GLU C 286 -112.032 7.995 36.819 1.00 94.07 ATOM 254 CA GLU C 286 -111.292 6.864 37.384 1.00 98.25 ATOM 255 C GLU C 286 -111.072 5.771 36.339 1.00102.28 ATOM 256 O GLU C 286 -111.897 5.586 35.440 1.00112.89 ATOM 257 CB GLU C 286 -112.038 6.284 38.588 1.00141.88 ATOM 258 N VAL C 287 -109.955 5.054 36.472 1.00116.44 ATOM 259 CA VAL C 287 -109.594 3.961 35.562 1.00153.60 ATOM 260 C VAL C 287 -108.917 2.816 36.314 1.00112.29 ATOM 261 O VAL C 287 -108.292 3.031 37.354 1.00 56.13 ATOM 262 CB VAL C 287 -108.646 4.450 34.452 1.00159.04 ATOM 263 N PRO C 288 -109.042 1.590 35.781 1.00142.31 ATOM 264 CA PRO C 288 -108.479 0.369 36.354 1.00132.10 ATOM 265 C PRO C 288 -106.991 0.184 36.047 1.00118.15 ATOM 266 O PRO C 288 -106.413 0.947 35.268 1.00111.35 ATOM 267 CB PRO C 288 -109.299 -0.737 35.685 1.00134.17 TER