HEADER hydrolase/rna 31-DEC-69 5F9H TITLE Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' TITLE 2 triphosphate hairpin RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: Probable ATP-dependent RNA helicase DDX58; COMPND 3 CHAIN: A, C, E, G, I, K; COMPND 4 EC: 3.6.4.13; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.10 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER I 238 REMARK 465 LEU I 263 REMARK 465 GLU I 264 REMARK 465 ASN I 265 REMARK 465 LEU I 266 REMARK 465 SER I 267 REMARK 465 GLN I 268 REMARK 465 ILE I 269 REMARK 465 GLN I 270 REMARK 465 ASN I 271 REMARK 465 ARG I 272 REMARK 465 GLY I 348 DBREF 5F9H I 232 925 UNP O95786 DDX58_HUMAN 232 925 SEQRES 1 I 216 GLU GLN VAL VAL TYR LYS PRO GLN LYS PHE PHE ARG LYS SEQRES 2 I 216 VAL GLU SER ARG ILE SER ASP LYS PHE LYS TYR ILE ILE SEQRES 3 I 216 ALA GLN LEU MET ARG ASP THR GLU SER LEU ALA LYS ARG SEQRES 4 I 216 ILE CYS LYS ASP LEU GLU ASN LEU SER GLN ILE GLN ASN SEQRES 5 I 216 ARG GLU PHE GLY THR GLN LYS TYR GLU GLN TRP ILE VAL SEQRES 6 I 216 THR VAL GLN LYS ALA CYS MET VAL PHE GLN MET PRO ASP SEQRES 7 I 216 LYS ASP GLU GLU SER ARG ILE CYS LYS ALA LEU PHE LEU SEQRES 8 I 216 TYR THR SER HIS LEU ARG LYS TYR ASN ASP ALA LEU ILE SEQRES 9 I 216 ILE SER GLU HIS ALA ARG MET LYS ASP ALA LEU ASP TYR SEQRES 10 I 216 LEU LYS ASP PHE PHE SER ASN VAL ARG ALA ALA GLY PHE SEQRES 11 I 216 ASP GLU ILE GLU GLN ASP LEU THR GLN ARG PHE GLU GLU SEQRES 12 I 216 LYS LEU GLN GLU LEU GLU SER VAL SER ARG ASP PRO SER SEQRES 13 I 216 ASN GLU ASN PRO LYS LEU GLU ASP LEU CYS PHE ILE LEU SEQRES 14 I 216 GLN GLU GLU TYR HIS LEU ASN PRO GLU THR ILE THR ILE SEQRES 15 I 216 LEU PHE VAL LYS THR ARG ALA LEU VAL ASP ALA LEU LYS SEQRES 16 I 216 ASN TRP ILE GLU GLY ASN PRO LYS LEU SER PHE LEU LYS SEQRES 17 I 216 PRO GLY ILE LEU THR GLY ARG GLY SEQRES 1 I 31 GLY ASP HIS ASN ILE LEU ILE ALA THR SER VAL ALA ASP SEQRES 2 I 31 GLU GLY ILE ASP ILE ALA GLN CYS ASN LEU VAL ILE LEU SEQRES 3 I 31 TYR GLU TYR VAL GLY ATOM 1 N GLY I 689 -10.325 -0.105 67.447 1.00114.16 ATOM 2 CA GLY I 689 -10.715 1.291 67.518 1.00115.04 ATOM 3 C GLY I 689 -11.578 1.716 66.346 1.00117.86 ATOM 4 O GLY I 689 -11.851 0.925 65.444 1.00119.56 ATOM 5 N ASP I 690 -12.015 2.971 66.365 1.00107.28 ATOM 6 CA ASP I 690 -12.859 3.507 65.303 1.00105.64 ATOM 7 C ASP I 690 -12.050 3.932 64.078 1.00 93.81 ATOM 8 O ASP I 690 -12.524 3.827 62.947 1.00 91.84 ATOM 9 CB ASP I 690 -13.678 4.689 65.825 1.00112.33 ATOM 10 CG ASP I 690 -15.095 4.700 65.284 1.00119.71 ATOM 11 OD1 ASP I 690 -15.263 4.647 64.048 1.00123.35 ATOM 12 OD2 ASP I 690 -16.042 4.754 66.098 1.00122.81 ATOM 13 N HIS I 691 -10.830 4.413 64.307 1.00 78.58 ATOM 14 CA HIS I 691 -9.999 4.934 63.224 1.00 72.80 ATOM 15 C HIS I 691 -8.660 4.212 63.098 1.00 71.78 ATOM 16 O HIS I 691 -7.956 4.009 64.087 1.00 72.91 ATOM 17 CB HIS I 691 -9.749 6.430 63.422 1.00 66.93 ATOM 18 CG HIS I 691 -10.989 7.265 63.365 1.00 62.16 ATOM 19 ND1 HIS I 691 -11.466 7.808 62.191 1.00 59.11 ATOM 20 CD2 HIS I 691 -11.846 7.656 64.336 1.00 60.78 ATOM 21 CE1 HIS I 691 -12.566 8.496 62.442 1.00 59.33 ATOM 22 NE2 HIS I 691 -12.818 8.419 63.737 1.00 60.14 ATOM 23 N ASN I 692 -8.317 3.826 61.873 1.00 84.21 ATOM 24 CA ASN I 692 -7.013 3.238 61.587 1.00 81.46 ATOM 25 C ASN I 692 -5.916 4.285 61.420 1.00 74.76 ATOM 26 O ASN I 692 -4.809 4.120 61.929 1.00 71.11 ATOM 27 CB ASN I 692 -7.088 2.366 60.334 1.00 87.89 ATOM 28 CG ASN I 692 -7.587 0.968 60.628 1.00 99.55 ATOM 29 OD1 ASN I 692 -8.007 0.669 61.746 1.00101.88 ATOM 30 ND2 ASN I 692 -7.544 0.101 59.624 1.00107.91 ATOM 31 N ILE I 693 -6.228 5.362 60.705 1.00 65.01 ATOM 32 CA ILE I 693 -5.248 6.411 60.444 1.00 61.82 ATOM 33 C ILE I 693 -5.787 7.785 60.835 1.00 57.24 ATOM 34 O ILE I 693 -6.927 8.128 60.531 1.00 60.28 ATOM 35 CB ILE I 693 -4.816 6.421 58.957 1.00 62.76 ATOM 36 CG1 ILE I 693 -3.907 7.617 58.662 1.00 58.62 ATOM 37 CG2 ILE I 693 -6.027 6.425 58.038 1.00 64.60 ATOM 38 CD1 ILE I 693 -3.460 7.705 57.220 1.00 58.12 ATOM 39 N LEU I 694 -4.958 8.562 61.524 1.00 65.11 ATOM 40 CA LEU I 694 -5.344 9.887 61.990 1.00 65.45 ATOM 41 C LEU I 694 -4.558 10.980 61.271 1.00 62.93 ATOM 42 O LEU I 694 -3.351 11.113 61.461 1.00 66.95 ATOM 43 CB LEU I 694 -5.135 9.994 63.501 1.00 72.26 ATOM 44 CG LEU I 694 -5.434 11.346 64.146 1.00 79.78 ATOM 45 CD1 LEU I 694 -6.891 11.724 63.942 1.00 81.75 ATOM 46 CD2 LEU I 694 -5.085 11.315 65.625 1.00 86.24 ATOM 47 N ILE I 695 -5.250 11.758 60.446 1.00 49.97 ATOM 48 CA ILE I 695 -4.621 12.843 59.700 1.00 47.65 ATOM 49 C ILE I 695 -4.645 14.142 60.499 1.00 50.62 ATOM 50 O ILE I 695 -5.704 14.600 60.921 1.00 53.96 ATOM 51 CB ILE I 695 -5.316 13.068 58.348 1.00 41.16 ATOM 52 CG1 ILE I 695 -5.382 11.758 57.561 1.00 43.04 ATOM 53 CG2 ILE I 695 -4.595 14.141 57.552 1.00 39.25 ATOM 54 CD1 ILE I 695 -6.053 11.885 56.215 1.00 45.26 ATOM 55 N ALA I 696 -3.474 14.737 60.699 1.00 43.05 ATOM 56 CA ALA I 696 -3.358 15.930 61.528 1.00 42.52 ATOM 57 C ALA I 696 -2.414 16.961 60.921 1.00 41.39 ATOM 58 O ALA I 696 -1.691 16.670 59.969 1.00 34.66 ATOM 59 CB ALA I 696 -2.895 15.553 62.926 1.00 42.81 ATOM 60 N THR I 697 -2.435 18.171 61.472 1.00 55.28 ATOM 61 CA THR I 697 -1.529 19.226 61.036 1.00 57.44 ATOM 62 C THR I 697 -0.267 19.239 61.890 1.00 55.92 ATOM 63 O THR I 697 0.804 18.836 61.438 1.00 62.77 ATOM 64 CB THR I 697 -2.194 20.609 61.109 1.00 54.83 ATOM 65 OG1 THR I 697 -2.668 20.839 62.441 1.00 56.09 ATOM 66 CG2 THR I 697 -3.361 20.692 60.143 1.00 53.47 ATOM 67 N SER I 698 -0.402 19.708 63.126 1.00 58.88 ATOM 68 CA SER I 698 0.693 19.672 64.087 1.00 62.84 ATOM 69 C SER I 698 0.157 19.757 65.511 1.00 61.42 ATOM 70 O SER I 698 -0.961 20.218 65.739 1.00 59.58 ATOM 71 CB SER I 698 1.688 20.806 63.828 1.00 67.82 ATOM 72 OG SER I 698 1.101 22.071 64.076 1.00 73.54 ATOM 73 N VAL I 699 0.962 19.312 66.468 1.00 41.76 ATOM 74 CA VAL I 699 0.578 19.355 67.870 1.00 41.73 ATOM 75 C VAL I 699 1.666 20.039 68.684 1.00 43.30 ATOM 76 O VAL I 699 2.838 19.678 68.586 1.00 42.81 ATOM 77 CB VAL I 699 0.324 17.945 68.436 1.00 41.44 ATOM 78 CG1 VAL I 699 0.021 18.015 69.924 1.00 38.69 ATOM 79 CG2 VAL I 699 -0.810 17.266 67.686 1.00 42.42 ATOM 80 N ALA I 700 1.279 21.032 69.477 1.00 47.89 ATOM 81 CA ALA I 700 2.238 21.745 70.308 1.00 44.09 ATOM 82 C ALA I 700 2.858 20.805 71.335 1.00 41.57 ATOM 83 O ALA I 700 2.148 20.165 72.110 1.00 38.29 ATOM 84 CB ALA I 700 1.571 22.924 70.997 1.00 43.51 ATOM 85 N ASP I 701 4.186 20.740 71.327 1.00 51.30 ATOM 86 CA ASP I 701 4.953 19.883 72.228 1.00 53.28 ATOM 87 C ASP I 701 4.472 18.435 72.218 1.00 52.15 ATOM 88 O ASP I 701 4.145 17.886 71.166 1.00 47.23 ATOM 89 CB ASP I 701 4.905 20.439 73.652 1.00 57.71 ATOM 90 CG ASP I 701 5.572 21.794 73.769 1.00 60.99 ATOM 91 OD1 ASP I 701 6.557 22.036 73.041 1.00 61.89 ATOM 92 OD2 ASP I 701 5.110 22.618 74.586 1.00 61.37 ATOM 93 N GLU I 702 4.420 17.826 73.397 1.00 47.07 ATOM 94 CA GLU I 702 4.001 16.437 73.523 1.00 50.80 ATOM 95 C GLU I 702 2.483 16.335 73.578 1.00 48.21 ATOM 96 O GLU I 702 1.855 15.770 72.684 1.00 43.91 ATOM 97 CB GLU I 702 4.619 15.795 74.769 1.00 54.81 ATOM 98 CG GLU I 702 6.140 15.760 74.768 1.00 55.69 ATOM 99 CD GLU I 702 6.709 15.045 75.980 1.00 57.02 ATOM 100 OE1 GLU I 702 5.933 14.387 76.703 1.00 54.05 ATOM 101 OE2 GLU I 702 7.933 15.139 76.209 1.00 59.79 ATOM 102 N GLY I 703 1.901 16.886 74.638 1.00 55.14 ATOM 103 CA GLY I 703 0.464 16.850 74.822 1.00 54.27 ATOM 104 C GLY I 703 0.009 15.543 75.436 1.00 57.95 ATOM 105 O GLY I 703 0.825 14.753 75.908 1.00 57.17 ATOM 106 N ILE I 704 -1.299 15.316 75.429 1.00 59.56 ATOM 107 CA ILE I 704 -1.873 14.087 75.962 1.00 62.76 ATOM 108 C ILE I 704 -1.539 12.899 75.069 1.00 73.51 ATOM 109 O ILE I 704 -1.657 12.980 73.846 1.00 77.85 ATOM 110 CB ILE I 704 -3.402 14.201 76.107 1.00 61.49 ATOM 111 CG1 ILE I 704 -3.754 15.315 77.090 1.00 61.29 ATOM 112 CG2 ILE I 704 -4.002 12.885 76.570 1.00 62.98 ATOM 113 CD1 ILE I 704 -3.147 15.127 78.457 1.00 61.45 ATOM 114 N ASP I 705 -1.116 11.800 75.687 1.00 79.14 ATOM 115 CA ASP I 705 -0.784 10.585 74.955 1.00 87.66 ATOM 116 C ASP I 705 -1.990 10.041 74.198 1.00 94.31 ATOM 117 O ASP I 705 -3.073 9.891 74.761 1.00 93.84 ATOM 118 CB ASP I 705 -0.244 9.515 75.906 1.00 91.83 ATOM 119 CG ASP I 705 1.036 9.938 76.595 1.00 95.82 ATOM 120 OD1 ASP I 705 1.759 10.792 76.038 1.00 96.41 ATOM 121 OD2 ASP I 705 1.322 9.415 77.692 1.00 98.01 ATOM 122 N ILE I 706 -1.794 9.757 72.915 1.00102.89 ATOM 123 CA ILE I 706 -2.831 9.144 72.098 1.00110.26 ATOM 124 C ILE I 706 -2.527 7.665 71.911 1.00117.88 ATOM 125 O ILE I 706 -1.571 7.146 72.488 1.00120.61 ATOM 126 CB ILE I 706 -2.952 9.818 70.719 1.00109.05 ATOM 127 CG1 ILE I 706 -1.703 9.544 69.877 1.00105.64 ATOM 128 CG2 ILE I 706 -3.183 11.313 70.874 1.00109.29 ATOM 129 CD1 ILE I 706 -1.843 9.958 68.428 1.00105.26 ATOM 130 N ALA I 707 -3.351 6.988 71.117 1.00119.91 ATOM 131 CA ALA I 707 -3.103 5.594 70.774 1.00111.42 ATOM 132 C ALA I 707 -1.736 5.455 70.114 1.00 97.65 ATOM 133 O ALA I 707 -1.377 6.249 69.244 1.00 95.13 ATOM 134 CB ALA I 707 -4.196 5.065 69.860 1.00117.13 ATOM 135 N GLN I 708 -0.974 4.454 70.541 1.00 71.58 ATOM 136 CA GLN I 708 0.366 4.244 70.012 1.00 63.77 ATOM 137 C GLN I 708 0.334 3.935 68.521 1.00 55.11 ATOM 138 O GLN I 708 -0.366 3.027 68.077 1.00 53.63 ATOM 139 CB GLN I 708 1.071 3.117 70.768 1.00 66.29 ATOM 140 CG GLN I 708 1.691 3.554 72.084 1.00 63.24 ATOM 141 CD GLN I 708 2.800 4.571 71.892 1.00 57.26 ATOM 142 OE1 GLN I 708 3.871 4.249 71.380 1.00 56.46 ATOM 143 NE2 GLN I 708 2.544 5.809 72.298 1.00 51.51 ATOM 144 N CYS I 709 1.101 4.704 67.757 1.00 78.36 ATOM 145 CA CYS I 709 1.181 4.520 66.315 1.00 76.60 ATOM 146 C CYS I 709 2.489 3.848 65.930 1.00 79.55 ATOM 147 O CYS I 709 3.568 4.374 66.197 1.00 81.10 ATOM 148 CB CYS I 709 1.056 5.862 65.594 1.00 69.91 ATOM 149 SG CYS I 709 -0.354 6.855 66.109 1.00 73.65 ATOM 150 N ASN I 710 2.395 2.682 65.304 1.00 66.78 ATOM 151 CA ASN I 710 3.584 2.006 64.812 1.00 66.06 ATOM 152 C ASN I 710 3.941 2.514 63.422 1.00 61.02 ATOM 153 O ASN I 710 4.911 2.062 62.816 1.00 62.95 ATOM 154 CB ASN I 710 3.384 0.491 64.803 1.00 69.63 ATOM 155 CG ASN I 710 2.235 0.059 63.920 1.00 67.77 ATOM 156 OD1 ASN I 710 1.074 0.115 64.323 1.00 65.76 ATOM 157 ND2 ASN I 710 2.554 -0.386 62.711 1.00 70.54 ATOM 158 N LEU I 711 3.143 3.452 62.919 1.00 53.74 ATOM 159 CA LEU I 711 3.452 4.125 61.664 1.00 42.59 ATOM 160 C LEU I 711 3.179 5.626 61.750 1.00 42.29 ATOM 161 O LEU I 711 2.055 6.060 62.023 1.00 48.05 ATOM 162 CB LEU I 711 2.654 3.510 60.514 1.00 42.43 ATOM 163 CG LEU I 711 3.000 4.027 59.116 1.00 43.05 ATOM 164 CD1 LEU I 711 4.477 3.834 58.827 1.00 43.38 ATOM 165 CD2 LEU I 711 2.152 3.336 58.061 1.00 43.37 ATOM 166 N VAL I 712 4.219 6.415 61.503 1.00 42.32 ATOM 167 CA VAL I 712 4.108 7.867 61.499 1.00 42.37 ATOM 168 C VAL I 712 4.575 8.415 60.159 1.00 43.54 ATOM 169 O VAL I 712 5.747 8.301 59.816 1.00 56.24 ATOM 170 CB VAL I 712 4.944 8.510 62.623 1.00 42.11 ATOM 171 CG1 VAL I 712 4.837 10.023 62.561 1.00 42.22 ATOM 172 CG2 VAL I 712 4.507 7.992 63.982 1.00 41.47 ATOM 173 N ILE I 713 3.665 9.012 59.400 1.00 50.42 ATOM 174 CA ILE I 713 4.032 9.534 58.091 1.00 48.86 ATOM 175 C ILE I 713 4.037 11.055 58.079 1.00 55.25 ATOM 176 O ILE I 713 3.036 11.695 58.385 1.00 67.09 ATOM 177 CB ILE I 713 3.088 9.027 56.991 1.00 46.38 ATOM 178 CG1 ILE I 713 3.029 7.501 57.008 1.00 45.99 ATOM 179 CG2 ILE I 713 3.548 9.518 55.630 1.00 48.00 ATOM 180 CD1 ILE I 713 2.199 6.919 55.898 1.00 46.75 ATOM 181 N LEU I 714 5.181 11.621 57.721 1.00 44.49 ATOM 182 CA LEU I 714 5.339 13.059 57.625 1.00 44.75 ATOM 183 C LEU I 714 5.269 13.468 56.162 1.00 47.66 ATOM 184 O LEU I 714 6.183 13.193 55.379 1.00 63.81 ATOM 185 CB LEU I 714 6.666 13.491 58.249 1.00 44.79 ATOM 186 CG LEU I 714 6.958 12.887 59.625 1.00 44.17 ATOM 187 CD1 LEU I 714 8.394 13.151 60.050 1.00 44.35 ATOM 188 CD2 LEU I 714 5.987 13.424 60.660 1.00 43.59 ATOM 189 N TYR I 715 4.172 14.122 55.799 1.00 46.49 ATOM 190 CA TYR I 715 3.936 14.518 54.421 1.00 48.02 ATOM 191 C TYR I 715 4.389 15.956 54.218 1.00 48.40 ATOM 192 O TYR I 715 3.748 16.886 54.708 1.00 53.42 ATOM 193 CB TYR I 715 2.453 14.363 54.078 1.00 51.13 ATOM 194 CG TYR I 715 2.152 14.272 52.601 1.00 55.29 ATOM 195 CD1 TYR I 715 2.069 13.041 51.966 1.00 57.69 ATOM 196 CD2 TYR I 715 1.935 15.416 51.846 1.00 55.23 ATOM 197 CE1 TYR I 715 1.787 12.950 50.618 1.00 60.30 ATOM 198 CE2 TYR I 715 1.653 15.335 50.497 1.00 58.78 ATOM 199 CZ TYR I 715 1.581 14.100 49.888 1.00 61.54 ATOM 200 OH TYR I 715 1.300 14.014 48.545 1.00 63.97 ATOM 201 N GLU I 716 5.480 16.127 53.475 1.00 47.26 ATOM 202 CA GLU I 716 6.094 17.437 53.260 1.00 51.28 ATOM 203 C GLU I 716 6.276 18.200 54.572 1.00 56.17 ATOM 204 O GLU I 716 5.937 19.378 54.667 1.00 59.60 ATOM 205 CB GLU I 716 5.257 18.264 52.282 1.00 54.21 ATOM 206 CG GLU I 716 5.134 17.659 50.891 1.00 57.67 ATOM 207 CD GLU I 716 6.382 17.850 50.051 1.00 65.68 ATOM 208 OE1 GLU I 716 6.402 17.366 48.900 1.00 67.90 ATOM 209 OE2 GLU I 716 7.340 18.488 50.534 1.00 71.25 ATOM 210 N TYR I 717 6.812 17.517 55.578 1.00 74.69 ATOM 211 CA TYR I 717 6.962 18.097 56.908 1.00 77.46 ATOM 212 C TYR I 717 8.354 18.667 57.148 1.00 78.24 ATOM 213 O TYR I 717 9.361 18.025 56.851 1.00 83.55 ATOM 214 CB TYR I 717 6.644 17.050 57.979 1.00 85.85 ATOM 215 CG TYR I 717 7.336 17.282 59.307 1.00 92.38 ATOM 216 CD1 TYR I 717 6.808 18.157 60.246 1.00 95.46 ATOM 217 CD2 TYR I 717 8.513 16.614 59.625 1.00 94.59 ATOM 218 CE1 TYR I 717 7.438 18.368 61.460 1.00 96.15 ATOM 219 CE2 TYR I 717 9.149 16.818 60.834 1.00 96.73 ATOM 220 CZ TYR I 717 8.607 17.695 61.748 1.00 94.48 ATOM 221 OH TYR I 717 9.239 17.899 62.954 1.00 89.20 ATOM 222 N VAL I 718 8.397 19.875 57.697 1.00 55.91 ATOM 223 CA VAL I 718 9.650 20.496 58.099 1.00 52.37 ATOM 224 C VAL I 718 9.501 21.088 59.496 1.00 54.78 ATOM 225 O VAL I 718 8.597 21.883 59.746 1.00 59.33 ATOM 226 CB VAL I 718 10.086 21.595 57.114 1.00 47.80 ATOM 227 N GLY I 719 10.388 20.697 60.405 1.00 46.15 ATOM 228 CA GLY I 719 10.315 21.153 61.781 1.00 45.64 ATOM 229 C GLY I 719 11.670 21.183 62.458 1.00 45.76 ATOM 230 O GLY I 719 12.686 20.873 61.840 1.00 46.28 TER