HEADER hydrolase/hydrolase inhibitor 24-JUN-16 5GIM TITLE Crystal structure of thrombin-avathrin complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Thrombin light chain; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.5; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.09 ANGSTORMS DBREF 5GIM A 1 14 UNP P00734 THRB_HUMAN 328 363 SEQRES 1 A 30 SER GLY GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU SEQRES 2 A 30 LYS LYS SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU SEQRES 3 A 30 GLU SER TYR ILE ATOM 1 N SER A 1E -2.945 13.915 90.547 1.00 73.93 ATOM 2 CA SER A 1E -1.828 14.913 90.621 1.00 71.14 ATOM 3 C SER A 1E -0.446 14.310 90.350 1.00 62.62 ATOM 4 O SER A 1E 0.410 14.982 89.776 1.00 59.31 ATOM 5 CB SER A 1E -1.836 15.637 91.974 1.00 78.51 ATOM 6 OG SER A 1E -1.656 14.733 93.049 1.00 80.09 ATOM 7 N GLY A 1D -0.235 13.050 90.747 1.00 60.20 ATOM 8 CA GLY A 1D 1.012 12.322 90.468 1.00 52.73 ATOM 9 C GLY A 1D 1.320 12.022 89.004 1.00 46.64 ATOM 10 O GLY A 1D 2.425 11.568 88.696 1.00 41.54 ATOM 11 N GLU A 1C 0.345 12.243 88.111 1.00 47.94 ATOM 12 CA GLU A 1C 0.543 12.108 86.654 1.00 43.75 ATOM 13 C GLU A 1C 1.743 12.900 86.145 1.00 39.95 ATOM 14 O GLU A 1C 2.586 12.350 85.450 1.00 35.75 ATOM 15 CB GLU A 1C -0.712 12.529 85.860 1.00 47.74 ATOM 16 CG GLU A 1C -1.590 11.371 85.402 1.00 49.02 ATOM 17 CD GLU A 1C -2.561 11.774 84.306 1.00 52.03 ATOM 18 OE1 GLU A 1C -3.510 12.533 84.600 1.00 57.50 ATOM 19 OE2 GLU A 1C -2.380 11.332 83.149 1.00 49.90 ATOM 20 N ALA A 1B 1.824 14.180 86.513 1.00 42.43 ATOM 21 CA ALA A 1B 2.895 15.070 86.040 1.00 40.87 ATOM 22 C ALA A 1B 4.275 14.407 86.084 1.00 35.41 ATOM 23 O ALA A 1B 5.029 14.455 85.118 1.00 33.36 ATOM 24 CB ALA A 1B 2.908 16.357 86.854 1.00 46.01 ATOM 25 N ASP A 1A 4.582 13.761 87.200 1.00 33.77 ATOM 26 CA ASP A 1A 5.900 13.202 87.419 1.00 29.69 ATOM 27 C ASP A 1A 6.002 11.677 87.206 1.00 25.35 ATOM 28 O ASP A 1A 7.020 11.060 87.552 1.00 22.77 ATOM 29 CB ASP A 1A 6.344 13.590 88.833 1.00 32.43 ATOM 30 CG ASP A 1A 7.835 13.645 88.975 1.00 30.76 ATOM 31 OD1 ASP A 1A 8.521 13.959 87.973 1.00 29.74 ATOM 32 OD2 ASP A 1A 8.329 13.383 90.095 1.00 31.94 ATOM 33 N CYS A 1 4.991 11.069 86.593 1.00 25.00 ATOM 34 CA CYS A 1 4.958 9.612 86.447 1.00 22.94 ATOM 35 C CYS A 1 6.163 9.113 85.640 1.00 19.19 ATOM 36 O CYS A 1 6.656 9.804 84.762 1.00 18.39 ATOM 37 CB CYS A 1 3.627 9.133 85.819 1.00 25.18 ATOM 38 SG CYS A 1 3.375 9.559 84.074 1.00 24.73 ATOM 39 N GLY A 2 6.654 7.934 85.995 1.00 17.92 ATOM 40 CA GLY A 2 7.637 7.208 85.182 1.00 15.85 ATOM 41 C GLY A 2 9.042 7.770 85.192 1.00 14.05 ATOM 42 O GLY A 2 9.878 7.336 84.373 1.00 13.46 ATOM 43 N LEU A 3 9.309 8.715 86.104 1.00 14.09 ATOM 44 CA LEU A 3 10.613 9.320 86.264 1.00 13.50 ATOM 45 C LEU A 3 11.123 8.925 87.657 1.00 13.34 ATOM 46 O LEU A 3 10.607 9.386 88.692 1.00 15.13 ATOM 47 CB LEU A 3 10.539 10.846 86.111 1.00 15.55 ATOM 48 CG LEU A 3 10.050 11.353 84.747 1.00 16.89 ATOM 49 CD1 LEU A 3 9.790 12.860 84.790 1.00 20.30 ATOM 50 CD2 LEU A 3 11.054 11.024 83.641 1.00 16.83 ATOM 51 N ARG A 4 12.132 8.065 87.662 1.00 12.08 ATOM 52 CA ARG A 4 12.606 7.418 88.874 1.00 12.53 ATOM 53 C ARG A 4 13.531 8.339 89.632 1.00 13.48 ATOM 54 O ARG A 4 14.478 8.877 89.041 1.00 13.22 ATOM 55 CB ARG A 4 13.351 6.124 88.546 1.00 11.84 ATOM 56 CG ARG A 4 12.491 5.093 87.823 1.00 12.20 ATOM 57 CD ARG A 4 13.315 3.907 87.397 1.00 12.73 ATOM 58 NE ARG A 4 14.266 4.275 86.341 1.00 12.17 ATOM 59 CZ ARG A 4 15.155 3.451 85.787 1.00 13.46 ATOM 60 NH1 ARG A 4 15.236 2.181 86.181 1.00 15.18 ATOM 61 NH2 ARG A 4 15.972 3.907 84.832 1.00 14.19 ATOM 62 N PRO A 5 13.284 8.513 90.935 1.00 15.63 ATOM 63 CA PRO A 5 14.163 9.372 91.721 1.00 17.64 ATOM 64 C PRO A 5 15.650 9.031 91.629 1.00 17.00 ATOM 65 O PRO A 5 16.472 9.937 91.549 1.00 18.39 ATOM 66 CB PRO A 5 13.657 9.161 93.132 1.00 20.82 ATOM 67 CG PRO A 5 12.206 8.929 92.952 1.00 21.39 ATOM 68 CD PRO A 5 12.109 8.094 91.718 1.00 17.86 ATOM 69 N LEU A 6 15.997 7.743 91.614 1.00 15.97 ATOM 70 CA LEU A 6 17.408 7.370 91.627 1.00 16.33 ATOM 71 C LEU A 6 18.043 7.242 90.234 1.00 15.21 ATOM 72 O LEU A 6 19.245 7.007 90.139 1.00 16.12 ATOM 73 CB LEU A 6 17.646 6.130 92.488 1.00 17.46 ATOM 74 CG LEU A 6 17.366 6.300 93.984 1.00 20.66 ATOM 75 CD1 LEU A 6 17.565 4.964 94.684 1.00 22.78 ATOM 76 CD2 LEU A 6 18.225 7.373 94.661 1.00 23.00 ATOM 77 N PHE A 7 17.254 7.438 89.175 1.00 14.19 ATOM 78 CA PHE A 7 17.755 7.340 87.810 1.00 14.56 ATOM 79 C PHE A 7 17.447 8.618 87.000 1.00 15.73 ATOM 80 O PHE A 7 18.260 9.559 87.038 1.00 18.07 ATOM 81 CB PHE A 7 17.282 6.025 87.189 1.00 13.86 ATOM 82 CG PHE A 7 17.917 4.843 87.838 1.00 14.67 ATOM 83 CD1 PHE A 7 19.204 4.463 87.490 1.00 16.55 ATOM 84 CD2 PHE A 7 17.279 4.181 88.889 1.00 14.76 ATOM 85 CE1 PHE A 7 19.833 3.416 88.149 1.00 18.04 ATOM 86 CE2 PHE A 7 17.899 3.123 89.537 1.00 16.58 ATOM 87 CZ PHE A 7 19.177 2.741 89.171 1.00 17.98 ATOM 88 N GLU A 8 16.273 8.692 86.369 1.00 14.33 ATOM 89 CA GLU A 8 15.919 9.820 85.495 1.00 15.65 ATOM 90 C GLU A 8 16.050 11.166 86.197 1.00 16.76 ATOM 91 O GLU A 8 16.582 12.117 85.624 1.00 17.65 ATOM 92 CB GLU A 8 14.489 9.716 84.943 1.00 17.21 ATOM 93 CG GLU A 8 14.281 8.679 83.845 1.00 17.31 ATOM 94 CD GLU A 8 14.288 7.247 84.364 1.00 15.78 ATOM 95 OE1 GLU A 8 14.683 6.341 83.615 1.00 15.02 ATOM 96 OE2 GLU A 8 13.901 7.030 85.530 1.00 15.88 ATOM 97 N LYS A 9 15.568 11.240 87.436 1.00 17.39 ATOM 98 CA LYS A 9 15.612 12.494 88.199 1.00 18.91 ATOM 99 C LYS A 9 17.026 12.993 88.452 1.00 18.49 ATOM 100 O LYS A 9 17.243 14.190 88.537 1.00 19.75 ATOM 101 CB LYS A 9 14.891 12.338 89.530 1.00 20.30 ATOM 102 CG LYS A 9 13.398 12.169 89.366 1.00 22.96 ATOM 103 CD LYS A 9 12.688 13.515 89.377 1.00 25.88 ATOM 104 CE LYS A 9 11.509 13.535 88.417 1.00 28.89 ATOM 105 NZ LYS A 9 10.829 14.851 88.547 1.00 32.54 ATOM 106 N LYS A 10 17.972 12.069 88.579 1.00 17.78 ATOM 107 CA LYS A 10 19.395 12.409 88.739 1.00 18.81 ATOM 108 C LYS A 10 20.218 12.272 87.454 1.00 19.43 ATOM 109 O LYS A 10 21.432 12.416 87.487 1.00 21.44 ATOM 110 CB LYS A 10 20.014 11.503 89.795 1.00 19.32 ATOM 111 CG LYS A 10 19.462 11.718 91.180 1.00 20.27 ATOM 112 CD LYS A 10 19.837 10.557 92.082 1.00 21.81 ATOM 113 CE LYS A 10 21.324 10.493 92.354 1.00 24.07 ATOM 114 NZ LYS A 10 21.586 9.786 93.645 1.00 27.32 ATOM 115 N SER A 11 19.565 12.010 86.332 1.00 19.00 ATOM 116 CA SER A 11 20.234 11.707 85.068 1.00 20.42 ATOM 117 C SER A 11 21.282 10.592 85.194 1.00 20.60 ATOM 118 O SER A 11 22.385 10.698 84.653 1.00 23.10 ATOM 119 CB SER A 11 20.856 12.967 84.458 1.00 23.82 ATOM 120 OG SER A 11 21.274 12.710 83.130 1.00 26.36 ATOM 121 N LEU A 12 20.919 9.535 85.927 1.00 18.69 ATOM 122 CA LEU A 12 21.703 8.306 85.987 1.00 19.35 ATOM 123 C LEU A 12 20.936 7.242 85.220 1.00 17.97 ATOM 124 O LEU A 12 19.713 7.241 85.229 1.00 16.56 ATOM 125 CB LEU A 12 21.932 7.877 87.443 1.00 19.67 ATOM 126 CG LEU A 12 22.803 8.781 88.323 1.00 21.98 ATOM 127 CD1 LEU A 12 22.966 8.151 89.704 1.00 23.47 ATOM 128 CD2 LEU A 12 24.162 9.049 87.701 1.00 25.29 ATOM 129 N GLU A 13 21.660 6.351 84.547 1.00 19.37 ATOM 130 CA GLU A 13 21.066 5.261 83.773 1.00 18.49 ATOM 131 C GLU A 13 21.273 3.965 84.514 1.00 18.14 ATOM 132 O GLU A 13 22.354 3.750 85.085 1.00 20.15 ATOM 133 CB GLU A 13 21.757 5.125 82.414 1.00 21.13 ATOM 134 CG GLU A 13 21.432 6.226 81.437 1.00 22.95 ATOM 135 CD GLU A 13 21.945 5.947 80.031 1.00 26.50 ATOM 136 OE1 GLU A 13 22.347 4.790 79.707 1.00 27.59 ATOM 137 OE2 GLU A 13 21.959 6.897 79.237 1.00 29.75 ATOM 138 N ASP A 14 20.265 3.088 84.492 1.00 16.44 ATOM 139 CA ASP A 14 20.447 1.740 85.030 1.00 17.13 ATOM 140 C ASP A 14 21.265 0.922 84.028 1.00 18.23 ATOM 141 O ASP A 14 21.453 1.326 82.885 1.00 17.98 ATOM 142 CB ASP A 14 19.120 1.074 85.482 1.00 16.49 ATOM 143 CG ASP A 14 18.194 0.679 84.339 1.00 15.33 ATOM 144 OD1 ASP A 14 18.616 -0.067 83.444 1.00 15.30 ATOM 145 OD2 ASP A 14 16.998 1.058 84.391 1.00 14.75 ATOM 146 N LYS A 14A 21.732 -0.230 84.463 1.00 20.10 ATOM 147 CA LYS A 14A 22.712 -1.000 83.686 1.00 22.46 ATOM 148 C LYS A 14A 22.167 -1.681 82.431 1.00 21.16 ATOM 149 O LYS A 14A 22.958 -2.115 81.618 1.00 23.20 ATOM 150 CB LYS A 14A 23.385 -2.050 84.570 1.00 26.08 ATOM 151 CG LYS A 14A 24.189 -1.438 85.697 1.00 29.02 ATOM 152 CD LYS A 14A 24.743 -2.508 86.612 1.00 33.87 ATOM 153 CE LYS A 14A 25.314 -1.893 87.874 1.00 37.19 ATOM 154 NZ LYS A 14A 25.825 -2.963 88.758 1.00 43.26 ATOM 155 N THR A 14B 20.849 -1.805 82.274 1.00 18.61 ATOM 156 CA THR A 14B 20.307 -2.468 81.075 1.00 18.29 ATOM 157 C THR A 14B 19.260 -1.679 80.302 1.00 16.85 ATOM 158 O THR A 14B 18.705 -2.221 79.335 1.00 17.31 ATOM 159 CB THR A 14B 19.714 -3.857 81.396 1.00 18.74 ATOM 160 OG1 THR A 14B 18.495 -3.696 82.131 1.00 17.97 ATOM 161 CG2 THR A 14B 20.705 -4.715 82.175 1.00 21.37 ATOM 162 N GLU A 14C 18.981 -0.430 80.682 1.00 15.86 ATOM 163 CA GLU A 14C 17.968 0.341 79.947 1.00 15.74 ATOM 164 C GLU A 14C 18.371 0.629 78.481 1.00 17.86 ATOM 165 O GLU A 14C 17.514 0.686 77.600 1.00 18.92 ATOM 166 CB GLU A 14C 17.585 1.617 80.688 1.00 15.00 ATOM 167 CG GLU A 14C 18.680 2.665 80.865 1.00 15.41 ATOM 168 CD GLU A 14C 18.134 3.922 81.508 1.00 14.95 ATOM 169 OE1 GLU A 14C 18.076 4.008 82.768 1.00 13.93 ATOM 170 OE2 GLU A 14C 17.733 4.810 80.734 1.00 16.10 ATOM 171 N ARG A 14D 19.674 0.777 78.227 1.00 19.65 ATOM 172 CA ARG A 14D 20.187 0.916 76.866 1.00 23.10 ATOM 173 C ARG A 14D 19.757 -0.237 75.939 1.00 23.74 ATOM 174 O ARG A 14D 19.418 0.003 74.784 1.00 26.09 ATOM 175 CB ARG A 14D 21.703 1.092 76.882 1.00 26.19 ATOM 176 CG ARG A 14D 22.278 1.463 75.534 1.00 31.48 ATOM 177 CD ARG A 14D 23.672 2.081 75.621 1.00 35.90 ATOM 178 NE ARG A 14D 23.679 3.321 76.416 1.00 35.37 ATOM 179 CZ ARG A 14D 23.664 4.572 75.939 1.00 38.60 ATOM 180 NH1 ARG A 14D 23.689 5.587 76.803 1.00 37.78 ATOM 181 NH2 ARG A 14D 23.638 4.840 74.631 1.00 43.40 ATOM 182 N GLU A 14E 19.731 -1.469 76.462 1.00 18.69 ATOM 183 CA GLU A 14E 19.212 -2.633 75.722 1.00 18.35 ATOM 184 C GLU A 14E 17.810 -2.352 75.202 1.00 17.02 ATOM 185 O GLU A 14E 17.501 -2.683 74.070 1.00 17.19 ATOM 186 CB GLU A 14E 19.207 -3.898 76.588 1.00 20.14 ATOM 187 CG GLU A 14E 18.850 -5.189 75.861 1.00 21.60 ATOM 188 CD GLU A 14E 18.665 -6.390 76.793 1.00 24.68 ATOM 189 OE1 GLU A 14E 18.169 -7.430 76.312 1.00 26.67 ATOM 190 OE2 GLU A 14E 18.998 -6.293 78.006 1.00 26.00 ATOM 191 N LEU A 14F 16.974 -1.715 76.022 1.00 16.60 ATOM 192 CA LEU A 14F 15.621 -1.335 75.587 1.00 16.39 ATOM 193 C LEU A 14F 15.660 -0.310 74.459 1.00 16.24 ATOM 194 O LEU A 14F 15.071 -0.524 73.400 1.00 16.81 ATOM 195 CB LEU A 14F 14.782 -0.780 76.745 1.00 17.23 ATOM 196 CG LEU A 14F 14.630 -1.630 78.000 1.00 18.96 ATOM 197 CD1 LEU A 14F 13.540 -1.039 78.885 1.00 20.96 ATOM 198 CD2 LEU A 14F 14.312 -3.069 77.642 1.00 20.00 ATOM 199 N LEU A 14G 16.367 0.789 74.696 1.00 16.61 ATOM 200 CA LEU A 14G 16.522 1.843 73.709 1.00 18.01 ATOM 201 C LEU A 14G 17.031 1.297 72.365 1.00 18.76 ATOM 202 O LEU A 14G 16.552 1.696 71.289 1.00 20.29 ATOM 203 CB LEU A 14G 17.474 2.923 74.226 1.00 19.72 ATOM 204 CG LEU A 14G 17.766 4.094 73.277 1.00 22.81 ATOM 205 CD1 LEU A 14G 16.471 4.787 72.857 1.00 24.07 ATOM 206 CD2 LEU A 14G 18.730 5.077 73.928 1.00 25.64 ATOM 207 N GLU A 14H 17.981 0.374 72.431 1.00 18.57 ATOM 208 CA GLU A 14H 18.586 -0.141 71.211 1.00 20.56 ATOM 209 C GLU A 14H 17.607 -0.980 70.389 1.00 21.09 ATOM 210 O GLU A 14H 17.714 -1.023 69.170 1.00 23.72 ATOM 211 CB GLU A 14H 19.866 -0.887 71.538 1.00 21.35 ATOM 212 CG GLU A 14H 20.962 0.072 71.968 1.00 22.84 ATOM 213 CD GLU A 14H 22.188 -0.620 72.508 1.00 24.25 ATOM 214 OE1 GLU A 14H 23.206 0.076 72.692 1.00 26.96 ATOM 215 OE2 GLU A 14H 22.145 -1.843 72.740 1.00 23.83 ATOM 216 N SER A 14I 16.631 -1.595 71.054 1.00 19.74 ATOM 217 CA SER A 14I 15.580 -2.363 70.377 1.00 21.29 ATOM 218 C SER A 14I 14.534 -1.484 69.691 1.00 22.58 ATOM 219 O SER A 14I 13.752 -1.982 68.898 1.00 25.02 ATOM 220 CB SER A 14I 14.877 -3.307 71.377 1.00 20.82 ATOM 221 OG SER A 14I 13.995 -2.606 72.252 1.00 19.59 ATOM 222 N TYR A 14J 14.500 -0.192 69.997 1.00 21.98 ATOM 223 CA TYR A 14J 13.475 0.677 69.447 1.00 24.27 ATOM 224 C TYR A 14J 13.941 1.233 68.099 1.00 28.00 ATOM 225 O TYR A 14J 14.272 2.414 67.990 1.00 29.48 ATOM 226 CB TYR A 14J 13.107 1.781 70.458 1.00 23.36 ATOM 227 CG TYR A 14J 12.669 1.297 71.832 1.00 21.21 ATOM 228 CD1 TYR A 14J 12.101 0.033 72.027 1.00 20.99 ATOM 229 CD2 TYR A 14J 12.785 2.129 72.949 1.00 20.74 ATOM 230 CE1 TYR A 14J 11.698 -0.394 73.284 1.00 20.47 ATOM 231 CE2 TYR A 14J 12.383 1.705 74.212 1.00 19.99 ATOM 232 CZ TYR A 14J 11.839 0.442 74.391 1.00 20.01 ATOM 233 OH TYR A 14J 11.424 0.016 75.671 1.00 20.50 ATOM 234 N ILE A 14K 13.907 0.341 67.097 1.00 30.62 ATOM 235 CA ILE A 14K 14.340 0.509 65.683 1.00 35.64 ATOM 236 C ILE A 14K 15.796 0.093 65.526 1.00 35.95 ATOM 237 O ILE A 14K 16.217 -0.929 66.077 1.00 33.96 ATOM 238 CB ILE A 14K 14.085 1.907 65.054 1.00 39.60 ATOM 239 CG1 ILE A 14K 12.596 2.273 65.134 1.00 40.73 ATOM 240 CG2 ILE A 14K 14.544 1.928 63.595 1.00 45.80 ATOM 241 CD1 ILE A 14K 12.258 3.691 64.704 1.00 45.10 TER