HEADER RIBOSOME 14-JAN-16 5HKV TITLE The crystal structure of the large ribosomal subunit of TITLE 2 Staphylococcus aureus in complex with lincomycin COMPND MOL_ID: 22; COMPND 2 MOLECULE: 50S ribosomal protein L28; COMPND 3 CHAIN: U; COMPND 4 MOL_ID: 1; COMPND 5 23s ribosomal RNA; COMPND 6 CHAIN: X; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.66 ANGSTORMS DBREF 5HKV U 1 62 UNP Q2FZ60 RL28_STAA8 1 62 DBREF 5HKV X 1 2923 GB 87201381 CP000253.1 4507 45366 SEQRES 1 U 42 THR GLY ASN ARG ARG SER HIS ALA LEU ASN SER THR LYS SEQRES 2 U 42 ARG ARG TRP ASN ALA ASN LEU GLN LYS VAL ARG ILE LEU SEQRES 3 U 42 VAL ASP GLY LYS PRO LYS LYS VAL TRP VAL SER ALA ARG SEQRES 4 U 42 ALA LEU LYS ATOM 1 N THR U 14 25.282 -28.431 -43.502 1.00189.85 ATOM 2 CA THR U 14 25.363 -29.855 -43.817 1.00189.70 ATOM 3 C THR U 14 26.752 -30.433 -43.550 1.00188.83 ATOM 4 O THR U 14 27.540 -29.864 -42.790 1.00188.16 ATOM 5 CB THR U 14 24.947 -30.147 -45.280 1.00190.61 ATOM 6 OG1 THR U 14 25.290 -31.497 -45.616 1.00190.55 ATOM 7 CG2 THR U 14 25.632 -29.186 -46.258 1.00190.83 ATOM 8 N GLY U 15 27.048 -31.565 -44.181 1.00214.30 ATOM 9 CA GLY U 15 28.329 -32.218 -44.002 1.00214.09 ATOM 10 C GLY U 15 28.483 -32.858 -42.635 1.00212.79 ATOM 11 O GLY U 15 29.585 -32.871 -42.077 1.00211.64 ATOM 12 N ASN U 16 27.383 -33.388 -42.099 1.00148.15 ATOM 13 CA ASN U 16 27.378 -33.960 -40.753 1.00147.37 ATOM 14 C ASN U 16 28.420 -35.054 -40.632 1.00148.21 ATOM 15 O ASN U 16 28.524 -35.922 -41.498 1.00150.31 ATOM 16 CB ASN U 16 25.999 -34.521 -40.410 1.00147.51 ATOM 17 N ARG U 17 29.169 -35.027 -39.536 1.00193.33 ATOM 18 CA ARG U 17 30.392 -35.811 -39.447 1.00194.32 ATOM 19 C ARG U 17 30.811 -36.070 -37.997 1.00192.84 ATOM 20 O ARG U 17 30.252 -35.476 -37.074 1.00190.92 ATOM 21 CB ARG U 17 31.516 -35.111 -40.220 1.00194.37 ATOM 22 N ARG U 18 31.784 -36.965 -37.805 1.00148.75 ATOM 23 CA ARG U 18 32.225 -37.350 -36.466 1.00149.16 ATOM 24 C ARG U 18 32.819 -36.156 -35.721 1.00148.24 ATOM 25 O ARG U 18 33.471 -35.296 -36.311 1.00147.87 ATOM 26 CB ARG U 18 33.214 -38.521 -36.515 1.00151.07 ATOM 27 N SER U 19 32.556 -36.094 -34.421 1.00157.41 ATOM 28 CA SER U 19 33.021 -34.984 -33.600 1.00156.36 ATOM 29 C SER U 19 33.590 -35.502 -32.293 1.00156.93 ATOM 30 O SER U 19 33.131 -35.116 -31.216 1.00156.37 ATOM 31 CB SER U 19 31.879 -34.010 -33.316 1.00154.97 ATOM 32 N HIS U 20 34.581 -36.389 -32.397 1.00181.37 ATOM 33 CA HIS U 20 35.243 -36.922 -31.210 1.00182.41 ATOM 34 C HIS U 20 36.018 -35.856 -30.432 1.00182.83 ATOM 35 O HIS U 20 36.566 -34.914 -31.012 1.00183.00 ATOM 36 CB HIS U 20 36.106 -38.189 -31.466 1.00184.54 ATOM 37 CG HIS U 20 36.576 -38.389 -32.878 1.00185.71 ATOM 38 ND1 HIS U 20 37.911 -38.512 -33.203 1.00187.76 ATOM 39 CD2 HIS U 20 35.896 -38.585 -34.037 1.00185.78 ATOM 40 CE1 HIS U 20 38.036 -38.722 -34.501 1.00188.93 ATOM 41 NE2 HIS U 20 36.825 -38.772 -35.028 1.00187.82 ATOM 42 N ALA U 21 36.030 -36.005 -29.111 1.00152.95 ATOM 43 CA ALA U 21 36.678 -35.043 -28.234 1.00153.21 ATOM 44 C ALA U 21 37.498 -35.724 -27.129 1.00155.81 ATOM 45 O ALA U 21 37.006 -36.602 -26.423 1.00157.11 ATOM 46 CB ALA U 21 35.635 -34.096 -27.633 1.00151.78 ATOM 47 N LEU U 22 38.762 -35.313 -27.025 1.00207.65 ATOM 48 CA LEU U 22 39.702 -35.717 -25.966 1.00210.66 ATOM 49 C LEU U 22 39.903 -37.226 -25.801 1.00211.24 ATOM 50 O LEU U 22 41.036 -37.710 -25.842 1.00213.72 ATOM 51 CB LEU U 22 39.354 -35.056 -24.624 1.00211.72 ATOM 52 N ASN U 23 38.813 -37.956 -25.587 1.00221.20 ATOM 53 CA ASN U 23 38.846 -39.413 -25.598 1.00221.83 ATOM 54 C ASN U 23 39.174 -39.907 -26.988 1.00221.75 ATOM 55 O ASN U 23 39.674 -41.025 -27.162 1.00223.50 ATOM 56 CB ASN U 23 37.468 -39.972 -25.224 1.00220.10 ATOM 57 N SER U 24 38.865 -39.050 -27.963 1.00160.91 ATOM 58 CA SER U 24 38.733 -39.412 -29.371 1.00160.29 ATOM 59 C SER U 24 37.681 -40.519 -29.576 1.00160.36 ATOM 60 O SER U 24 37.716 -41.232 -30.583 1.00160.84 ATOM 61 CB SER U 24 40.079 -39.783 -30.014 1.00162.54 ATOM 62 N THR U 25 36.756 -40.655 -28.618 1.00262.43 ATOM 63 CA THR U 25 35.587 -41.527 -28.769 1.00262.02 ATOM 64 C THR U 25 34.587 -40.966 -29.790 1.00260.28 ATOM 65 O THR U 25 34.229 -39.788 -29.734 1.00258.41 ATOM 66 CB THR U 25 34.875 -41.764 -27.413 1.00261.70 ATOM 67 N LYS U 26 34.079 -41.822 -30.675 1.00202.29 ATOM 68 CA LYS U 26 33.258 -41.358 -31.796 1.00201.54 ATOM 69 C LYS U 26 31.909 -40.763 -31.380 1.00199.67 ATOM 70 O LYS U 26 31.223 -41.288 -30.502 1.00199.85 ATOM 71 CB LYS U 26 33.053 -42.487 -32.814 1.00204.22 ATOM 72 N ARG U 27 31.534 -39.669 -32.031 1.00152.46 ATOM 73 CA ARG U 27 30.246 -39.034 -31.787 1.00150.95 ATOM 74 C ARG U 27 29.803 -38.331 -33.062 1.00149.37 ATOM 75 O ARG U 27 30.615 -37.689 -33.720 1.00148.84 ATOM 76 CB ARG U 27 30.361 -38.028 -30.645 1.00150.24 ATOM 77 N ARG U 28 28.522 -38.456 -33.411 1.00148.88 ATOM 78 CA ARG U 28 27.994 -37.872 -34.648 1.00147.82 ATOM 79 C ARG U 28 27.249 -36.574 -34.365 1.00146.18 ATOM 80 O ARG U 28 26.490 -36.507 -33.407 1.00145.97 ATOM 81 CB ARG U 28 27.070 -38.863 -35.362 1.00150.20 ATOM 82 N TRP U 29 27.444 -35.556 -35.204 1.00222.25 ATOM 83 CA TRP U 29 26.797 -34.260 -34.980 1.00221.02 ATOM 84 C TRP U 29 26.290 -33.611 -36.272 1.00221.60 ATOM 85 O TRP U 29 26.671 -34.019 -37.369 1.00222.79 ATOM 86 CB TRP U 29 27.710 -33.303 -34.185 1.00219.56 ATOM 87 CG TRP U 29 28.791 -32.572 -34.982 1.00219.24 ATOM 88 CD1 TRP U 29 29.168 -32.798 -36.283 1.00220.00 ATOM 89 CD2 TRP U 29 29.623 -31.495 -34.514 1.00218.69 ATOM 90 NE1 TRP U 29 30.174 -31.933 -36.648 1.00219.67 ATOM 91 CE2 TRP U 29 30.472 -31.124 -35.583 1.00218.94 ATOM 92 CE3 TRP U 29 29.735 -30.813 -33.297 1.00218.60 ATOM 93 CZ2 TRP U 29 31.414 -30.103 -35.470 1.00219.01 ATOM 94 CZ3 TRP U 29 30.673 -29.800 -33.189 1.00218.99 ATOM 95 CH2 TRP U 29 31.499 -29.456 -34.268 1.00219.13 ATOM 96 N ASN U 30 25.409 -32.621 -36.134 1.00184.80 ATOM 97 CA ASN U 30 24.845 -31.919 -37.291 1.00185.55 ATOM 98 C ASN U 30 25.800 -31.037 -38.122 1.00184.84 ATOM 99 O ASN U 30 25.652 -30.972 -39.337 1.00185.94 ATOM 100 CB ASN U 30 23.595 -31.120 -36.883 1.00185.89 ATOM 101 N ALA U 31 26.779 -30.389 -37.480 1.00164.85 ATOM 102 CA ALA U 31 27.702 -29.419 -38.135 1.00164.49 ATOM 103 C ALA U 31 27.043 -28.329 -39.003 1.00164.97 ATOM 104 O ALA U 31 27.521 -28.024 -40.103 1.00165.39 ATOM 105 CB ALA U 31 28.812 -30.132 -38.924 1.00165.02 ATOM 106 N ASN U 32 25.977 -27.728 -38.471 1.00204.33 ATOM 107 CA ASN U 32 25.108 -26.794 -39.199 1.00205.29 ATOM 108 C ASN U 32 25.772 -25.503 -39.686 1.00205.20 ATOM 109 O ASN U 32 26.705 -24.994 -39.067 1.00204.65 ATOM 110 CB ASN U 32 23.871 -26.454 -38.357 1.00206.13 ATOM 111 N LEU U 33 25.308 -25.008 -40.828 1.00236.97 ATOM 112 CA LEU U 33 25.763 -23.726 -41.357 1.00237.25 ATOM 113 C LEU U 33 25.108 -22.509 -40.683 1.00238.21 ATOM 114 O LEU U 33 23.982 -22.591 -40.190 1.00239.13 ATOM 115 CB LEU U 33 25.547 -23.672 -42.876 1.00238.25 ATOM 116 N GLN U 34 25.840 -21.393 -40.653 1.00156.69 ATOM 117 CA GLN U 34 25.295 -20.090 -40.268 1.00158.58 ATOM 118 C GLN U 34 24.368 -19.578 -41.345 1.00159.78 ATOM 119 O GLN U 34 24.657 -19.700 -42.532 1.00159.20 ATOM 120 CB GLN U 34 26.411 -19.069 -40.068 1.00159.07 ATOM 121 N LYS U 35 23.270 -18.963 -40.935 1.00170.45 ATOM 122 CA LYS U 35 22.372 -18.343 -41.896 1.00172.11 ATOM 123 C LYS U 35 21.565 -17.260 -41.214 1.00175.30 ATOM 124 O LYS U 35 21.404 -17.259 -39.994 1.00176.52 ATOM 125 CB LYS U 35 21.446 -19.377 -42.541 1.00172.05 ATOM 126 N VAL U 36 21.069 -16.324 -42.008 1.00154.35 ATOM 127 CA VAL U 36 20.175 -15.308 -41.468 1.00155.25 ATOM 128 C VAL U 36 19.315 -14.807 -42.633 1.00158.05 ATOM 129 O VAL U 36 19.671 -15.036 -43.784 1.00159.43 ATOM 130 CB VAL U 36 20.962 -14.170 -40.771 1.00155.66 ATOM 131 N ARG U 37 18.181 -14.159 -42.364 1.00207.89 ATOM 132 CA ARG U 37 17.281 -13.750 -43.458 1.00209.54 ATOM 133 C ARG U 37 17.131 -12.230 -43.649 1.00212.62 ATOM 134 O ARG U 37 16.627 -11.537 -42.764 1.00216.13 ATOM 135 CB ARG U 37 15.905 -14.398 -43.285 1.00211.63 ATOM 136 N ILE U 38 17.555 -11.728 -44.812 1.00194.63 ATOM 137 CA ILE U 38 17.448 -10.300 -45.137 1.00197.43 ATOM 138 C ILE U 38 17.548 -10.004 -46.644 1.00196.60 ATOM 139 O ILE U 38 18.146 -10.780 -47.389 1.00193.55 ATOM 140 CB ILE U 38 18.526 -9.469 -44.404 1.00197.60 ATOM 141 N LEU U 39 16.953 -8.882 -47.070 1.00228.80 ATOM 142 CA LEU U 39 17.036 -8.345 -48.449 1.00228.69 ATOM 143 C LEU U 39 16.756 -9.308 -49.625 1.00227.09 ATOM 144 O LEU U 39 15.610 -9.697 -49.846 1.00228.66 ATOM 145 CB LEU U 39 18.364 -7.607 -48.669 1.00227.28 ATOM 146 N VAL U 40 17.818 -9.631 -50.375 1.00184.51 ATOM 147 CA VAL U 40 17.838 -10.525 -51.560 1.00185.66 ATOM 148 C VAL U 40 17.681 -9.816 -52.910 1.00191.08 ATOM 149 O VAL U 40 16.860 -8.912 -53.057 1.00194.24 ATOM 150 CB VAL U 40 16.852 -11.725 -51.475 1.00183.67 ATOM 151 N ASP U 41 18.484 -10.238 -53.889 1.00202.33 ATOM 152 CA ASP U 41 18.456 -9.664 -55.239 1.00203.97 ATOM 153 C ASP U 41 17.422 -10.302 -56.181 1.00205.73 ATOM 154 O ASP U 41 17.278 -9.865 -57.320 1.00207.47 ATOM 155 CB ASP U 41 19.857 -9.683 -55.880 1.00202.22 ATOM 156 N GLY U 42 16.703 -11.322 -55.713 1.00262.25 ATOM 157 CA GLY U 42 15.706 -11.999 -56.538 1.00264.18 ATOM 158 C GLY U 42 14.434 -11.169 -56.637 1.00267.51 ATOM 159 O GLY U 42 14.356 -10.121 -56.000 1.00267.98 ATOM 160 N LYS U 43 13.447 -11.613 -57.421 1.00276.33 ATOM 161 CA LYS U 43 12.175 -10.896 -57.504 1.00279.81 ATOM 162 C LYS U 43 11.640 -10.910 -56.080 1.00279.93 ATOM 163 O LYS U 43 11.749 -11.928 -55.394 1.00278.39 ATOM 164 CB LYS U 43 11.212 -11.562 -58.483 1.00282.52 ATOM 165 N PRO U 44 11.065 -9.780 -55.627 1.00211.55 ATOM 166 CA PRO U 44 11.181 -9.438 -54.193 1.00210.79 ATOM 167 C PRO U 44 10.684 -10.487 -53.161 1.00210.45 ATOM 168 O PRO U 44 9.558 -10.972 -53.262 1.00212.94 ATOM 169 CB PRO U 44 10.379 -8.119 -54.073 1.00214.43 ATOM 170 CG PRO U 44 9.564 -8.020 -55.346 1.00217.25 ATOM 171 CD PRO U 44 10.314 -8.770 -56.393 1.00215.43 ATOM 172 N LYS U 45 11.540 -10.818 -52.186 1.00192.51 ATOM 173 CA LYS U 45 11.232 -11.736 -51.079 1.00187.82 ATOM 174 C LYS U 45 12.332 -11.697 -50.018 1.00183.92 ATOM 175 O LYS U 45 13.498 -11.503 -50.347 1.00184.03 ATOM 176 CB LYS U 45 11.075 -13.173 -51.585 1.00186.54 ATOM 177 N LYS U 46 11.969 -11.906 -48.753 1.00220.69 ATOM 178 CA LYS U 46 12.964 -12.035 -47.681 1.00218.38 ATOM 179 C LYS U 46 13.371 -13.493 -47.580 1.00215.40 ATOM 180 O LYS U 46 12.556 -14.339 -47.220 1.00216.51 ATOM 181 CB LYS U 46 12.406 -11.560 -46.333 1.00221.45 ATOM 182 N VAL U 47 14.628 -13.792 -47.887 1.00227.19 ATOM 183 CA VAL U 47 15.055 -15.184 -47.979 1.00224.61 ATOM 184 C VAL U 47 16.246 -15.522 -47.075 1.00221.38 ATOM 185 O VAL U 47 17.058 -14.651 -46.752 1.00220.62 ATOM 186 CB VAL U 47 15.380 -15.580 -49.434 1.00223.73 ATOM 187 N TRP U 48 16.317 -16.790 -46.658 1.00168.90 ATOM 188 CA TRP U 48 17.439 -17.305 -45.886 1.00165.91 ATOM 189 C TRP U 48 18.702 -17.177 -46.708 1.00164.08 ATOM 190 O TRP U 48 18.712 -17.478 -47.900 1.00164.96 ATOM 191 CB TRP U 48 17.228 -18.773 -45.541 1.00164.79 ATOM 192 CG TRP U 48 16.251 -19.011 -44.446 1.00166.18 ATOM 193 CD1 TRP U 48 15.013 -19.571 -44.562 1.00168.32 ATOM 194 CD2 TRP U 48 16.431 -18.711 -43.054 1.00165.97 ATOM 195 NE1 TRP U 48 14.408 -19.638 -43.329 1.00169.40 ATOM 196 CE2 TRP U 48 15.256 -19.116 -42.386 1.00168.04 ATOM 197 CE3 TRP U 48 17.469 -18.137 -42.308 1.00164.65 ATOM 198 CZ2 TRP U 48 15.089 -18.965 -41.006 1.00169.18 ATOM 199 CZ3 TRP U 48 17.300 -17.985 -40.940 1.00165.54 ATOM 200 CH2 TRP U 48 16.119 -18.398 -40.304 1.00167.95 ATOM 201 N VAL U 49 19.776 -16.747 -46.062 1.00216.94 ATOM 202 CA VAL U 49 21.015 -16.480 -46.767 1.00215.15 ATOM 203 C VAL U 49 22.212 -17.002 -45.997 1.00212.72 ATOM 204 O VAL U 49 22.299 -16.856 -44.752 1.00212.76 ATOM 205 CB VAL U 49 21.208 -14.973 -47.014 1.00216.48 ATOM 206 N SER U 50 23.107 -17.635 -46.755 1.00232.64 ATOM 207 CA SER U 50 24.406 -18.051 -46.263 1.00230.67 ATOM 208 C SER U 50 25.197 -16.795 -45.965 1.00230.98 ATOM 209 O SER U 50 25.157 -15.834 -46.734 1.00232.11 ATOM 210 CB SER U 50 25.129 -18.889 -47.319 1.00229.90 ATOM 211 N ALA U 51 25.904 -16.792 -44.842 1.00157.11 ATOM 212 CA ALA U 51 26.670 -15.620 -44.445 1.00158.00 ATOM 213 C ALA U 51 27.807 -15.314 -45.422 1.00160.03 ATOM 214 O ALA U 51 28.114 -14.143 -45.676 1.00162.24 ATOM 215 CB ALA U 51 27.215 -15.813 -43.047 1.00155.60 ATOM 216 N ARG U 52 28.406 -16.369 -45.979 1.00179.36 ATOM 217 CA ARG U 52 29.573 -16.219 -46.844 1.00179.58 ATOM 218 C ARG U 52 29.232 -15.425 -48.105 1.00181.21 ATOM 219 O ARG U 52 30.053 -14.652 -48.606 1.00182.20 ATOM 220 CB ARG U 52 30.154 -17.593 -47.210 1.00178.45 ATOM 221 N ALA U 53 28.016 -15.608 -48.608 1.00207.46 ATOM 222 CA ALA U 53 27.568 -14.863 -49.776 1.00208.92 ATOM 223 C ALA U 53 27.402 -13.393 -49.431 1.00210.24 ATOM 224 O ALA U 53 27.706 -12.512 -50.239 1.00211.51 ATOM 225 CB ALA U 53 26.263 -15.434 -50.297 1.00209.65 ATOM 226 N LEU U 54 26.946 -13.141 -48.208 1.00184.68 ATOM 227 CA LEU U 54 26.647 -11.787 -47.772 1.00186.69 ATOM 228 C LEU U 54 27.926 -11.087 -47.333 1.00186.94 ATOM 229 O LEU U 54 28.115 -10.794 -46.151 1.00187.57 ATOM 230 CB LEU U 54 25.612 -11.795 -46.646 1.00187.63 ATOM 231 N LYS U 55 28.795 -10.835 -48.308 1.00210.88 ATOM 232 CA LYS U 55 30.045 -10.119 -48.101 1.00211.58 ATOM 233 C LYS U 55 30.726 -9.922 -49.449 1.00212.24 ATOM 234 O LYS U 55 30.637 -10.783 -50.324 1.00211.35 ATOM 235 CB LYS U 55 30.970 -10.888 -47.155 1.00209.91 ATOM 236 C1 MPD U3002 31.971 -48.148 -33.952 1.00141.67 ATOM 237 C2 MPD U3002 32.989 -47.019 -34.054 1.00141.67 ATOM 238 O2 MPD U3002 32.269 -45.863 -34.522 1.00141.67 ATOM 239 CM MPD U3002 33.570 -46.689 -32.682 1.00141.67 ATOM 240 C3 MPD U3002 34.156 -47.399 -35.024 1.00141.67 ATOM 241 C4 MPD U3002 34.640 -46.234 -35.930 1.00141.67 ATOM 242 O4 MPD U3002 35.827 -45.617 -35.414 1.00141.67 ATOM 243 C5 MPD U3002 34.894 -46.709 -37.342 1.00141.67 TER