HEADER RIBOSOME 16-MAR-16 5IT7 TITLE Structure of the Kluyveromyces lactis 80S ribosome in complex with TITLE 2 the cricket paralysis virus IRES and eEF2 COMPND MOL_ID: 42; COMPND 2 MOLECULE: 60S ribosomal protein L41-A; COMPND 3 CHAIN: nn; EXPDTA ELECTRON MICROSCOPY DBREF 5IT7 n 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 nn 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 nn 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET n 1 181.745 240.539 220.004 1.00110.91 ATOM 2 CA MET n 1 181.757 239.661 221.219 1.00110.06 ATOM 3 C MET n 1 181.782 240.503 222.499 1.00109.10 ATOM 4 O MET n 1 182.027 241.711 222.446 1.00115.28 ATOM 5 CB MET n 1 182.952 238.698 221.180 1.00113.83 ATOM 6 CG MET n 1 184.294 239.339 221.488 1.00116.72 ATOM 7 SD MET n 1 185.710 238.297 221.084 1.00126.86 ATOM 8 CE MET n 1 185.776 237.218 222.510 1.00125.68 ATOM 9 N ARG n 2 181.515 239.853 223.633 1.00103.01 ATOM 10 CA ARG n 2 181.564 240.477 224.966 1.00 96.19 ATOM 11 C ARG n 2 182.853 241.267 225.138 1.00 97.71 ATOM 12 O ARG n 2 183.937 240.748 224.878 1.00103.33 ATOM 13 CB ARG n 2 181.476 239.398 226.047 1.00 94.19 ATOM 14 CG ARG n 2 181.862 239.830 227.462 1.00 94.08 ATOM 15 CD ARG n 2 180.673 239.932 228.394 1.00 93.82 ATOM 16 NE ARG n 2 180.475 238.738 229.233 1.00 91.21 ATOM 17 CZ ARG n 2 180.970 238.534 230.462 1.00 85.99 ATOM 18 NH1 ARG n 2 181.745 239.423 231.082 1.00 79.66 ATOM 19 NH2 ARG n 2 180.685 237.398 231.089 1.00 90.75 ATOM 20 N ALA n 3 182.726 242.507 225.601 1.00100.36 ATOM 21 CA ALA n 3 183.849 243.452 225.612 1.00103.14 ATOM 22 C ALA n 3 184.969 243.095 226.588 1.00 92.61 ATOM 23 O ALA n 3 186.136 243.359 226.296 1.00 98.36 ATOM 24 CB ALA n 3 183.355 244.871 225.872 1.00111.19 ATOM 25 N LYS n 4 184.629 242.518 227.736 1.00 79.91 ATOM 26 CA LYS n 4 185.658 242.031 228.639 1.00 77.34 ATOM 27 C LYS n 4 186.509 240.950 227.973 1.00 73.61 ATOM 28 O LYS n 4 187.726 240.945 228.133 1.00 79.00 ATOM 29 CB LYS n 4 185.059 241.501 229.937 1.00 80.25 ATOM 30 CG LYS n 4 186.081 241.112 231.011 1.00 79.42 ATOM 31 CD LYS n 4 185.782 239.770 231.662 1.00 75.90 ATOM 32 CE LYS n 4 184.896 239.887 232.883 1.00 72.37 ATOM 33 NZ LYS n 4 184.808 238.585 233.601 1.00 72.03 ATOM 34 N TRP n 5 185.893 240.045 227.226 1.00 67.41 ATOM 35 CA TRP n 5 186.677 239.025 226.534 1.00 65.15 ATOM 36 C TRP n 5 187.411 239.589 225.341 1.00 70.52 ATOM 37 O TRP n 5 188.529 239.174 225.069 1.00 69.98 ATOM 38 CB TRP n 5 185.820 237.856 226.090 1.00 62.44 ATOM 39 CG TRP n 5 184.983 237.256 227.156 1.00 57.28 ATOM 40 CD1 TRP n 5 183.703 236.815 227.023 1.00 57.16 ATOM 41 CD2 TRP n 5 185.354 237.004 228.509 1.00 53.70 ATOM 42 NE1 TRP n 5 183.250 236.307 228.203 1.00 57.62 ATOM 43 CE2 TRP n 5 184.246 236.413 229.136 1.00 55.34 ATOM 44 CE3 TRP n 5 186.512 237.227 229.260 1.00 52.86 ATOM 45 CZ2 TRP n 5 184.257 236.049 230.476 1.00 53.41 ATOM 46 CZ3 TRP n 5 186.525 236.855 230.580 1.00 51.69 ATOM 47 CH2 TRP n 5 185.403 236.278 231.178 1.00 52.11 ATOM 48 N ARG n 6 186.785 240.531 224.638 1.00 83.71 ATOM 49 CA ARG n 6 187.438 241.254 223.537 1.00 98.87 ATOM 50 C ARG n 6 188.669 242.014 224.054 1.00 97.06 ATOM 51 O ARG n 6 189.625 242.247 223.312 1.00 99.56 ATOM 52 CB ARG n 6 186.456 242.216 222.842 1.00115.23 ATOM 53 CG ARG n 6 186.358 242.017 221.340 1.00134.37 ATOM 54 CD ARG n 6 187.533 242.601 220.590 1.00153.80 ATOM 55 NE ARG n 6 187.480 244.055 220.576 1.00171.39 ATOM 56 CZ ARG n 6 188.287 244.839 219.866 1.00188.37 ATOM 57 NH1 ARG n 6 189.247 244.334 219.087 1.00195.46 ATOM 58 NH2 ARG n 6 188.130 246.152 219.941 1.00191.23 ATOM 59 N LYS n 7 188.618 242.398 225.328 1.00 90.08 ATOM 60 CA LYS n 7 189.796 242.836 226.073 1.00 84.86 ATOM 61 C LYS n 7 190.768 241.678 226.319 1.00 77.50 ATOM 62 O LYS n 7 191.951 241.810 226.033 1.00 82.02 ATOM 63 CB LYS n 7 189.369 243.518 227.387 1.00 90.09 ATOM 64 CG LYS n 7 190.352 243.460 228.553 1.00 92.74 ATOM 65 CD LYS n 7 189.795 244.187 229.774 1.00 90.45 ATOM 66 CE LYS n 7 190.824 245.144 230.341 1.00 90.62 ATOM 67 NZ LYS n 7 190.367 245.814 231.581 1.00 89.87 ATOM 68 N LYS n 8 190.274 240.563 226.852 1.00 73.16 ATOM 69 CA LYS n 8 191.106 239.370 227.105 1.00 74.90 ATOM 70 C LYS n 8 191.746 238.779 225.851 1.00 75.77 ATOM 71 O LYS n 8 192.865 238.264 225.894 1.00 77.38 ATOM 72 CB LYS n 8 190.280 238.277 227.785 1.00 79.15 ATOM 73 CG LYS n 8 191.066 237.043 228.237 1.00 79.32 ATOM 74 CD LYS n 8 190.206 236.097 229.066 1.00 78.95 ATOM 75 CE LYS n 8 190.023 236.580 230.498 1.00 81.05 ATOM 76 NZ LYS n 8 191.261 236.418 231.309 1.00 86.54 ATOM 77 N ARG n 9 191.015 238.837 224.750 1.00 79.00 ATOM 78 CA ARG n 9 191.496 238.420 223.442 1.00 83.08 ATOM 79 C ARG n 9 192.756 239.183 223.071 1.00 80.74 ATOM 80 O ARG n 9 193.781 238.580 222.753 1.00 83.23 ATOM 81 CB ARG n 9 190.402 238.705 222.425 1.00 91.78 ATOM 82 CG ARG n 9 190.714 238.374 220.985 1.00101.37 ATOM 83 CD ARG n 9 189.673 239.034 220.090 1.00110.10 ATOM 84 NE ARG n 9 189.315 238.185 218.966 1.00115.10 ATOM 85 CZ ARG n 9 188.594 237.068 219.055 1.00115.84 ATOM 86 NH1 ARG n 9 188.138 236.613 220.225 1.00114.29 ATOM 87 NH2 ARG n 9 188.343 236.387 217.956 1.00120.88 ATOM 88 N THR n 10 192.672 240.509 223.133 1.00 79.71 ATOM 89 CA THR n 10 193.795 241.375 222.780 1.00 82.78 ATOM 90 C THR n 10 194.896 241.442 223.853 1.00 83.15 ATOM 91 O THR n 10 195.928 242.072 223.631 1.00 85.97 ATOM 92 CB THR n 10 193.316 242.800 222.463 1.00 85.30 ATOM 93 OG1 THR n 10 192.630 243.335 223.601 1.00 88.55 ATOM 94 CG2 THR n 10 192.387 242.796 221.243 1.00 85.26 ATOM 95 N ARG n 11 194.673 240.827 225.011 1.00 86.55 ATOM 96 CA ARG n 11 195.743 240.593 225.976 1.00 91.68 ATOM 97 C ARG n 11 196.656 239.448 225.560 1.00103.19 ATOM 98 O ARG n 11 197.876 239.564 225.675 1.00118.46 ATOM 99 CB ARG n 11 195.185 240.315 227.364 1.00 92.96 ATOM 100 CG ARG n 11 194.673 241.560 228.058 1.00 97.05 ATOM 101 CD ARG n 11 195.103 241.575 229.505 1.00104.81 ATOM 102 NE ARG n 11 194.991 242.916 230.084 1.00113.08 ATOM 103 CZ ARG n 11 194.123 243.296 231.024 1.00116.93 ATOM 104 NH1 ARG n 11 193.218 242.451 231.525 1.00123.23 ATOM 105 NH2 ARG n 11 194.157 244.555 231.460 1.00111.61 ATOM 106 N ARG n 12 196.083 238.343 225.096 1.00106.46 ATOM 107 CA ARG n 12 196.896 237.253 224.558 1.00114.67 ATOM 108 C ARG n 12 197.644 237.699 223.308 1.00110.94 ATOM 109 O ARG n 12 198.856 237.502 223.212 1.00106.64 ATOM 110 CB ARG n 12 196.035 236.049 224.218 1.00135.78 ATOM 111 CG ARG n 12 195.446 235.358 225.431 1.00154.27 ATOM 112 CD ARG n 12 194.304 234.440 225.033 1.00174.59 ATOM 113 NE ARG n 12 193.459 234.126 226.184 1.00196.10 ATOM 114 CZ ARG n 12 192.176 233.759 226.127 1.00218.23 ATOM 115 NH1 ARG n 12 191.530 233.628 224.963 1.00228.63 ATOM 116 NH2 ARG n 12 191.525 233.497 227.259 1.00221.55 ATOM 117 N LEU n 13 196.909 238.309 222.373 1.00111.44 ATOM 118 CA LEU n 13 197.472 238.846 221.121 1.00114.57 ATOM 119 C LEU n 13 198.717 239.716 221.372 1.00113.33 ATOM 120 O LEU n 13 199.674 239.665 220.597 1.00116.03 ATOM 121 CB LEU n 13 196.419 239.650 220.338 1.00126.45 ATOM 122 CG LEU n 13 196.390 239.520 218.803 1.00151.91 ATOM 123 CD1 LEU n 13 195.484 240.591 218.203 1.00159.86 ATOM 124 CD2 LEU n 13 197.767 239.585 218.145 1.00161.29 ATOM 125 N LYS n 14 198.700 240.501 222.450 1.00111.28 ATOM 126 CA LYS n 14 199.897 241.217 222.911 1.00107.18 ATOM 127 C LYS n 14 200.982 240.270 223.409 1.00111.81 ATOM 128 O LYS n 14 202.140 240.412 223.017 1.00124.66 ATOM 129 CB LYS n 14 199.575 242.210 224.022 1.00104.77 ATOM 130 CG LYS n 14 199.095 243.556 223.529 1.00110.86 ATOM 131 CD LYS n 14 199.111 244.570 224.662 1.00125.14 ATOM 132 CE LYS n 14 200.496 245.155 224.898 1.00133.74 ATOM 133 NZ LYS n 14 200.444 246.242 225.915 1.00142.59 ATOM 134 N ARG n 15 200.622 239.324 224.276 1.00108.92 ATOM 135 CA ARG n 15 201.610 238.375 224.822 1.00112.61 ATOM 136 C ARG n 15 202.222 237.430 223.782 1.00107.91 ATOM 137 O ARG n 15 203.336 236.944 223.980 1.00110.55 ATOM 138 CB ARG n 15 201.052 237.562 225.995 1.00122.36 ATOM 139 CG ARG n 15 201.134 238.264 227.347 1.00127.88 ATOM 140 CD ARG n 15 201.185 237.277 228.508 1.00134.73 ATOM 141 NE ARG n 15 200.408 236.059 228.266 1.00150.53 ATOM 142 CZ ARG n 15 199.073 235.972 228.255 1.00168.08 ATOM 143 NH1 ARG n 15 198.300 237.035 228.473 1.00167.27 ATOM 144 NH2 ARG n 15 198.496 234.795 228.016 1.00180.73 ATOM 145 N LYS n 16 201.504 237.157 222.697 1.00105.07 ATOM 146 CA LYS n 16 202.124 236.534 221.529 1.00105.48 ATOM 147 C LYS n 16 203.028 237.541 220.826 1.00102.39 ATOM 148 O LYS n 16 204.162 237.213 220.491 1.00110.24 ATOM 149 CB LYS n 16 201.090 235.969 220.554 1.00115.61 ATOM 150 CG LYS n 16 201.042 234.447 220.523 1.00125.17 ATOM 151 CD LYS n 16 199.940 233.949 219.595 1.00137.68 ATOM 152 CE LYS n 16 200.289 234.107 218.118 1.00145.15 ATOM 153 NZ LYS n 16 199.117 234.580 217.329 1.00148.64 ATOM 154 N ARG n 17 202.535 238.759 220.611 1.00101.73 ATOM 155 CA ARG n 17 203.352 239.823 220.013 1.00106.03 ATOM 156 C ARG n 17 204.663 240.092 220.763 1.00109.80 ATOM 157 O ARG n 17 205.668 240.421 220.134 1.00120.29 ATOM 158 CB ARG n 17 202.560 241.133 219.843 1.00111.44 ATOM 159 CG ARG n 17 201.841 241.254 218.501 1.00121.27 ATOM 160 CD ARG n 17 201.650 242.698 218.051 1.00129.03 ATOM 161 NE ARG n 17 200.351 243.249 218.440 1.00136.81 ATOM 162 CZ ARG n 17 199.204 243.096 217.768 1.00148.01 ATOM 163 NH1 ARG n 17 199.137 242.377 216.640 1.00149.57 ATOM 164 NH2 ARG n 17 198.095 243.664 218.241 1.00151.57 ATOM 165 N ARG n 18 204.654 239.947 222.087 1.00112.50 ATOM 166 CA ARG n 18 205.869 240.118 222.895 1.00119.87 ATOM 167 C ARG n 18 206.915 239.022 222.662 1.00123.21 ATOM 168 O ARG n 18 208.111 239.308 222.649 1.00128.65 ATOM 169 CB ARG n 18 205.540 240.222 224.390 1.00128.76 ATOM 170 CG ARG n 18 205.205 241.637 224.856 1.00137.79 ATOM 171 CD ARG n 18 205.434 241.826 226.348 1.00150.69 ATOM 172 NE ARG n 18 206.818 241.529 226.736 1.00172.79 ATOM 173 CZ ARG n 18 207.328 241.691 227.959 1.00199.07 ATOM 174 NH1 ARG n 18 208.602 241.370 228.188 1.00205.39 ATOM 175 NH2 ARG n 18 206.594 242.185 228.955 1.00203.40 ATOM 176 N LYS n 19 206.472 237.780 222.490 1.00134.26 ATOM 177 CA LYS n 19 207.385 236.685 222.127 1.00151.63 ATOM 178 C LYS n 19 207.975 236.825 220.723 1.00159.31 ATOM 179 O LYS n 19 209.102 236.387 220.486 1.00174.29 ATOM 180 CB LYS n 19 206.706 235.313 222.246 1.00163.69 ATOM 181 CG LYS n 19 207.016 234.577 223.536 1.00174.40 ATOM 182 CD LYS n 19 206.479 235.313 224.753 1.00183.49 ATOM 183 CE LYS n 19 206.701 234.511 226.026 1.00194.38 ATOM 184 NZ LYS n 19 205.975 233.208 226.026 1.00199.62 ATOM 185 N VAL n 20 207.215 237.411 219.801 1.00158.81 ATOM 186 CA VAL n 20 207.660 237.555 218.418 1.00165.79 ATOM 187 C VAL n 20 208.790 238.583 218.302 1.00170.89 ATOM 188 O VAL n 20 209.823 238.294 217.692 1.00183.08 ATOM 189 CB VAL n 20 206.480 237.891 217.473 1.00176.33 ATOM 190 CG1 VAL n 20 206.963 238.249 216.070 1.00191.46 ATOM 191 CG2 VAL n 20 205.525 236.708 217.397 1.00176.69 ATOM 192 N ARG n 21 208.607 239.764 218.889 1.00169.41 ATOM 193 CA ARG n 21 209.618 240.826 218.798 1.00176.71 ATOM 194 C ARG n 21 210.842 240.558 219.685 1.00179.40 ATOM 195 O ARG n 21 211.925 241.078 219.410 1.00186.64 ATOM 196 CB ARG n 21 209.006 242.200 219.109 1.00186.50 ATOM 197 CG ARG n 21 209.772 243.368 218.491 1.00193.96 ATOM 198 CD ARG n 21 208.925 244.626 218.335 1.00197.21 ATOM 199 NE ARG n 21 208.980 245.498 219.510 1.00206.35 ATOM 200 CZ ARG n 21 209.960 246.364 219.795 1.00216.58 ATOM 201 NH1 ARG n 21 211.026 246.504 219.002 1.00220.09 ATOM 202 NH2 ARG n 21 209.878 247.102 220.902 1.00222.94 ATOM 203 N ALA n 22 210.670 239.751 220.734 1.00182.14 ATOM 204 CA ALA n 22 211.788 239.303 221.580 1.00190.72 ATOM 205 C ALA n 22 212.675 238.230 220.923 1.00197.75 ATOM 206 O ALA n 22 213.815 238.029 221.351 1.00193.07 ATOM 207 CB ALA n 22 211.266 238.796 222.916 1.00192.81 ATOM 208 N ARG n 23 212.154 237.544 219.902 1.00209.78 ATOM 209 CA ARG n 23 212.913 236.518 219.168 1.00223.70 ATOM 210 C ARG n 23 214.023 237.112 218.281 1.00240.46 ATOM 211 O ARG n 23 214.941 236.391 217.882 1.00243.83 ATOM 212 CB ARG n 23 211.965 235.635 218.335 1.00225.67 ATOM 213 CG ARG n 23 212.536 234.271 217.947 1.00229.22 ATOM 214 CD ARG n 23 211.481 233.167 217.935 1.00226.33 ATOM 215 NE ARG n 23 210.571 233.254 216.787 1.00228.02 ATOM 216 CZ ARG n 23 210.764 232.693 215.588 1.00228.49 ATOM 217 NH1 ARG n 23 211.856 231.976 215.311 1.00225.04 ATOM 218 NH2 ARG n 23 209.843 232.856 214.638 1.00232.11 ATOM 219 N SER n 24 213.927 238.410 217.974 1.00263.39 ATOM 220 CA SER n 24 214.998 239.162 217.307 1.00283.00 ATOM 221 C SER n 24 215.593 240.225 218.251 1.00297.31 ATOM 222 O SER n 24 215.794 241.379 217.857 1.00293.61 ATOM 223 CB SER n 24 214.458 239.814 216.029 1.00287.11 ATOM 224 OG SER n 24 213.840 238.855 215.188 1.00286.05 ATOM 225 N LYS n 25 215.881 239.811 219.489 1.00317.00 ATOM 226 CA LYS n 25 216.441 240.677 220.543 1.00329.23 ATOM 227 C LYS n 25 215.615 241.943 220.787 1.00326.23 ATOM 228 O LYS n 25 215.633 242.510 221.880 1.00321.36 ATOM 229 CB LYS n 25 217.900 241.048 220.237 1.00337.20 ATOM 230 CG LYS n 25 218.847 239.865 220.058 1.00341.81 ATOM 231 CD LYS n 25 219.086 239.103 221.356 1.00341.79 ATOM 232 CE LYS n 25 220.068 237.960 221.152 1.00341.80 ATOM 233 NZ LYS n 25 220.300 237.176 222.397 1.00340.37 TER