HEADER VIRAL PROTEIN/IMMUNE SYSTEM/INHIBITOR 20-JUN-16 5KJR TITLE Crystal structure of the ADCC-potent antibody N60-i3 Fab in complex TITLE 2 with HIV-1 Clade A/E gp120 W69A/S115W mutant and M48U1. COMPND MOL_ID: 2; COMPND 2 MOLECULE: M48U1 CD4 MIMETIC PEPTIDE; COMPND 3 CHAIN: N; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.98 ANGSTORMS DBREF 5KJR N 1 28 PDB 5KJR 5KJR 1 28 SEQRES 1 N 28 MPT ASN LEU HIS PHE CYS GLN LEU ARG CYS LYS SER LEU SEQRES 2 N 28 GLY LEU LEU GLY ARG CYS ALA DPR THR U2X CYS ALA CYS SEQRES 3 N 28 VAL NH2 ATOM 1 CA MPT N 1 24.560 26.205 55.882 1.00 53.01 ATOM 2 C MPT N 1 25.796 27.103 55.870 1.00 52.67 ATOM 3 O MPT N 1 26.891 26.470 56.004 1.00 52.11 ATOM 4 CB MPT N 1 23.733 26.421 57.141 1.00 53.46 ATOM 5 SG MPT N 1 24.796 26.652 58.583 1.00 57.23 ATOM 6 N ASN N 2 25.741 28.386 55.713 1.00 51.47 ATOM 7 CA ASN N 2 27.016 29.153 55.796 1.00 51.35 ATOM 8 C ASN N 2 27.362 29.305 57.268 1.00 52.88 ATOM 9 O ASN N 2 26.827 30.176 57.943 1.00 54.84 ATOM 10 CB ASN N 2 26.883 30.510 55.109 1.00 49.42 ATOM 11 CG ASN N 2 28.204 31.244 55.016 1.00 48.75 ATOM 12 OD1 ASN N 2 29.055 31.177 55.923 1.00 47.45 ATOM 13 ND2 ASN N 2 28.388 31.954 53.911 1.00 49.08 ATOM 14 N LEU N 3 28.250 28.441 57.752 1.00 53.07 ATOM 15 CA LEU N 3 28.580 28.375 59.176 1.00 52.36 ATOM 16 C LEU N 3 29.037 29.709 59.754 1.00 52.09 ATOM 17 O LEU N 3 28.335 30.286 60.565 1.00 49.49 ATOM 18 CB LEU N 3 29.652 27.315 59.418 1.00 53.24 ATOM 19 CG LEU N 3 30.136 27.112 60.854 1.00 54.50 ATOM 20 CD1 LEU N 3 28.971 26.825 61.797 1.00 54.07 ATOM 21 CD2 LEU N 3 31.160 25.982 60.882 1.00 55.25 ATOM 22 N HIS N 4 30.193 30.208 59.321 1.00 54.05 ATOM 23 CA HIS N 4 30.769 31.428 59.900 1.00 54.74 ATOM 24 C HIS N 4 29.750 32.561 59.990 1.00 52.39 ATOM 25 O HIS N 4 29.713 33.288 60.988 1.00 54.64 ATOM 26 CB HIS N 4 32.017 31.873 59.137 1.00 58.63 ATOM 27 CG HIS N 4 33.253 31.115 59.518 1.00 65.62 ATOM 28 ND1 HIS N 4 33.556 29.870 59.003 1.00 71.63 ATOM 29 CD2 HIS N 4 34.262 31.426 60.365 1.00 68.08 ATOM 30 CE1 HIS N 4 34.699 29.448 59.516 1.00 71.22 ATOM 31 NE2 HIS N 4 35.150 30.376 60.343 1.00 70.81 ATOM 32 N PHE N 5 28.902 32.687 58.973 1.00 50.40 ATOM 33 CA PHE N 5 27.780 33.636 59.027 1.00 50.50 ATOM 34 C PHE N 5 26.813 33.279 60.167 1.00 49.99 ATOM 35 O PHE N 5 26.475 34.128 60.993 1.00 52.74 ATOM 36 CB PHE N 5 27.041 33.716 57.676 1.00 48.62 ATOM 37 CG PHE N 5 26.029 34.822 57.608 1.00 46.72 ATOM 38 CD1 PHE N 5 26.435 36.145 57.480 1.00 46.32 ATOM 39 CD2 PHE N 5 24.670 34.543 57.702 1.00 46.25 ATOM 40 CE1 PHE N 5 25.501 37.168 57.439 1.00 46.88 ATOM 41 CE2 PHE N 5 23.729 35.562 57.657 1.00 46.30 ATOM 42 CZ PHE N 5 24.144 36.877 57.524 1.00 46.57 ATOM 43 N CYS N 6 26.398 32.018 60.196 1.00 48.18 ATOM 44 CA CYS N 6 25.512 31.477 61.226 1.00 46.25 ATOM 45 C CYS N 6 26.063 31.639 62.657 1.00 46.67 ATOM 46 O CYS N 6 25.328 31.995 63.578 1.00 46.26 ATOM 47 CB CYS N 6 25.274 30.004 60.916 1.00 45.33 ATOM 48 SG CYS N 6 24.237 29.152 62.085 1.00 44.64 ATOM 49 N GLN N 7 27.357 31.396 62.836 1.00 46.37 ATOM 50 CA GLN N 7 28.023 31.663 64.119 1.00 45.70 ATOM 51 C GLN N 7 27.887 33.130 64.528 1.00 45.31 ATOM 52 O GLN N 7 27.388 33.422 65.618 1.00 44.74 ATOM 53 CB GLN N 7 29.509 31.307 64.059 1.00 44.73 ATOM 54 CG GLN N 7 29.805 29.825 63.965 1.00 42.89 ATOM 55 CD GLN N 7 31.266 29.542 63.691 1.00 43.54 ATOM 56 OE1 GLN N 7 32.042 30.420 63.285 1.00 43.49 ATOM 57 NE2 GLN N 7 31.653 28.301 63.909 1.00 44.93 ATOM 58 N LEU N 8 28.340 34.031 63.652 1.00 44.88 ATOM 59 CA LEU N 8 28.182 35.477 63.859 1.00 45.99 ATOM 60 C LEU N 8 26.725 35.826 64.142 1.00 46.12 ATOM 61 O LEU N 8 26.420 36.641 65.001 1.00 51.31 ATOM 62 CB LEU N 8 28.679 36.290 62.642 1.00 46.54 ATOM 63 CG LEU N 8 28.219 37.771 62.489 1.00 46.53 ATOM 64 CD1 LEU N 8 29.203 38.611 61.675 1.00 47.25 ATOM 65 CD2 LEU N 8 26.820 37.916 61.886 1.00 46.10 ATOM 66 N ARG N 9 25.827 35.224 63.391 1.00 44.09 ATOM 67 CA ARG N 9 24.421 35.570 63.460 1.00 42.89 ATOM 68 C ARG N 9 23.780 35.252 64.806 1.00 40.83 ATOM 69 O ARG N 9 22.975 36.037 65.298 1.00 41.44 ATOM 70 CB ARG N 9 23.707 34.830 62.345 1.00 43.68 ATOM 71 CG ARG N 9 22.222 35.069 62.210 1.00 42.82 ATOM 72 CD ARG N 9 21.865 34.507 60.869 1.00 42.11 ATOM 73 NE ARG N 9 20.493 34.069 60.782 1.00 41.40 ATOM 74 CZ ARG N 9 20.036 33.307 59.792 1.00 40.20 ATOM 75 NH1 ARG N 9 20.840 32.890 58.804 1.00 38.90 ATOM 76 NH2 ARG N 9 18.762 32.962 59.789 1.00 39.74 ATOM 77 N CYS N 10 24.133 34.101 65.378 1.00 39.37 ATOM 78 CA CYS N 10 23.580 33.651 66.668 1.00 39.29 ATOM 79 C CYS N 10 24.240 34.365 67.859 1.00 38.46 ATOM 80 O CYS N 10 23.612 34.586 68.911 1.00 36.54 ATOM 81 CB CYS N 10 23.766 32.140 66.821 1.00 39.50 ATOM 82 SG CYS N 10 22.867 31.151 65.621 1.00 38.39 ATOM 83 N LYS N 11 25.523 34.680 67.674 1.00 36.82 ATOM 84 CA LYS N 11 26.316 35.510 68.576 1.00 34.66 ATOM 85 C LYS N 11 25.606 36.826 68.983 1.00 35.41 ATOM 86 O LYS N 11 25.815 37.319 70.084 1.00 33.77 ATOM 87 CB LYS N 11 27.665 35.744 67.899 1.00 32.58 ATOM 88 CG LYS N 11 28.674 36.582 68.623 1.00 32.16 ATOM 89 CD LYS N 11 30.033 36.399 67.956 1.00 31.84 ATOM 90 CE LYS N 11 31.035 37.461 68.383 1.00 31.76 ATOM 91 NZ LYS N 11 32.343 36.859 68.768 1.00 31.47 ATOM 92 N SER N 12 24.740 37.361 68.117 1.00 36.81 ATOM 93 CA SER N 12 23.846 38.484 68.466 1.00 37.05 ATOM 94 C SER N 12 23.146 38.314 69.822 1.00 37.50 ATOM 95 O SER N 12 23.148 39.238 70.642 1.00 36.77 ATOM 96 CB SER N 12 22.790 38.674 67.370 1.00 36.27 ATOM 97 OG SER N 12 21.745 39.535 67.794 1.00 36.94 ATOM 98 N LEU N 13 22.552 37.136 70.022 1.00 38.47 ATOM 99 CA LEU N 13 21.843 36.771 71.256 1.00 39.93 ATOM 100 C LEU N 13 22.714 35.984 72.247 1.00 41.24 ATOM 101 O LEU N 13 22.233 35.561 73.303 1.00 41.55 ATOM 102 CB LEU N 13 20.616 35.926 70.916 1.00 39.86 ATOM 103 CG LEU N 13 19.469 36.662 70.236 1.00 40.00 ATOM 104 CD1 LEU N 13 18.571 35.678 69.497 1.00 40.08 ATOM 105 CD2 LEU N 13 18.669 37.455 71.254 1.00 40.06 ATOM 106 N GLY N 14 23.981 35.769 71.896 1.00 42.01 ATOM 107 CA GLY N 14 24.946 35.122 72.774 1.00 41.52 ATOM 108 C GLY N 14 24.937 33.624 72.706 1.00 41.90 ATOM 109 O GLY N 14 25.336 32.972 73.653 1.00 42.90 ATOM 110 N LEU N 15 24.480 33.086 71.583 1.00 42.90 ATOM 111 CA LEU N 15 24.364 31.659 71.381 1.00 43.07 ATOM 112 C LEU N 15 25.468 31.279 70.412 1.00 44.73 ATOM 113 O LEU N 15 25.972 32.142 69.687 1.00 45.01 ATOM 114 CB LEU N 15 22.978 31.336 70.811 1.00 42.02 ATOM 115 CG LEU N 15 21.768 31.842 71.610 1.00 41.05 ATOM 116 CD1 LEU N 15 20.450 31.541 70.918 1.00 39.94 ATOM 117 CD2 LEU N 15 21.765 31.252 73.011 1.00 42.04 ATOM 118 N LEU N 16 25.879 30.011 70.443 1.00 47.25 ATOM 119 CA LEU N 16 26.778 29.443 69.430 1.00 47.93 ATOM 120 C LEU N 16 25.969 29.017 68.210 1.00 46.28 ATOM 121 O LEU N 16 24.745 28.860 68.274 1.00 44.50 ATOM 122 CB LEU N 16 27.604 28.263 69.975 1.00 49.62 ATOM 123 CG LEU N 16 28.571 28.584 71.139 1.00 51.20 ATOM 124 CD1 LEU N 16 28.010 28.121 72.485 1.00 51.45 ATOM 125 CD2 LEU N 16 29.970 28.005 70.934 1.00 50.63 ATOM 126 N GLY N 17 26.673 28.860 67.095 1.00 44.25 ATOM 127 CA GLY N 17 26.060 28.547 65.815 1.00 43.06 ATOM 128 C GLY N 17 26.445 27.164 65.346 1.00 42.53 ATOM 129 O GLY N 17 27.598 26.754 65.461 1.00 39.68 ATOM 130 N ARG N 18 25.464 26.445 64.821 1.00 43.99 ATOM 131 CA ARG N 18 25.684 25.142 64.218 1.00 45.27 ATOM 132 C ARG N 18 24.796 25.022 63.011 1.00 44.47 ATOM 133 O ARG N 18 23.662 25.494 63.017 1.00 43.32 ATOM 134 CB ARG N 18 25.308 24.024 65.187 1.00 47.20 ATOM 135 CG ARG N 18 26.348 23.683 66.248 1.00 49.10 ATOM 136 CD ARG N 18 26.114 22.285 66.832 1.00 50.07 ATOM 137 NE ARG N 18 24.686 22.052 67.093 1.00 50.95 ATOM 138 CZ ARG N 18 24.143 21.643 68.243 1.00 51.78 ATOM 139 NH1 ARG N 18 24.882 21.330 69.315 1.00 52.48 ATOM 140 NH2 ARG N 18 22.815 21.517 68.309 1.00 50.50 ATOM 141 N CYS N 19 25.298 24.362 61.985 1.00 45.71 ATOM 142 CA CYS N 19 24.467 24.041 60.839 1.00 48.63 ATOM 143 C CYS N 19 23.549 22.872 61.168 1.00 45.76 ATOM 144 O CYS N 19 23.955 21.938 61.859 1.00 46.89 ATOM 145 CB CYS N 19 25.337 23.718 59.633 1.00 52.70 ATOM 146 SG CYS N 19 26.172 25.191 59.008 1.00 60.44 ATOM 147 N ALA N 20 22.308 22.953 60.693 1.00 42.40 ATOM 148 CA ALA N 20 21.364 21.838 60.707 1.00 40.76 ATOM 149 C ALA N 20 21.124 21.472 59.246 1.00 40.91 ATOM 150 O ALA N 20 20.033 21.700 58.707 1.00 36.81 ATOM 151 CB ALA N 20 20.068 22.238 61.392 1.00 39.91 ATOM 152 N DPR N 21 22.158 20.918 58.587 1.00 42.84 ATOM 153 CA DPR N 21 22.091 20.827 57.139 1.00 44.76 ATOM 154 CB DPR N 21 23.140 19.777 56.764 1.00 43.99 ATOM 155 CG DPR N 21 23.954 19.427 58.000 1.00 42.75 ATOM 156 CD DPR N 21 23.334 20.235 59.117 1.00 43.25 ATOM 157 C DPR N 21 22.311 22.199 56.505 1.00 47.13 ATOM 158 O DPR N 21 23.297 22.890 56.810 1.00 51.02 ATOM 159 N THR N 22 21.378 22.621 55.651 1.00 45.85 ATOM 160 CA THR N 22 21.462 23.919 54.971 1.00 43.69 ATOM 161 C THR N 22 20.927 25.063 55.829 1.00 42.32 ATOM 162 O THR N 22 20.734 26.174 55.329 1.00 41.37 ATOM 163 CB THR N 22 20.632 23.896 53.691 1.00 43.17 ATOM 164 OG1 THR N 22 19.272 23.591 54.029 1.00 41.09 ATOM 165 CG2 THR N 22 21.188 22.855 52.741 1.00 44.23 ATOM 166 N U2X N 23 20.318 25.042 56.936 1.00 39.12 ATOM 167 C U2X N 23 20.782 26.196 58.981 1.00 39.07 ATOM 168 O U2X N 23 21.150 25.222 59.653 1.00 37.75 ATOM 169 CA U2X N 23 19.697 25.853 57.929 1.00 38.00 ATOM 170 CB U2X N 23 18.524 25.174 58.588 1.00 37.49 ATOM 171 CG U2X N 23 17.445 24.675 57.650 1.00 36.29 ATOM 172 CD1 U2X N 23 16.915 25.484 56.654 1.00 36.40 ATOM 173 CD2 U2X N 23 16.975 23.365 57.795 1.00 36.00 ATOM 174 CE1 U2X N 23 15.902 24.970 55.801 1.00 36.47 ATOM 175 CE2 U2X N 23 15.972 22.858 56.943 1.00 35.79 ATOM 176 CZ U2X N 23 15.423 23.657 55.947 1.00 35.08 ATOM 177 OH U2X N 23 14.391 23.140 55.063 1.00 34.28 ATOM 178 C7 U2X N 23 13.280 22.469 55.679 1.00 32.82 ATOM 179 C1 U2X N 23 10.023 21.222 54.035 1.00 33.96 ATOM 180 C2 U2X N 23 11.263 21.249 54.907 1.00 33.84 ATOM 181 C3 U2X N 23 12.153 22.440 54.632 1.00 32.85 ATOM 182 C4 U2X N 23 11.406 23.742 54.679 1.00 32.60 ATOM 183 C5 U2X N 23 10.170 23.714 53.820 1.00 33.11 ATOM 184 C6 U2X N 23 9.273 22.524 54.089 1.00 33.62 ATOM 185 N CYS N 24 20.507 27.285 59.660 1.00 43.15 ATOM 186 CA CYS N 24 21.352 27.822 60.768 1.00 43.12 ATOM 187 C CYS N 24 20.627 27.632 62.094 1.00 41.53 ATOM 188 O CYS N 24 19.465 28.005 62.218 1.00 41.62 ATOM 189 CB CYS N 24 21.671 29.297 60.519 1.00 42.61 ATOM 190 SG CYS N 24 22.485 30.128 61.890 1.00 43.41 ATOM 191 N ALA N 25 21.311 27.042 63.066 1.00 39.83 ATOM 192 CA ALA N 25 20.756 26.878 64.398 1.00 40.73 ATOM 193 C ALA N 25 21.616 27.586 65.426 1.00 41.88 ATOM 194 O ALA N 25 22.809 27.812 65.207 1.00 41.07 ATOM 195 CB ALA N 25 20.641 25.411 64.735 1.00 41.40 ATOM 196 N CYS N 26 20.996 27.911 66.557 1.00 43.57 ATOM 197 CA CYS N 26 21.658 28.626 67.645 1.00 45.20 ATOM 198 C CYS N 26 21.498 27.863 68.963 1.00 47.90 ATOM 199 O CYS N 26 20.376 27.633 69.413 1.00 48.32 ATOM 200 CB CYS N 26 21.094 30.052 67.817 1.00 43.73 ATOM 201 SG CYS N 26 20.984 31.117 66.353 1.00 41.17 ATOM 202 N VAL N 27 22.625 27.470 69.555 1.00 50.79 ATOM 203 CA VAL N 27 22.694 27.029 70.962 1.00 51.84 ATOM 204 C VAL N 27 24.148 27.150 71.452 1.00 53.63 ATOM 205 O VAL N 27 24.620 28.261 71.729 1.00 50.22 ATOM 206 CB VAL N 27 22.193 25.570 71.163 1.00 52.82 ATOM 207 CG1 VAL N 27 20.717 25.516 71.524 1.00 51.51 ATOM 208 CG2 VAL N 27 22.505 24.714 69.939 1.00 53.11 ATOM 209 N NH2 N 28 25.023 26.215 71.386 1.00 60.19 TER