HEADER RIBOSOME 24-MAY-16 5L3P TITLE Cryo-EM structure of stringent response factor RelA bound to TITLE 2 ErmCL-stalled ribosome complex COMPND MOL_ID: 57; COMPND 2 MOLECULE: GTP pyrophosphokinase,GTP pyrophosphokinase,GTP COMPND 3 pyrophosphokinase; COMPND 4 CHAIN: z; COMPND 5 EC: 2.7.6.5,2.7.6.5,2.7.6.5; COMPND 6 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 5L3P z 1 473 UNP P0AG22 RELA_ECO57 1 662 DBREF 5L3P z 487 561 PDB 5L3P 5L3P 487 561 DBREF 5L3P z 663 744 UNP P0AG22 RELA_ECO57 663 744 SEQRES 1 z 66 VAL PHE ASP ASP ARG VAL TYR VAL PHE THR PRO LYS GLY SEQRES 2 z 66 ASP VAL VAL ASP LEU PRO ALA GLY SER THR PRO LEU ASP SEQRES 3 z 66 PHE ALA TYR HIS ILE HIS SER ASP VAL GLY HIS ARG CYS SEQRES 4 z 66 ILE GLY ALA LYS ILE GLY GLY ARG ILE VAL PRO PHE THR SEQRES 5 z 66 TYR GLN LEU GLN MET GLY ASP GLN ILE GLU ILE ILE THR SEQRES 6 z 66 GLN ATOM 1 N VAL z 401 264.114 164.538 259.766 1.00 39.20 ATOM 2 CA VAL z 401 263.849 165.939 260.072 1.00 39.20 ATOM 3 C VAL z 401 264.120 166.828 258.863 1.00 39.20 ATOM 4 O VAL z 401 265.160 167.481 258.781 1.00 39.20 ATOM 5 N PHE z 402 263.177 166.846 257.927 1.00243.43 ATOM 6 CA PHE z 402 263.303 167.652 256.718 1.00243.43 ATOM 7 C PHE z 402 263.216 169.145 257.020 1.00243.43 ATOM 8 O PHE z 402 262.543 169.558 257.964 1.00243.43 ATOM 9 N ASP z 403 263.902 169.949 256.213 1.00184.65 ATOM 10 CA ASP z 403 263.876 171.398 256.373 1.00184.65 ATOM 11 C ASP z 403 262.611 171.960 255.735 1.00184.65 ATOM 12 O ASP z 403 262.573 172.227 254.533 1.00184.65 ATOM 13 N ASP z 404 261.575 172.131 256.550 1.00108.82 ATOM 14 CA ASP z 404 260.264 172.545 256.063 1.00108.82 ATOM 15 C ASP z 404 260.227 173.947 255.459 1.00108.82 ATOM 16 O ASP z 404 259.391 174.233 254.602 1.00108.82 ATOM 17 N ARG z 405 261.128 174.819 255.901 1.00120.13 ATOM 18 CA ARG z 405 261.119 176.201 255.433 1.00120.13 ATOM 19 C ARG z 405 262.448 176.928 255.615 1.00120.13 ATOM 20 O ARG z 405 263.311 176.493 256.377 1.00120.13 ATOM 21 N VAL z 406 262.599 178.040 254.902 1.00 37.29 ATOM 22 CA VAL z 406 263.778 178.889 255.021 1.00 37.29 ATOM 23 C VAL z 406 263.383 180.349 254.813 1.00 37.29 ATOM 24 O VAL z 406 262.493 180.651 254.017 1.00 37.29 ATOM 25 N TYR z 407 264.043 181.250 255.532 1.00 59.52 ATOM 26 CA TYR z 407 263.706 182.669 255.474 1.00 59.52 ATOM 27 C TYR z 407 264.601 183.465 254.527 1.00 59.52 ATOM 28 O TYR z 407 265.678 183.918 254.915 1.00 59.52 ATOM 29 N VAL z 408 264.153 183.629 253.286 1.00 52.98 ATOM 30 CA VAL z 408 264.861 184.469 252.325 1.00 52.98 ATOM 31 C VAL z 408 264.843 185.927 252.778 1.00 52.98 ATOM 32 O VAL z 408 263.837 186.409 253.299 1.00 52.98 ATOM 33 N PHE z 409 265.956 186.626 252.579 1.00 58.61 ATOM 34 CA PHE z 409 266.059 188.021 252.991 1.00 58.61 ATOM 35 C PHE z 409 265.425 188.977 251.984 1.00 58.61 ATOM 36 O PHE z 409 265.640 188.858 250.778 1.00 58.61 ATOM 37 N THR z 410 264.645 189.925 252.492 1.00140.75 ATOM 38 CA THR z 410 264.056 190.971 251.663 1.00140.75 ATOM 39 C THR z 410 265.102 192.010 251.272 1.00140.75 ATOM 40 O THR z 410 266.087 192.199 251.986 1.00140.75 ATOM 41 N PRO z 411 264.895 192.678 250.127 1.00 79.46 ATOM 42 CA PRO z 411 265.763 193.786 249.710 1.00 79.46 ATOM 43 C PRO z 411 265.760 194.901 250.754 1.00 79.46 ATOM 44 O PRO z 411 266.771 195.576 250.948 1.00 79.46 ATOM 45 N LYS z 412 264.623 195.076 251.418 1.00127.03 ATOM 46 CA LYS z 412 264.493 196.035 252.509 1.00127.03 ATOM 47 C LYS z 412 264.997 195.431 253.815 1.00127.03 ATOM 48 O LYS z 412 265.062 196.107 254.841 1.00127.03 ATOM 49 N GLY z 413 265.354 194.151 253.765 1.00 36.30 ATOM 50 CA GLY z 413 265.798 193.427 254.942 1.00 36.30 ATOM 51 C GLY z 413 264.655 192.784 255.703 1.00 36.30 ATOM 52 O GLY z 413 264.870 192.118 256.715 1.00 36.30 ATOM 53 N ASP z 414 263.436 192.985 255.213 1.00109.85 ATOM 54 CA ASP z 414 262.254 192.381 255.818 1.00109.85 ATOM 55 C ASP z 414 262.269 190.859 255.690 1.00109.85 ATOM 56 O ASP z 414 262.709 190.317 254.676 1.00109.85 ATOM 57 N VAL z 415 261.788 190.178 256.725 1.00 43.51 ATOM 58 CA VAL z 415 261.712 188.721 256.721 1.00 43.51 ATOM 59 C VAL z 415 260.642 188.217 255.756 1.00 43.51 ATOM 60 O VAL z 415 259.628 188.880 255.538 1.00 43.51 ATOM 61 N VAL z 416 260.874 187.040 255.183 1.00 50.39 ATOM 62 CA VAL z 416 259.920 186.440 254.257 1.00 50.39 ATOM 63 C VAL z 416 260.089 184.925 254.188 1.00 50.39 ATOM 64 O VAL z 416 260.751 184.406 253.289 1.00 50.39 ATOM 65 N ASP z 417 259.491 184.223 255.146 1.00 52.20 ATOM 66 CA ASP z 417 259.573 182.768 255.196 1.00 52.20 ATOM 67 C ASP z 417 258.885 182.122 253.998 1.00 52.20 ATOM 68 O ASP z 417 257.815 182.559 253.575 1.00 52.20 ATOM 69 N LEU z 418 259.506 181.079 253.458 1.00129.14 ATOM 70 CA LEU z 418 258.957 180.364 252.312 1.00129.14 ATOM 71 C LEU z 418 259.043 178.854 252.505 1.00129.14 ATOM 72 O LEU z 418 259.893 178.368 253.250 1.00129.14 ATOM 73 N PRO z 419 258.153 178.107 251.834 1.00 72.54 ATOM 74 CA PRO z 419 258.189 176.641 251.860 1.00 72.54 ATOM 75 C PRO z 419 259.486 176.124 251.245 1.00 72.54 ATOM 76 O PRO z 419 259.994 176.732 250.303 1.00 72.54 ATOM 77 N ALA z 420 260.013 175.025 251.776 1.00 30.11 ATOM 78 CA ALA z 420 261.287 174.488 251.309 1.00 30.11 ATOM 79 C ALA z 420 261.219 174.051 249.850 1.00 30.11 ATOM 80 O ALA z 420 260.233 173.460 249.412 1.00 30.11 ATOM 81 N GLY z 421 262.279 174.349 249.104 1.00 22.46 ATOM 82 CA GLY z 421 262.342 174.009 247.695 1.00 22.46 ATOM 83 C GLY z 421 261.559 174.983 246.837 1.00 22.46 ATOM 84 O GLY z 421 261.364 174.755 245.644 1.00 22.46 ATOM 85 N SER z 422 261.104 176.071 247.451 1.00 86.05 ATOM 86 CA SER z 422 260.315 177.079 246.751 1.00 86.05 ATOM 87 C SER z 422 261.112 177.786 245.659 1.00 86.05 ATOM 88 O SER z 422 262.294 178.081 245.830 1.00 86.05 ATOM 89 N THR z 423 260.452 178.053 244.537 1.00 58.62 ATOM 90 CA THR z 423 261.069 178.781 243.435 1.00 58.62 ATOM 91 C THR z 423 261.233 180.256 243.785 1.00 58.62 ATOM 92 O THR z 423 260.428 180.811 244.533 1.00 58.62 ATOM 93 N PRO z 424 262.288 180.890 243.251 1.00 86.74 ATOM 94 CA PRO z 424 262.540 182.318 243.472 1.00 86.74 ATOM 95 C PRO z 424 261.380 183.184 242.992 1.00 86.74 ATOM 96 O PRO z 424 261.109 184.230 243.581 1.00 86.74 ATOM 97 N LEU z 425 260.709 182.748 241.929 1.00 95.13 ATOM 98 CA LEU z 425 259.537 183.453 241.425 1.00 95.13 ATOM 99 C LEU z 425 258.400 183.417 242.439 1.00 95.13 ATOM 100 O LEU z 425 257.590 184.342 242.510 1.00 95.13 ATOM 101 N ASP z 426 258.345 182.342 243.218 1.00 42.92 ATOM 102 CA ASP z 426 257.342 182.206 244.267 1.00 42.92 ATOM 103 C ASP z 426 257.542 183.253 245.358 1.00 42.92 ATOM 104 O ASP z 426 256.583 183.693 245.993 1.00 42.92 ATOM 105 N PHE z 427 258.795 183.642 245.575 1.00 83.66 ATOM 106 CA PHE z 427 259.114 184.668 246.559 1.00 83.66 ATOM 107 C PHE z 427 258.569 186.029 246.140 1.00 83.66 ATOM 108 O PHE z 427 258.221 186.854 246.985 1.00 83.66 ATOM 109 N ALA z 428 258.503 186.261 244.832 1.00 45.98 ATOM 110 CA ALA z 428 257.951 187.506 244.311 1.00 45.98 ATOM 111 C ALA z 428 256.454 187.593 244.579 1.00 45.98 ATOM 112 O ALA z 428 255.933 188.657 244.912 1.00 45.98 ATOM 113 N TYR z 429 255.768 186.463 244.431 1.00 60.73 ATOM 114 CA TYR z 429 254.340 186.389 244.713 1.00 60.73 ATOM 115 C TYR z 429 254.057 186.574 246.200 1.00 60.73 ATOM 116 O TYR z 429 253.003 187.083 246.582 1.00 60.73 ATOM 117 N HIS z 430 255.004 186.151 247.031 1.00 47.68 ATOM 118 CA HIS z 430 254.852 186.239 248.479 1.00 47.68 ATOM 119 C HIS z 430 254.785 187.680 248.974 1.00 47.68 ATOM 120 O HIS z 430 254.114 187.973 249.963 1.00 47.68 ATOM 121 N ILE z 431 255.483 188.576 248.284 1.00100.30 ATOM 122 CA ILE z 431 255.484 189.987 248.654 1.00100.30 ATOM 123 C ILE z 431 254.229 190.690 248.149 1.00100.30 ATOM 124 O ILE z 431 253.607 191.469 248.871 1.00100.30 ATOM 125 N HIS z 432 253.864 190.406 246.903 1.00 61.42 ATOM 126 CA HIS z 432 252.656 190.960 246.305 1.00 61.42 ATOM 127 C HIS z 432 252.304 190.187 245.040 1.00 61.42 ATOM 128 O HIS z 432 253.191 189.709 244.333 1.00 61.42 ATOM 129 N SER z 433 251.011 190.062 244.759 1.00 74.61 ATOM 130 CA SER z 433 250.562 189.361 243.562 1.00 74.61 ATOM 131 C SER z 433 250.993 190.083 242.288 1.00 74.61 ATOM 132 O SER z 433 251.263 189.450 241.268 1.00 74.61 ATOM 133 N ASP z 434 251.052 191.410 242.353 1.00 30.07 ATOM 134 CA ASP z 434 251.486 192.212 241.215 1.00 30.07 ATOM 135 C ASP z 434 252.960 191.991 240.888 1.00 30.07 ATOM 136 O ASP z 434 253.364 192.056 239.727 1.00 30.07 ATOM 137 N VAL z 435 253.757 191.733 241.920 1.00 35.00 ATOM 138 CA VAL z 435 255.190 191.523 241.750 1.00 35.00 ATOM 139 C VAL z 435 255.508 190.245 240.981 1.00 35.00 ATOM 140 O VAL z 435 256.514 190.169 240.276 1.00 35.00 ATOM 141 N GLY z 436 254.646 189.243 241.121 1.00 23.79 ATOM 142 CA GLY z 436 254.868 187.959 240.483 1.00 23.79 ATOM 143 C GLY z 436 254.558 187.949 238.999 1.00 23.79 ATOM 144 O GLY z 436 255.195 187.229 238.230 1.00 23.79 ATOM 145 N HIS z 437 253.576 188.748 238.595 1.00 61.67 ATOM 146 CA HIS z 437 253.175 188.806 237.195 1.00 61.67 ATOM 147 C HIS z 437 254.091 189.699 236.366 1.00 61.67 ATOM 148 O HIS z 437 254.441 189.365 235.235 1.00 61.67 ATOM 149 N ARG z 438 254.475 190.836 236.936 1.00114.22 ATOM 150 CA ARG z 438 255.312 191.800 236.231 1.00114.22 ATOM 151 C ARG z 438 256.792 191.434 236.255 1.00114.22 ATOM 152 O ARG z 438 257.592 192.013 235.522 1.00114.22 ATOM 153 N CYS z 439 257.153 190.474 237.101 1.00 83.67 ATOM 154 CA CYS z 439 258.550 190.085 237.262 1.00 83.67 ATOM 155 C CYS z 439 259.140 189.468 235.997 1.00 83.67 ATOM 156 O CYS z 439 258.513 188.628 235.352 1.00 83.67 ATOM 157 N ILE z 440 260.351 189.893 235.651 1.00163.65 ATOM 158 CA ILE z 440 261.081 189.316 234.528 1.00163.65 ATOM 159 C ILE z 440 262.228 188.446 235.032 1.00163.65 ATOM 160 O ILE z 440 262.964 187.850 234.246 1.00163.65 ATOM 161 N GLY z 441 262.371 188.384 236.352 1.00 35.26 ATOM 162 CA GLY z 441 263.449 187.643 236.982 1.00 35.26 ATOM 163 C GLY z 441 263.779 188.243 238.334 1.00 35.26 ATOM 164 O GLY z 441 263.136 189.200 238.763 1.00 35.26 ATOM 165 N ALA z 442 264.778 187.686 239.012 1.00 38.82 ATOM 166 CA ALA z 442 265.182 188.213 240.310 1.00 38.82 ATOM 167 C ALA z 442 266.646 187.942 240.638 1.00 38.82 ATOM 168 O ALA z 442 267.172 186.866 240.353 1.00 38.82 ATOM 169 N LYS z 443 267.294 188.931 241.244 1.00110.04 ATOM 170 CA LYS z 443 268.678 188.803 241.684 1.00110.04 ATOM 171 C LYS z 443 268.789 187.946 242.941 1.00110.04 ATOM 172 O LYS z 443 267.855 187.876 243.741 1.00110.04 ATOM 173 N ILE z 444 269.935 187.295 243.109 1.00 95.69 ATOM 174 CA ILE z 444 270.202 186.501 244.303 1.00 95.69 ATOM 175 C ILE z 444 271.611 186.784 244.813 1.00 95.69 ATOM 176 O ILE z 444 272.590 186.266 244.276 1.00 95.69 ATOM 177 N GLY z 445 271.709 187.607 245.852 1.00 20.65 ATOM 178 CA GLY z 445 273.000 188.027 246.365 1.00 20.65 ATOM 179 C GLY z 445 273.592 189.126 245.504 1.00 20.65 ATOM 180 O GLY z 445 274.772 189.458 245.619 1.00 20.65 ATOM 181 N GLY z 446 272.759 189.691 244.636 1.00 23.62 ATOM 182 CA GLY z 446 273.193 190.693 243.681 1.00 23.62 ATOM 183 C GLY z 446 273.698 190.062 242.398 1.00 23.62 ATOM 184 O GLY z 446 274.058 190.759 241.449 1.00 23.62 ATOM 185 N ARG z 447 273.724 188.733 242.373 1.00196.21 ATOM 186 CA ARG z 447 274.079 187.991 241.170 1.00196.21 ATOM 187 C ARG z 447 272.819 187.513 240.458 1.00196.21 ATOM 188 O ARG z 447 271.824 187.181 241.103 1.00196.21 ATOM 189 N ILE z 448 272.860 187.484 239.130 1.00167.70 ATOM 190 CA ILE z 448 271.729 187.002 238.347 1.00167.70 ATOM 191 C ILE z 448 271.486 185.518 238.605 1.00167.70 ATOM 192 O ILE z 448 272.430 184.733 238.697 1.00167.70 ATOM 193 N VAL z 449 270.217 185.139 238.723 1.00 57.58 ATOM 194 CA VAL z 449 269.856 183.745 238.954 1.00 57.58 ATOM 195 C VAL z 449 268.700 183.307 238.061 1.00 57.58 ATOM 196 O VAL z 449 267.882 184.130 237.649 1.00 57.58 ATOM 197 N PRO z 450 268.635 182.002 237.756 1.00 69.10 ATOM 198 CA PRO z 450 267.524 181.428 236.990 1.00 69.10 ATOM 199 C PRO z 450 266.206 181.577 237.743 1.00 69.10 ATOM 200 O PRO z 450 266.194 181.497 238.971 1.00 69.10 ATOM 201 N PHE z 451 265.114 181.793 237.015 1.00135.00 ATOM 202 CA PHE z 451 263.802 181.944 237.633 1.00135.00 ATOM 203 C PHE z 451 263.348 180.659 238.322 1.00135.00 ATOM 204 O PHE z 451 262.598 180.698 239.297 1.00135.00 ATOM 205 N THR z 452 263.809 179.523 237.809 1.00129.89 ATOM 206 CA THR z 452 263.443 178.225 238.363 1.00129.89 ATOM 207 C THR z 452 264.296 177.833 239.567 1.00129.89 ATOM 208 O THR z 452 264.007 176.845 240.243 1.00129.89 ATOM 209 N TYR z 453 265.346 178.605 239.829 1.00 89.54 ATOM 210 CA TYR z 453 266.267 178.300 240.921 1.00 89.54 ATOM 211 C TYR z 453 265.597 178.392 242.289 1.00 89.54 ATOM 212 O TYR z 453 264.814 179.307 242.548 1.00 89.54 ATOM 213 N GLN z 454 265.911 177.437 243.159 1.00 59.79 ATOM 214 CA GLN z 454 265.361 177.415 244.511 1.00 59.79 ATOM 215 C GLN z 454 265.975 178.495 245.395 1.00 59.79 ATOM 216 O GLN z 454 267.157 178.815 245.270 1.00 59.79 ATOM 217 N LEU z 455 265.166 179.053 246.290 1.00158.27 ATOM 218 CA LEU z 455 265.645 180.051 247.239 1.00158.27 ATOM 219 C LEU z 455 266.550 179.432 248.301 1.00158.27 ATOM 220 O LEU z 455 266.310 178.314 248.759 1.00158.27 ATOM 221 N GLN z 456 267.589 180.164 248.689 1.00 90.28 ATOM 222 CA GLN z 456 268.471 179.736 249.769 1.00 90.28 ATOM 223 C GLN z 456 268.201 180.575 251.013 1.00 90.28 ATOM 224 O GLN z 456 267.894 181.762 250.908 1.00 90.28 ATOM 225 N MET z 457 268.305 179.957 252.186 1.00 83.48 ATOM 226 CA MET z 457 268.065 180.672 253.436 1.00 83.48 ATOM 227 C MET z 457 269.106 181.764 253.662 1.00 83.48 ATOM 228 O MET z 457 270.303 181.546 253.474 1.00 83.48 ATOM 229 N GLY z 458 268.637 182.940 254.067 1.00 27.89 ATOM 230 CA GLY z 458 269.507 184.063 254.367 1.00 27.89 ATOM 231 C GLY z 458 269.900 184.826 253.117 1.00 27.89 ATOM 232 O GLY z 458 270.583 185.847 253.186 1.00 27.89 ATOM 233 N ASP z 459 269.464 184.319 251.968 1.00 94.23 ATOM 234 CA ASP z 459 269.768 184.931 250.679 1.00 94.23 ATOM 235 C ASP z 459 268.991 186.221 250.444 1.00 94.23 ATOM 236 O ASP z 459 267.840 186.347 250.862 1.00 94.23 ATOM 237 N GLN z 460 269.623 187.176 249.770 1.00 57.80 ATOM 238 CA GLN z 460 268.943 188.400 249.362 1.00 57.80 ATOM 239 C GLN z 460 267.951 188.082 248.246 1.00 57.80 ATOM 240 O GLN z 460 268.177 187.170 247.451 1.00 57.80 ATOM 241 N ILE z 461 266.856 188.832 248.187 1.00 82.03 ATOM 242 CA ILE z 461 265.828 188.591 247.179 1.00 82.03 ATOM 243 C ILE z 461 265.417 189.872 246.459 1.00 82.03 ATOM 244 O ILE z 461 264.445 190.524 246.841 1.00 82.03 ATOM 245 N GLU z 462 266.164 190.228 245.419 1.00 91.52 ATOM 246 CA GLU z 462 265.862 191.417 244.628 1.00 91.52 ATOM 247 C GLU z 462 265.081 191.082 243.359 1.00 91.52 ATOM 248 O GLU z 462 265.670 190.782 242.320 1.00 91.52 ATOM 249 N ILE z 463 263.755 191.129 243.452 1.00157.54 ATOM 250 CA ILE z 463 262.893 190.891 242.298 1.00157.54 ATOM 251 C ILE z 463 263.071 191.970 241.233 1.00157.54 ATOM 252 O ILE z 463 263.226 193.149 241.551 1.00157.54 ATOM 253 N ILE z 464 263.043 191.561 239.968 1.00 89.69 ATOM 254 CA ILE z 464 263.206 192.492 238.857 1.00 89.69 ATOM 255 C ILE z 464 261.868 192.880 238.234 1.00 89.69 ATOM 256 O ILE z 464 261.263 192.095 237.503 1.00 89.69 ATOM 257 N THR z 465 261.410 194.093 238.531 1.00 42.42 ATOM 258 CA THR z 465 260.166 194.607 237.967 1.00 42.42 ATOM 259 C THR z 465 260.268 194.781 236.454 1.00 42.42 ATOM 260 O THR z 465 261.315 195.167 235.934 1.00 42.42 ATOM 261 N GLN z 466 259.176 194.494 235.752 1.00129.88 ATOM 262 CA GLN z 466 259.145 194.620 234.299 1.00129.88 ATOM 263 C GLN z 466 259.008 196.077 233.872 1.00129.88 ATOM 264 O GLN z 466 260.003 196.760 233.632 1.00129.88 TER