HEADER OXIDOREDUCTASE 28-JUN-16 5LDW TITLE Structure of mammalian respiratory Complex I, class1 COMPND MOL_ID: 18; COMPND 2 MOLECULE: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, COMPND 3 NDUFS6,NADH dehydrogenase [ubiquinone] iron-sulfur protein COMPND 4 6, mitochondrial,NADH dehydrogenase [ubiquinone] COMPND 5 iron-sulfur protein 6, mitochondrial; COMPND 6 CHAIN: R; COMPND 7 This chain coordinates a zinc atom; EXPDTA ELECTRON MICROSCOPY DBREF 5LDW R 5 58 PDB 5LDW 5LDW 5 58 DBREF 5LDW R 59 93 UNP P23934 NDUS6_BOVIN 87 121 SEQRES 1 R 35 CYS ASP GLY GLY GLY GLY ALA LEU GLY HIS PRO ARG VAL SEQRES 2 R 35 TYR ILE ASN LEU ASP LYS GLU THR LYS THR GLY THR CYS SEQRES 3 R 35 GLY TYR CYS GLY LEU GLN PHE ARG GLN ATOM 1 N CYS R 59 249.813 213.975 340.659 1.00 60.79 ATOM 2 CA CYS R 59 249.385 215.356 340.432 1.00 60.26 ATOM 3 C CYS R 59 248.252 215.445 339.413 1.00 60.27 ATOM 4 O CYS R 59 248.228 214.696 338.432 1.00 60.33 ATOM 5 CB CYS R 59 250.564 216.223 339.981 1.00 59.75 ATOM 6 SG CYS R 59 250.237 218.002 340.012 1.00 59.19 ATOM 7 N ASP R 60 247.322 216.364 339.670 1.00 60.37 ATOM 8 CA ASP R 60 246.207 216.679 338.770 1.00 60.43 ATOM 9 C ASP R 60 245.791 218.140 338.917 1.00 60.50 ATOM 10 O ASP R 60 245.792 218.685 340.027 1.00 60.87 ATOM 11 CB ASP R 60 245.002 215.770 339.042 1.00 60.55 ATOM 12 CG ASP R 60 245.099 214.429 338.329 1.00 60.69 ATOM 13 OD1 ASP R 60 245.153 214.409 337.080 1.00 60.60 ATOM 14 OD2 ASP R 60 245.107 213.390 339.022 1.00 60.90 ATOM 15 N GLY R 61 245.438 218.763 337.794 1.00 60.34 ATOM 16 CA GLY R 61 244.957 220.147 337.768 1.00 60.22 ATOM 17 C GLY R 61 243.568 220.286 338.363 1.00 60.18 ATOM 18 O GLY R 61 243.341 221.123 339.242 1.00 60.16 ATOM 19 N GLY R 62 242.645 219.458 337.875 1.00 60.15 ATOM 20 CA GLY R 62 241.267 219.410 338.362 1.00 60.04 ATOM 21 C GLY R 62 240.483 218.293 337.701 1.00 59.99 ATOM 22 O GLY R 62 239.434 218.535 337.098 1.00 59.87 ATOM 23 N GLY R 63 241.003 217.071 337.820 1.00 60.04 ATOM 24 CA GLY R 63 240.410 215.886 337.197 1.00 59.98 ATOM 25 C GLY R 63 240.630 215.830 335.696 1.00 59.83 ATOM 26 O GLY R 63 241.622 216.356 335.181 1.00 59.79 ATOM 27 N GLY R 64 239.695 215.185 335.000 1.00 59.67 ATOM 28 CA GLY R 64 239.733 215.064 333.541 1.00 59.39 ATOM 29 C GLY R 64 239.266 216.302 332.794 1.00 59.27 ATOM 30 O GLY R 64 239.505 216.426 331.589 1.00 59.12 ATOM 31 N ALA R 65 238.600 217.211 333.512 1.00 59.21 ATOM 32 CA ALA R 65 238.070 218.458 332.950 1.00 58.96 ATOM 33 C ALA R 65 239.176 219.431 332.538 1.00 58.66 ATOM 34 O ALA R 65 239.162 219.953 331.419 1.00 58.46 ATOM 35 CB ALA R 65 237.104 219.117 333.928 1.00 59.00 ATOM 36 N LEU R 66 240.123 219.665 333.447 1.00 58.37 ATOM 37 CA LEU R 66 241.291 220.502 333.174 1.00 58.00 ATOM 38 C LEU R 66 242.439 219.655 332.632 1.00 57.52 ATOM 39 O LEU R 66 242.681 218.541 333.110 1.00 57.37 ATOM 40 CB LEU R 66 241.727 221.274 334.429 1.00 58.06 ATOM 41 CG LEU R 66 240.811 222.373 334.995 1.00 58.02 ATOM 42 CD1 LEU R 66 241.192 222.696 336.432 1.00 57.97 ATOM 43 CD2 LEU R 66 240.817 223.639 334.146 1.00 57.67 ATOM 44 N GLY R 67 243.133 220.198 331.633 1.00 56.93 ATOM 45 CA GLY R 67 244.204 219.496 330.926 1.00 56.22 ATOM 46 C GLY R 67 245.457 219.276 331.751 1.00 55.79 ATOM 47 O GLY R 67 246.315 220.158 331.837 1.00 55.66 ATOM 48 N HIS R 68 245.546 218.094 332.359 1.00 55.26 ATOM 49 CA HIS R 68 246.716 217.676 333.130 1.00 54.88 ATOM 50 C HIS R 68 246.876 216.151 333.070 1.00 54.03 ATOM 51 O HIS R 68 246.087 215.423 333.684 1.00 54.39 ATOM 52 CB HIS R 68 246.619 218.162 334.583 1.00 55.72 ATOM 53 CG HIS R 68 247.874 217.965 335.376 1.00 56.57 ATOM 54 ND1 HIS R 68 248.271 216.733 335.850 1.00 56.87 ATOM 55 CD2 HIS R 68 248.818 218.845 335.785 1.00 57.11 ATOM 56 CE1 HIS R 68 249.409 216.862 336.506 1.00 57.35 ATOM 57 NE2 HIS R 68 249.757 218.135 336.494 1.00 57.70 ATOM 58 N PRO R 69 247.881 215.663 332.310 1.00 53.00 ATOM 59 CA PRO R 69 248.242 214.241 332.341 1.00 52.51 ATOM 60 C PRO R 69 248.931 213.864 333.654 1.00 52.31 ATOM 61 O PRO R 69 249.741 214.640 334.173 1.00 52.42 ATOM 62 CB PRO R 69 249.206 214.097 331.160 1.00 52.37 ATOM 63 CG PRO R 69 248.911 215.260 330.276 1.00 52.47 ATOM 64 CD PRO R 69 248.591 216.368 331.228 1.00 52.64 ATOM 65 N ARG R 70 248.606 212.678 334.169 1.00 52.00 ATOM 66 CA ARG R 70 249.032 212.234 335.501 1.00 51.71 ATOM 67 C ARG R 70 250.514 211.851 335.564 1.00 51.57 ATOM 68 O ARG R 70 250.967 210.950 334.849 1.00 51.48 ATOM 69 CB ARG R 70 248.149 211.074 335.979 1.00 51.67 ATOM 70 CG ARG R 70 248.112 210.879 337.488 1.00 51.71 ATOM 71 CD ARG R 70 247.126 209.791 337.888 1.00 51.88 ATOM 72 NE ARG R 70 245.733 210.218 337.738 1.00 52.13 ATOM 73 CZ ARG R 70 244.668 209.431 337.885 1.00 52.35 ATOM 74 NH1 ARG R 70 244.803 208.145 338.191 1.00 52.46 ATOM 75 NH2 ARG R 70 243.453 209.936 337.723 1.00 52.45 ATOM 76 N VAL R 71 251.253 212.559 336.420 1.00 51.54 ATOM 77 CA VAL R 71 252.682 212.311 336.662 1.00 51.59 ATOM 78 C VAL R 71 252.909 212.090 338.161 1.00 51.91 ATOM 79 O VAL R 71 252.427 212.868 338.992 1.00 51.98 ATOM 80 CB VAL R 71 253.580 213.473 336.147 1.00 51.42 ATOM 81 CG1 VAL R 71 255.061 213.170 336.349 1.00 51.36 ATOM 82 CG2 VAL R 71 253.326 213.757 334.674 1.00 51.41 ATOM 83 N TYR R 72 253.638 211.023 338.488 1.00 52.27 ATOM 84 CA TYR R 72 254.007 210.705 339.868 1.00 52.82 ATOM 85 C TYR R 72 255.361 211.324 340.218 1.00 53.39 ATOM 86 O TYR R 72 256.334 211.169 339.472 1.00 53.46 ATOM 87 CB TYR R 72 254.035 209.187 340.087 1.00 52.67 ATOM 88 CG TYR R 72 252.710 208.492 339.843 1.00 52.54 ATOM 89 CD1 TYR R 72 251.766 208.361 340.870 1.00 52.50 ATOM 90 CD2 TYR R 72 252.401 207.954 338.587 1.00 52.50 ATOM 91 CE1 TYR R 72 250.551 207.721 340.650 1.00 52.48 ATOM 92 CE2 TYR R 72 251.188 207.314 338.357 1.00 52.51 ATOM 93 CZ TYR R 72 250.268 207.200 339.390 1.00 52.51 ATOM 94 OH TYR R 72 249.068 206.566 339.166 1.00 52.58 ATOM 95 N ILE R 73 255.408 212.026 341.350 1.00 54.14 ATOM 96 CA ILE R 73 256.619 212.720 341.808 1.00 55.00 ATOM 97 C ILE R 73 257.172 212.039 343.063 1.00 55.88 ATOM 98 O ILE R 73 256.430 211.777 344.017 1.00 56.08 ATOM 99 CB ILE R 73 256.386 214.237 342.076 1.00 54.92 ATOM 100 CG1 ILE R 73 255.514 214.891 340.994 1.00 54.93 ATOM 101 CG2 ILE R 73 257.707 214.990 342.173 1.00 54.89 ATOM 102 CD1 ILE R 73 254.075 215.118 341.408 1.00 55.06 ATOM 103 N ASN R 74 258.475 211.756 343.044 1.00 56.84 ATOM 104 CA ASN R 74 259.168 211.106 344.159 1.00 57.68 ATOM 105 C ASN R 74 259.663 212.109 345.197 1.00 58.36 ATOM 106 O ASN R 74 260.164 213.184 344.848 1.00 58.47 ATOM 107 CB ASN R 74 260.343 210.271 343.644 1.00 57.52 ATOM 108 N LEU R 75 259.514 211.744 346.469 1.00 59.23 ATOM 109 CA LEU R 75 260.014 212.538 347.590 1.00 60.11 ATOM 110 C LEU R 75 260.944 211.695 348.466 1.00 60.90 ATOM 111 O LEU R 75 260.490 210.837 349.233 1.00 61.08 ATOM 112 CB LEU R 75 258.854 213.120 348.406 1.00 59.90 ATOM 113 N ASP R 76 262.247 211.942 348.326 1.00 61.78 ATOM 114 CA ASP R 76 263.282 211.193 349.044 1.00 62.64 ATOM 115 C ASP R 76 264.289 212.107 349.745 1.00 63.25 ATOM 116 O ASP R 76 264.667 211.852 350.893 1.00 63.44 ATOM 117 CB ASP R 76 264.003 210.228 348.098 1.00 62.62 ATOM 118 N LYS R 77 264.718 213.159 349.047 1.00 63.89 ATOM 119 CA LYS R 77 265.647 214.149 349.592 1.00 64.53 ATOM 120 C LYS R 77 264.904 215.210 350.401 1.00 65.04 ATOM 121 O LYS R 77 263.851 215.701 349.978 1.00 65.25 ATOM 122 CB LYS R 77 266.455 214.804 348.470 1.00 64.46 ATOM 123 N GLU R 78 265.462 215.549 351.564 1.00 65.42 ATOM 124 CA GLU R 78 264.893 216.562 352.460 1.00 65.70 ATOM 125 C GLU R 78 265.047 217.979 351.902 1.00 65.88 ATOM 126 O GLU R 78 264.104 218.775 351.955 1.00 65.94 ATOM 127 CB GLU R 78 265.518 216.462 353.855 1.00 65.70 ATOM 128 N THR R 79 266.234 218.278 351.372 1.00 65.95 ATOM 129 CA THR R 79 266.519 219.560 350.727 1.00 65.99 ATOM 130 C THR R 79 265.975 219.583 349.299 1.00 66.03 ATOM 131 O THR R 79 266.076 218.585 348.576 1.00 66.14 ATOM 132 CB THR R 79 268.029 219.864 350.708 1.00 65.97 ATOM 133 N LYS R 80 265.413 220.734 348.918 1.00 65.95 ATOM 134 CA LYS R 80 264.764 220.981 347.612 1.00 65.79 ATOM 135 C LYS R 80 263.539 220.095 347.340 1.00 65.56 ATOM 136 O LYS R 80 263.668 218.897 347.059 1.00 65.56 ATOM 137 CB LYS R 80 265.769 220.937 346.447 1.00 65.84 ATOM 138 N THR R 81 262.358 220.706 347.430 1.00 65.09 ATOM 139 CA THR R 81 261.081 220.014 347.234 1.00 64.43 ATOM 140 C THR R 81 260.815 219.688 345.764 1.00 63.90 ATOM 141 O THR R 81 261.147 220.478 344.873 1.00 63.94 ATOM 142 CB THR R 81 259.904 220.835 347.796 1.00 64.47 ATOM 143 N GLY R 82 260.216 218.521 345.530 1.00 63.17 ATOM 144 CA GLY R 82 259.910 218.037 344.183 1.00 62.26 ATOM 145 C GLY R 82 258.649 218.640 343.592 1.00 61.54 ATOM 146 O GLY R 82 257.625 218.749 344.273 1.00 61.53 ATOM 147 N THR R 83 258.737 219.025 342.320 1.00 60.72 ATOM 148 CA THR R 83 257.618 219.609 341.576 1.00 59.92 ATOM 149 C THR R 83 257.331 218.821 340.298 1.00 59.36 ATOM 150 O THR R 83 258.250 218.264 339.688 1.00 59.38 ATOM 151 CB THR R 83 257.894 221.080 341.213 1.00 59.79 ATOM 152 N CYS R 84 256.057 218.787 339.900 1.00 58.69 ATOM 153 CA CYS R 84 255.618 218.078 338.690 1.00 58.07 ATOM 154 C CYS R 84 256.072 218.809 337.414 1.00 57.52 ATOM 155 O CYS R 84 256.489 219.971 337.470 1.00 57.56 ATOM 156 CB CYS R 84 254.091 217.851 338.710 1.00 58.25 ATOM 157 SG CYS R 84 253.133 218.748 337.462 1.00 58.54 ATOM 158 N GLY R 85 255.988 218.119 336.276 1.00 56.85 ATOM 159 CA GLY R 85 256.391 218.670 334.978 1.00 56.05 ATOM 160 C GLY R 85 255.515 219.792 334.444 1.00 55.56 ATOM 161 O GLY R 85 255.997 220.666 333.719 1.00 55.40 ATOM 162 N TYR R 86 254.233 219.768 334.812 1.00 55.33 ATOM 163 CA TYR R 86 253.239 220.730 334.325 1.00 55.43 ATOM 164 C TYR R 86 252.994 221.907 335.275 1.00 55.98 ATOM 165 O TYR R 86 252.758 223.030 334.821 1.00 55.95 ATOM 166 CB TYR R 86 251.910 220.024 334.025 1.00 54.96 ATOM 167 CG TYR R 86 252.009 218.865 333.055 1.00 54.74 ATOM 168 CD1 TYR R 86 252.095 219.083 331.673 1.00 54.65 ATOM 169 CD2 TYR R 86 252.002 217.545 333.516 1.00 54.60 ATOM 170 CE1 TYR R 86 252.183 218.018 330.782 1.00 54.36 ATOM 171 CE2 TYR R 86 252.087 216.476 332.633 1.00 54.36 ATOM 172 CZ TYR R 86 252.177 216.716 331.271 1.00 54.14 ATOM 173 OH TYR R 86 252.264 215.655 330.401 1.00 53.92 ATOM 174 N CYS R 87 253.046 221.641 336.581 1.00 56.89 ATOM 175 CA CYS R 87 252.770 222.647 337.614 1.00 57.70 ATOM 176 C CYS R 87 254.035 223.108 338.334 1.00 58.39 ATOM 177 O CYS R 87 255.041 222.394 338.365 1.00 58.50 ATOM 178 CB CYS R 87 251.777 222.107 338.651 1.00 57.86 ATOM 179 SG CYS R 87 250.335 221.242 337.994 1.00 57.98 ATOM 180 N GLY R 88 253.967 224.306 338.913 1.00 59.17 ATOM 181 CA GLY R 88 255.017 224.824 339.791 1.00 60.76 ATOM 182 C GLY R 88 254.776 224.500 341.258 1.00 61.97 ATOM 183 O GLY R 88 255.463 225.032 342.135 1.00 62.29 ATOM 184 N LEU R 89 253.801 223.625 341.515 1.00 62.90 ATOM 185 CA LEU R 89 253.429 223.204 342.867 1.00 63.95 ATOM 186 C LEU R 89 254.443 222.212 343.431 1.00 64.91 ATOM 187 O LEU R 89 254.803 221.234 342.767 1.00 65.01 ATOM 188 CB LEU R 89 252.020 222.593 342.878 1.00 63.79 ATOM 189 CG LEU R 89 250.814 223.451 342.469 1.00 63.78 ATOM 190 CD1 LEU R 89 249.678 222.568 341.975 1.00 63.85 ATOM 191 CD2 LEU R 89 250.340 224.358 343.598 1.00 63.83 ATOM 192 N GLN R 90 254.892 222.479 344.656 1.00 66.23 ATOM 193 CA GLN R 90 255.911 221.666 345.326 1.00 67.59 ATOM 194 C GLN R 90 255.326 220.820 346.458 1.00 68.39 ATOM 195 O GLN R 90 254.339 221.211 347.091 1.00 68.53 ATOM 196 CB GLN R 90 257.047 222.553 345.847 1.00 68.03 ATOM 197 CG GLN R 90 257.964 223.095 344.757 1.00 68.53 ATOM 198 CD GLN R 90 258.951 224.132 345.264 1.00 69.06 ATOM 199 OE1 GLN R 90 259.724 223.880 346.190 1.00 69.27 ATOM 200 NE2 GLN R 90 258.939 225.306 344.643 1.00 69.20 ATOM 201 N PHE R 91 255.948 219.665 346.700 1.00 69.28 ATOM 202 CA PHE R 91 255.499 218.715 347.722 1.00 70.05 ATOM 203 C PHE R 91 256.622 218.333 348.686 1.00 70.63 ATOM 204 O PHE R 91 257.770 218.144 348.271 1.00 70.72 ATOM 205 CB PHE R 91 254.914 217.454 347.072 1.00 70.01 ATOM 206 CG PHE R 91 253.705 217.711 346.210 1.00 69.90 ATOM 207 CD1 PHE R 91 252.428 217.793 346.774 1.00 69.94 ATOM 208 CD2 PHE R 91 253.837 217.860 344.826 1.00 69.77 ATOM 209 CE1 PHE R 91 251.311 218.028 345.978 1.00 69.85 ATOM 210 CE2 PHE R 91 252.723 218.095 344.026 1.00 69.77 ATOM 211 CZ PHE R 91 251.459 218.178 344.602 1.00 69.80 ATOM 212 N ARG R 92 256.274 218.223 349.968 1.00 71.37 ATOM 213 CA ARG R 92 257.218 217.846 351.027 1.00 72.05 ATOM 214 C ARG R 92 256.701 216.677 351.867 1.00 72.18 ATOM 215 O ARG R 92 255.490 216.550 352.083 1.00 72.30 ATOM 216 CB ARG R 92 257.537 219.046 351.925 1.00 72.64 ATOM 217 CG ARG R 92 258.491 220.055 351.304 1.00 73.42 ATOM 218 CD ARG R 92 258.766 221.216 352.245 1.00 74.15 ATOM 219 NE ARG R 92 259.660 222.208 351.644 1.00 74.82 ATOM 220 CZ ARG R 92 259.265 223.283 350.960 1.00 75.11 ATOM 221 NH1 ARG R 92 257.975 223.539 350.770 1.00 75.26 ATOM 222 NH2 ARG R 92 260.172 224.111 350.461 1.00 75.30 ATOM 223 N GLN R 93 257.638 215.847 352.336 1.00 72.32 ATOM 224 CA GLN R 93 257.372 214.612 353.105 1.00 72.48 ATOM 225 C GLN R 93 256.425 213.643 352.397 1.00 72.44 ATOM 226 O GLN R 93 256.724 212.456 352.262 1.00 72.35 ATOM 227 CB GLN R 93 256.873 214.915 354.527 1.00 72.68 ATOM 228 CG GLN R 93 257.955 215.380 355.493 1.00 72.89 ATOM 229 CD GLN R 93 257.490 215.409 356.940 1.00 72.99 ATOM 230 OE1 GLN R 93 256.493 216.051 357.278 1.00 73.10 ATOM 231 NE2 GLN R 93 258.223 214.720 357.807 1.00 72.85 ATOM 232 ZN ZN R 201 250.857 218.964 337.970 1.00 58.46 TER