HEADER OXIDOREDUCTASE 28-JUN-16 5LDX TITLE Structure of mammalian respiratory Complex I, class3. COMPND MOL_ID: 18; COMPND 2 MOLECULE: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, COMPND 3 mitochondrial,NADH dehydrogenase [ubiquinone] iron-sulfur COMPND 4 protein 6, mitochondrial,NADH dehydrogenase [ubiquinone] COMPND 5 iron-sulfur protein 6, mitochondrial; COMPND 6 CHAIN: R; EXPDTA ELECTRON MICROSCOPY DBREF 5LDX R 5 58 PDB 5LDX 5LDX 5 58 DBREF 5LDX R 59 93 UNP P23934 NDUS6_BOVIN 87 121 SEQRES 1 R 35 CYS ASP GLY GLY GLY GLY ALA LEU GLY HIS PRO ARG VAL SEQRES 2 R 35 TYR ILE ASN LEU ASP LYS GLU THR LYS THR GLY THR CYS SEQRES 3 R 35 GLY TYR CYS GLY LEU GLN PHE ARG GLN ATOM 1 N CYS R 59 248.976 212.825 341.986 1.00 60.79 ATOM 2 CA CYS R 59 248.540 214.201 341.742 1.00 60.26 ATOM 3 C CYS R 59 247.463 214.278 340.662 1.00 60.27 ATOM 4 O CYS R 59 247.505 213.534 339.678 1.00 60.33 ATOM 5 CB CYS R 59 249.728 215.088 341.360 1.00 59.75 ATOM 6 SG CYS R 59 249.373 216.862 341.381 1.00 59.19 ATOM 7 N ASP R 60 246.507 215.181 340.872 1.00 60.37 ATOM 8 CA ASP R 60 245.438 215.484 339.913 1.00 60.43 ATOM 9 C ASP R 60 244.992 216.938 340.043 1.00 60.50 ATOM 10 O ASP R 60 244.924 217.477 341.154 1.00 60.87 ATOM 11 CB ASP R 60 244.234 214.556 340.114 1.00 60.55 ATOM 12 CG ASP R 60 244.391 213.220 339.401 1.00 60.69 ATOM 13 OD1 ASP R 60 244.514 213.207 338.157 1.00 60.60 ATOM 14 OD2 ASP R 60 244.377 212.178 340.089 1.00 60.90 ATOM 15 N GLY R 61 244.692 217.561 338.905 1.00 60.34 ATOM 16 CA GLY R 61 244.192 218.938 338.859 1.00 60.22 ATOM 17 C GLY R 61 242.770 219.053 339.377 1.00 60.18 ATOM 18 O GLY R 61 242.482 219.882 340.246 1.00 60.16 ATOM 19 N GLY R 62 241.888 218.214 338.835 1.00 60.15 ATOM 20 CA GLY R 62 240.487 218.142 339.245 1.00 60.04 ATOM 21 C GLY R 62 239.758 217.017 338.537 1.00 59.99 ATOM 22 O GLY R 62 238.740 217.246 337.878 1.00 59.87 ATOM 23 N GLY R 63 240.289 215.802 338.679 1.00 60.04 ATOM 24 CA GLY R 63 239.750 214.612 338.019 1.00 59.98 ATOM 25 C GLY R 63 240.053 214.567 336.532 1.00 59.83 ATOM 26 O GLY R 63 241.064 215.111 336.075 1.00 59.79 ATOM 27 N GLY R 64 239.168 213.912 335.782 1.00 59.67 ATOM 28 CA GLY R 64 239.288 213.799 334.327 1.00 59.39 ATOM 29 C GLY R 64 238.844 215.034 333.561 1.00 59.27 ATOM 30 O GLY R 64 239.147 215.168 332.372 1.00 59.12 ATOM 31 N ALA R 65 238.125 215.929 334.245 1.00 59.21 ATOM 32 CA ALA R 65 237.608 217.170 333.660 1.00 58.96 ATOM 33 C ALA R 65 238.720 218.162 333.314 1.00 58.66 ATOM 34 O ALA R 65 238.759 218.690 332.199 1.00 58.46 ATOM 35 CB ALA R 65 236.579 217.809 334.587 1.00 59.00 ATOM 36 N LEU R 66 239.611 218.406 334.275 1.00 58.37 ATOM 37 CA LEU R 66 240.780 219.262 334.071 1.00 58.00 ATOM 38 C LEU R 66 241.969 218.435 333.589 1.00 57.52 ATOM 39 O LEU R 66 242.201 217.322 334.075 1.00 57.37 ATOM 40 CB LEU R 66 241.134 220.034 335.352 1.00 58.06 ATOM 41 CG LEU R 66 240.171 221.116 335.871 1.00 58.02 ATOM 42 CD1 LEU R 66 240.467 221.437 337.328 1.00 57.97 ATOM 43 CD2 LEU R 66 240.204 222.386 335.029 1.00 57.67 ATOM 44 N GLY R 67 242.708 218.994 332.633 1.00 56.93 ATOM 45 CA GLY R 67 243.827 218.312 331.983 1.00 56.22 ATOM 46 C GLY R 67 245.036 218.107 332.875 1.00 55.79 ATOM 47 O GLY R 67 245.874 219.001 333.012 1.00 55.66 ATOM 48 N HIS R 68 245.110 216.923 333.481 1.00 55.26 ATOM 49 CA HIS R 68 246.242 216.519 334.314 1.00 54.88 ATOM 50 C HIS R 68 246.428 214.997 334.256 1.00 54.03 ATOM 51 O HIS R 68 245.618 214.253 334.822 1.00 54.39 ATOM 52 CB HIS R 68 246.057 216.995 335.762 1.00 55.72 ATOM 53 CG HIS R 68 247.270 216.813 336.622 1.00 56.57 ATOM 54 ND1 HIS R 68 247.659 215.585 337.111 1.00 56.87 ATOM 55 CD2 HIS R 68 248.176 217.705 337.086 1.00 57.11 ATOM 56 CE1 HIS R 68 248.757 215.728 337.830 1.00 57.35 ATOM 57 NE2 HIS R 68 249.085 217.006 337.843 1.00 57.70 ATOM 58 N PRO R 69 247.481 214.528 333.551 1.00 53.00 ATOM 59 CA PRO R 69 247.862 213.111 333.595 1.00 52.51 ATOM 60 C PRO R 69 248.483 212.738 334.943 1.00 52.31 ATOM 61 O PRO R 69 249.251 213.523 335.509 1.00 52.42 ATOM 62 CB PRO R 69 248.892 212.988 332.469 1.00 52.37 ATOM 63 CG PRO R 69 248.628 214.151 331.575 1.00 52.47 ATOM 64 CD PRO R 69 248.239 215.249 332.513 1.00 52.64 ATOM 65 N ARG R 70 248.149 211.544 335.433 1.00 52.00 ATOM 66 CA ARG R 70 248.507 211.100 336.785 1.00 51.71 ATOM 67 C ARG R 70 249.989 210.739 336.928 1.00 51.57 ATOM 68 O ARG R 70 250.495 209.849 336.235 1.00 51.48 ATOM 69 CB ARG R 70 247.617 209.924 337.208 1.00 51.67 ATOM 70 CG ARG R 70 247.500 209.721 338.712 1.00 51.71 ATOM 71 CD ARG R 70 246.511 208.616 339.052 1.00 51.88 ATOM 72 NE ARG R 70 245.122 209.022 338.827 1.00 52.13 ATOM 73 CZ ARG R 70 244.062 208.218 338.912 1.00 52.35 ATOM 74 NH1 ARG R 70 244.200 206.933 339.219 1.00 52.46 ATOM 75 NH2 ARG R 70 242.851 208.706 338.685 1.00 52.45 ATOM 76 N VAL R 71 250.669 211.454 337.827 1.00 51.54 ATOM 77 CA VAL R 71 252.086 211.226 338.146 1.00 51.59 ATOM 78 C VAL R 71 252.234 211.001 339.654 1.00 51.91 ATOM 79 O VAL R 71 251.695 211.767 340.461 1.00 51.98 ATOM 80 CB VAL R 71 252.993 212.404 337.687 1.00 51.42 ATOM 81 CG1 VAL R 71 254.465 212.123 337.969 1.00 51.36 ATOM 82 CG2 VAL R 71 252.816 212.692 336.203 1.00 51.41 ATOM 83 N TYR R 72 252.960 209.943 340.016 1.00 52.27 ATOM 84 CA TYR R 72 253.257 209.623 341.413 1.00 52.82 ATOM 85 C TYR R 72 254.580 210.261 341.840 1.00 53.39 ATOM 86 O TYR R 72 255.595 210.125 341.148 1.00 53.46 ATOM 87 CB TYR R 72 253.296 208.105 341.627 1.00 52.67 ATOM 88 CG TYR R 72 251.998 207.391 341.307 1.00 52.54 ATOM 89 CD1 TYR R 72 251.001 207.240 342.279 1.00 52.50 ATOM 90 CD2 TYR R 72 251.767 206.855 340.033 1.00 52.50 ATOM 91 CE1 TYR R 72 249.810 206.583 341.990 1.00 52.48 ATOM 92 CE2 TYR R 72 250.578 206.198 339.734 1.00 52.51 ATOM 93 CZ TYR R 72 249.605 206.065 340.714 1.00 52.51 ATOM 94 OH TYR R 72 248.429 205.414 340.421 1.00 52.58 ATOM 95 N ILE R 73 254.554 210.958 342.976 1.00 54.14 ATOM 96 CA ILE R 73 255.727 211.668 343.503 1.00 55.00 ATOM 97 C ILE R 73 256.220 210.988 344.784 1.00 55.88 ATOM 98 O ILE R 73 255.431 210.710 345.694 1.00 56.08 ATOM 99 CB ILE R 73 255.456 213.179 343.765 1.00 54.92 ATOM 100 CG1 ILE R 73 254.635 213.826 342.639 1.00 54.93 ATOM 101 CG2 ILE R 73 256.758 213.952 343.938 1.00 54.89 ATOM 102 CD1 ILE R 73 253.172 214.029 342.974 1.00 55.06 ATOM 103 N ASN R 74 257.526 210.725 344.836 1.00 56.84 ATOM 104 CA ASN R 74 258.167 210.080 345.984 1.00 57.68 ATOM 105 C ASN R 74 258.588 211.085 347.052 1.00 58.36 ATOM 106 O ASN R 74 259.091 212.169 346.736 1.00 58.47 ATOM 107 CB ASN R 74 259.381 209.266 345.531 1.00 57.52 ATOM 108 N LEU R 75 258.375 210.711 348.313 1.00 59.23 ATOM 109 CA LEU R 75 258.800 211.506 349.463 1.00 60.11 ATOM 110 C LEU R 75 259.693 210.673 350.385 1.00 60.90 ATOM 111 O LEU R 75 259.211 209.804 351.122 1.00 61.08 ATOM 112 CB LEU R 75 257.588 212.066 350.216 1.00 59.90 ATOM 113 N ASP R 76 260.998 210.941 350.319 1.00 61.78 ATOM 114 CA ASP R 76 262.003 210.204 351.089 1.00 62.64 ATOM 115 C ASP R 76 262.956 211.129 351.849 1.00 63.25 ATOM 116 O ASP R 76 263.274 210.874 353.015 1.00 63.44 ATOM 117 CB ASP R 76 262.790 209.255 350.180 1.00 62.62 ATOM 118 N LYS R 77 263.407 212.191 351.180 1.00 63.89 ATOM 119 CA LYS R 77 264.289 213.192 351.780 1.00 64.53 ATOM 120 C LYS R 77 263.486 214.237 352.552 1.00 65.04 ATOM 121 O LYS R 77 262.450 214.715 352.073 1.00 65.25 ATOM 122 CB LYS R 77 265.147 213.865 350.707 1.00 64.46 ATOM 123 N GLU R 78 263.974 214.579 353.745 1.00 65.42 ATOM 124 CA GLU R 78 263.341 215.578 354.613 1.00 65.70 ATOM 125 C GLU R 78 263.503 217.000 354.071 1.00 65.88 ATOM 126 O GLU R 78 262.546 217.782 354.075 1.00 65.94 ATOM 127 CB GLU R 78 263.889 215.480 356.040 1.00 65.70 ATOM 128 N THR R 79 264.713 217.320 353.608 1.00 65.95 ATOM 129 CA THR R 79 265.013 218.610 352.986 1.00 65.99 ATOM 130 C THR R 79 264.548 218.632 351.530 1.00 66.03 ATOM 131 O THR R 79 264.704 217.639 350.809 1.00 66.14 ATOM 132 CB THR R 79 266.517 218.937 353.051 1.00 65.97 ATOM 133 N LYS R 80 263.991 219.776 351.124 1.00 65.95 ATOM 134 CA LYS R 80 263.411 220.020 349.785 1.00 65.79 ATOM 135 C LYS R 80 262.216 219.117 349.442 1.00 65.56 ATOM 136 O LYS R 80 262.379 217.923 349.163 1.00 65.56 ATOM 137 CB LYS R 80 264.479 219.998 348.677 1.00 65.84 ATOM 138 N THR R 81 261.023 219.710 349.469 1.00 65.09 ATOM 139 CA THR R 81 259.770 219.000 349.200 1.00 64.43 ATOM 140 C THR R 81 259.590 218.677 347.716 1.00 63.90 ATOM 141 O THR R 81 259.958 219.477 346.848 1.00 63.94 ATOM 142 CB THR R 81 258.551 219.800 349.700 1.00 64.47 ATOM 143 N GLY R 82 259.023 217.503 347.444 1.00 63.17 ATOM 144 CA GLY R 82 258.799 217.021 346.080 1.00 62.26 ATOM 145 C GLY R 82 257.564 217.608 345.423 1.00 61.54 ATOM 146 O GLY R 82 256.502 217.698 346.047 1.00 61.53 ATOM 147 N THR R 83 257.716 218.001 344.160 1.00 60.72 ATOM 148 CA THR R 83 256.630 218.572 343.358 1.00 59.92 ATOM 149 C THR R 83 256.427 217.787 342.062 1.00 59.36 ATOM 150 O THR R 83 257.386 217.247 341.501 1.00 59.38 ATOM 151 CB THR R 83 256.903 220.049 343.017 1.00 59.79 ATOM 152 N CYS R 84 255.177 217.735 341.594 1.00 58.69 ATOM 153 CA CYS R 84 254.817 217.026 340.359 1.00 58.07 ATOM 154 C CYS R 84 255.329 217.771 339.113 1.00 57.52 ATOM 155 O CYS R 84 255.724 218.939 339.197 1.00 57.56 ATOM 156 CB CYS R 84 253.294 216.776 340.293 1.00 58.25 ATOM 157 SG CYS R 84 252.393 217.665 338.998 1.00 58.54 ATOM 158 N GLY R 85 255.318 217.086 337.969 1.00 56.85 ATOM 159 CA GLY R 85 255.784 217.650 336.698 1.00 56.05 ATOM 160 C GLY R 85 254.921 218.761 336.121 1.00 55.56 ATOM 161 O GLY R 85 255.429 219.646 335.428 1.00 55.40 ATOM 162 N TYR R 86 253.621 218.716 336.418 1.00 55.33 ATOM 163 CA TYR R 86 252.641 219.665 335.881 1.00 55.43 ATOM 164 C TYR R 86 252.326 220.833 336.821 1.00 55.98 ATOM 165 O TYR R 86 252.098 221.955 336.360 1.00 55.95 ATOM 166 CB TYR R 86 251.342 218.940 335.505 1.00 54.96 ATOM 167 CG TYR R 86 251.512 217.788 334.537 1.00 54.74 ATOM 168 CD1 TYR R 86 251.671 218.015 333.162 1.00 54.65 ATOM 169 CD2 TYR R 86 251.500 216.466 334.991 1.00 54.60 ATOM 170 CE1 TYR R 86 251.824 216.956 332.273 1.00 54.36 ATOM 171 CE2 TYR R 86 251.650 215.403 334.109 1.00 54.36 ATOM 172 CZ TYR R 86 251.811 215.652 332.755 1.00 54.14 ATOM 173 OH TYR R 86 251.962 214.597 331.886 1.00 53.92 ATOM 174 N CYS R 87 252.310 220.561 338.127 1.00 56.89 ATOM 175 CA CYS R 87 251.962 221.557 339.148 1.00 57.70 ATOM 176 C CYS R 87 253.178 222.033 339.938 1.00 58.39 ATOM 177 O CYS R 87 254.192 221.335 340.022 1.00 58.50 ATOM 178 CB CYS R 87 250.922 220.997 340.126 1.00 57.86 ATOM 179 SG CYS R 87 249.532 220.113 339.386 1.00 57.98 ATOM 180 N GLY R 88 253.060 223.227 340.518 1.00 59.17 ATOM 181 CA GLY R 88 254.052 223.756 341.455 1.00 60.76 ATOM 182 C GLY R 88 253.735 223.421 342.905 1.00 61.97 ATOM 183 O GLY R 88 254.364 223.959 343.821 1.00 62.29 ATOM 184 N LEU R 89 252.761 222.530 343.104 1.00 62.90 ATOM 185 CA LEU R 89 252.322 222.096 344.431 1.00 63.95 ATOM 186 C LEU R 89 253.318 221.117 345.046 1.00 64.91 ATOM 187 O LEU R 89 253.729 220.148 344.399 1.00 65.01 ATOM 188 CB LEU R 89 250.924 221.464 344.362 1.00 63.79 ATOM 189 CG LEU R 89 249.729 222.306 343.891 1.00 63.78 ATOM 190 CD1 LEU R 89 248.636 221.408 343.331 1.00 63.85 ATOM 191 CD2 LEU R 89 249.180 223.199 344.996 1.00 63.83 ATOM 192 N GLN R 90 253.695 221.384 346.295 1.00 66.23 ATOM 193 CA GLN R 90 254.688 220.583 347.017 1.00 67.59 ATOM 194 C GLN R 90 254.054 219.722 348.111 1.00 68.39 ATOM 195 O GLN R 90 253.028 220.095 348.690 1.00 68.53 ATOM 196 CB GLN R 90 255.779 221.484 347.604 1.00 68.03 ATOM 197 CG GLN R 90 256.747 222.046 346.568 1.00 68.53 ATOM 198 CD GLN R 90 257.688 223.095 347.134 1.00 69.06 ATOM 199 OE1 GLN R 90 258.413 222.850 348.100 1.00 69.27 ATOM 200 NE2 GLN R 90 257.692 224.272 346.518 1.00 69.20 ATOM 201 N PHE R 91 254.680 218.576 348.382 1.00 69.28 ATOM 202 CA PHE R 91 254.190 217.613 349.373 1.00 70.05 ATOM 203 C PHE R 91 255.264 217.243 350.396 1.00 70.63 ATOM 204 O PHE R 91 256.436 217.074 350.044 1.00 70.72 ATOM 205 CB PHE R 91 253.661 216.347 348.686 1.00 70.01 ATOM 206 CG PHE R 91 252.498 216.590 347.760 1.00 69.90 ATOM 207 CD1 PHE R 91 251.190 216.650 348.253 1.00 69.94 ATOM 208 CD2 PHE R 91 252.704 216.749 346.386 1.00 69.77 ATOM 209 CE1 PHE R 91 250.116 216.872 347.398 1.00 69.85 ATOM 210 CE2 PHE R 91 251.632 216.971 345.527 1.00 69.77 ATOM 211 CZ PHE R 91 250.337 217.032 346.032 1.00 69.80 ATOM 212 N ARG R 92 254.847 217.121 351.656 1.00 71.37 ATOM 213 CA ARG R 92 255.737 216.753 352.764 1.00 72.05 ATOM 214 C ARG R 92 255.193 215.572 353.569 1.00 72.18 ATOM 215 O ARG R 92 253.974 215.426 353.717 1.00 72.30 ATOM 216 CB ARG R 92 255.988 217.953 353.684 1.00 72.64 ATOM 217 CG ARG R 92 256.959 218.980 353.121 1.00 73.42 ATOM 218 CD ARG R 92 257.164 220.140 354.081 1.00 74.15 ATOM 219 NE ARG R 92 258.074 221.148 353.534 1.00 74.82 ATOM 220 CZ ARG R 92 257.701 222.221 352.834 1.00 75.11 ATOM 221 NH1 ARG R 92 256.419 222.458 352.575 1.00 75.26 ATOM 222 NH2 ARG R 92 258.621 223.065 352.390 1.00 75.30 ATOM 223 N GLN R 93 256.115 214.754 354.085 1.00 72.32 ATOM 224 CA GLN R 93 255.826 213.511 354.833 1.00 72.48 ATOM 225 C GLN R 93 254.935 212.531 354.069 1.00 72.44 ATOM 226 O GLN R 93 255.259 211.350 353.946 1.00 72.35 ATOM 227 CB GLN R 93 255.245 213.799 356.227 1.00 72.68 ATOM 228 CG GLN R 93 256.265 214.275 357.253 1.00 72.89 ATOM 229 CD GLN R 93 255.720 214.289 358.672 1.00 72.99 ATOM 230 OE1 GLN R 93 254.697 214.914 358.957 1.00 73.10 ATOM 231 NE2 GLN R 93 256.415 213.607 359.575 1.00 72.85 ATOM 232 ZN ZN R 201 250.089 217.844 339.381 1.00 58.46 TER