HEADER RNA 05-DEC-16 5MKP TITLE Non redox thiolation in transfer RNAs occuring via sulfur activation TITLE 2 by a [4Fe-4S] cluster COMPND MOL_ID: 1; COMPND 2 MOLECULE: Uncharacterized protein; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.50 ANGSTORMS DBREF 5MKP A 1 310 UNP O58038 O58038_PYRH 1 310 SEQRES 1 A 30 SER MET LYS CYS LYS PHE CYS SER ARG GLU ALA TYR ILE SEQRES 2 A 30 LYS ILE HIS TYR PRO LYS MET TYR LEU CYS GLU GLU HIS SEQRES 3 A 30 PHE LYS GLU TYR ATOM 1 N SER A 0 -12.611 44.467 13.757 1.00113.07 ATOM 2 CA SER A 0 -13.757 43.628 14.098 1.00111.21 ATOM 3 C SER A 0 -14.594 43.293 12.867 1.00112.66 ATOM 4 O SER A 0 -14.822 42.122 12.585 1.00110.39 ATOM 5 CB SER A 0 -14.623 44.297 15.166 1.00116.42 ATOM 6 OG SER A 0 -15.325 45.427 14.670 1.00126.73 ATOM 7 N MET A 1 -15.038 44.322 12.131 1.00109.67 ATOM 8 CA MET A 1 -15.872 44.172 10.944 1.00108.34 ATOM 9 C MET A 1 -15.133 43.669 9.694 1.00105.40 ATOM 10 O MET A 1 -15.775 43.053 8.844 1.00103.64 ATOM 11 CB MET A 1 -16.611 45.493 10.638 1.00113.54 ATOM 12 CG MET A 1 -17.974 45.611 11.321 1.00118.43 ATOM 13 SD MET A 1 -19.250 44.479 10.675 1.00121.80 ATOM 14 CE MET A 1 -19.671 45.299 9.110 1.00119.96 ATOM 15 N LYS A 2 -13.811 43.922 9.571 1.00 98.72 ATOM 16 CA LYS A 2 -13.050 43.559 8.364 1.00 96.55 ATOM 17 C LYS A 2 -12.016 42.430 8.542 1.00 94.99 ATOM 18 O LYS A 2 -11.484 42.235 9.639 1.00 93.71 ATOM 19 CB LYS A 2 -12.374 44.809 7.750 1.00100.43 ATOM 20 CG LYS A 2 -13.345 45.938 7.375 1.00112.34 ATOM 21 CD LYS A 2 -14.153 45.639 6.112 1.00124.71 ATOM 22 CE LYS A 2 -15.319 46.575 5.907 1.00136.68 ATOM 23 NZ LYS A 2 -16.523 46.126 6.652 1.00142.53 ATOM 24 N CYS A 3 -11.730 41.705 7.425 1.00 87.54 ATOM 25 CA CYS A 3 -10.757 40.612 7.329 1.00 84.67 ATOM 26 C CYS A 3 -9.329 41.107 7.605 1.00 87.17 ATOM 27 O CYS A 3 -8.971 42.236 7.254 1.00 87.32 ATOM 28 CB CYS A 3 -10.853 39.927 5.963 1.00 84.09 ATOM 29 SG CYS A 3 -9.626 38.609 5.678 1.00 86.55 ATOM 30 N LYS A 4 -8.518 40.239 8.221 1.00 81.89 ATOM 31 CA LYS A 4 -7.119 40.507 8.554 1.00 81.78 ATOM 32 C LYS A 4 -6.240 40.614 7.282 1.00 85.04 ATOM 33 O LYS A 4 -5.385 41.495 7.209 1.00 86.60 ATOM 34 CB LYS A 4 -6.603 39.401 9.491 1.00 82.35 ATOM 35 CG LYS A 4 -5.207 39.636 10.036 1.00 94.00 ATOM 36 CD LYS A 4 -4.562 38.325 10.424 1.00100.50 ATOM 37 CE LYS A 4 -3.304 38.548 11.209 1.00110.29 ATOM 38 NZ LYS A 4 -2.456 37.330 11.260 1.00117.59 ATOM 39 N PHE A 5 -6.462 39.729 6.289 1.00 78.77 ATOM 40 CA PHE A 5 -5.672 39.679 5.054 1.00 78.42 ATOM 41 C PHE A 5 -6.227 40.504 3.883 1.00 82.15 ATOM 42 O PHE A 5 -5.500 40.696 2.902 1.00 83.16 ATOM 43 CB PHE A 5 -5.429 38.221 4.622 1.00 78.25 ATOM 44 CG PHE A 5 -4.683 37.447 5.684 1.00 78.38 ATOM 45 CD1 PHE A 5 -3.300 37.537 5.792 1.00 81.85 ATOM 46 CD2 PHE A 5 -5.368 36.665 6.607 1.00 77.90 ATOM 47 CE1 PHE A 5 -2.616 36.837 6.790 1.00 82.11 ATOM 48 CE2 PHE A 5 -4.681 35.974 7.607 1.00 79.62 ATOM 49 CZ PHE A 5 -3.312 36.067 7.696 1.00 78.58 ATOM 50 N CYS A 6 -7.475 41.009 3.977 1.00 77.88 ATOM 51 CA CYS A 6 -8.059 41.851 2.926 1.00 79.29 ATOM 52 C CYS A 6 -9.040 42.919 3.473 1.00 84.54 ATOM 53 O CYS A 6 -9.194 43.044 4.686 1.00 83.92 ATOM 54 CB CYS A 6 -8.685 41.014 1.814 1.00 78.57 ATOM 55 SG CYS A 6 -10.288 40.303 2.244 1.00 80.81 ATOM 56 N SER A 7 -9.675 43.695 2.555 1.00 82.31 ATOM 57 CA SER A 7 -10.616 44.771 2.865 0.50 83.03 ATOM 58 C SER A 7 -12.083 44.289 2.851 1.00 86.83 ATOM 59 O SER A 7 -13.000 45.090 3.082 1.00 88.29 ATOM 60 CB SER A 7 -10.412 45.928 1.890 0.50 87.06 ATOM 61 OG SER A 7 -11.180 47.066 2.242 0.50 93.77 ATOM 62 N ARG A 8 -12.308 42.977 2.590 1.00 81.58 ATOM 63 CA ARG A 8 -13.645 42.384 2.553 1.00 80.31 ATOM 64 C ARG A 8 -14.183 42.242 3.983 1.00 84.85 ATOM 65 O ARG A 8 -13.393 42.201 4.931 1.00 85.18 ATOM 66 CB ARG A 8 -13.625 41.005 1.863 1.00 78.50 ATOM 67 CG ARG A 8 -13.409 41.043 0.355 1.00 86.95 ATOM 68 CD ARG A 8 -13.101 39.671 -0.204 1.00 96.84 ATOM 69 NE ARG A 8 -12.646 39.753 -1.593 1.00116.85 ATOM 70 CZ ARG A 8 -11.370 39.760 -1.973 1.00134.90 ATOM 71 NH1 ARG A 8 -10.400 39.666 -1.071 1.00123.37 ATOM 72 NH2 ARG A 8 -11.056 39.849 -3.258 1.00120.66 ATOM 73 N GLU A 9 -15.526 42.168 4.136 1.00 81.54 ATOM 74 CA GLU A 9 -16.209 41.999 5.429 1.00 80.77 ATOM 75 C GLU A 9 -15.817 40.673 6.072 1.00 80.10 ATOM 76 O GLU A 9 -15.671 39.676 5.365 1.00 78.48 ATOM 77 CB GLU A 9 -17.746 42.053 5.264 1.00 82.64 ATOM 78 CG GLU A 9 -18.357 43.437 5.469 1.00 99.75 ATOM 79 CD GLU A 9 -18.428 44.363 4.262 1.00128.24 ATOM 80 OE1 GLU A 9 -18.767 43.886 3.154 1.00113.21 ATOM 81 OE2 GLU A 9 -18.211 45.583 4.444 1.00129.08 ATOM 82 N ALA A 10 -15.635 40.664 7.402 1.00 74.85 ATOM 83 CA ALA A 10 -15.288 39.454 8.141 1.00 72.42 ATOM 84 C ALA A 10 -16.489 38.500 8.187 1.00 74.92 ATOM 85 O ALA A 10 -17.635 38.927 8.345 1.00 75.22 ATOM 86 CB ALA A 10 -14.816 39.802 9.544 1.00 73.31 ATOM 87 N TYR A 11 -16.222 37.219 7.973 1.00 69.64 ATOM 88 CA TYR A 11 -17.233 36.171 7.967 1.00 68.09 ATOM 89 C TYR A 11 -17.317 35.474 9.320 1.00 73.15 ATOM 90 O TYR A 11 -18.414 35.224 9.824 1.00 73.16 ATOM 91 CB TYR A 11 -16.916 35.174 6.840 1.00 67.28 ATOM 92 CG TYR A 11 -17.771 33.927 6.787 1.00 65.24 ATOM 93 CD1 TYR A 11 -19.145 34.010 6.584 1.00 67.14 ATOM 94 CD2 TYR A 11 -17.191 32.661 6.818 1.00 63.91 ATOM 95 CE1 TYR A 11 -19.934 32.864 6.496 1.00 67.56 ATOM 96 CE2 TYR A 11 -17.968 31.508 6.728 1.00 63.72 ATOM 97 CZ TYR A 11 -19.342 31.614 6.565 1.00 70.02 ATOM 98 OH TYR A 11 -20.126 30.492 6.473 1.00 63.45 ATOM 99 N ILE A 12 -16.154 35.178 9.910 1.00 70.08 ATOM 100 CA ILE A 12 -16.015 34.467 11.179 1.00 69.09 ATOM 101 C ILE A 12 -14.773 34.982 11.943 1.00 76.19 ATOM 102 O ILE A 12 -13.905 35.633 11.349 1.00 75.09 ATOM 103 CB ILE A 12 -15.935 32.940 10.843 1.00 70.12 ATOM 104 CG1 ILE A 12 -16.048 32.049 12.116 1.00 69.03 ATOM 105 CG2 ILE A 12 -14.686 32.612 9.995 1.00 69.94 ATOM 106 CD1 ILE A 12 -16.116 30.563 11.915 1.00 67.77 ATOM 107 N LYS A 13 -14.695 34.679 13.258 1.00 76.56 ATOM 108 CA LYS A 13 -13.559 35.043 14.106 1.00 78.39 ATOM 109 C LYS A 13 -12.841 33.756 14.530 1.00 84.05 ATOM 110 O LYS A 13 -13.448 32.875 15.145 1.00 82.35 ATOM 111 CB LYS A 13 -14.013 35.877 15.313 1.00 81.79 ATOM 112 CG LYS A 13 -12.883 36.546 16.078 1.00 94.91 ATOM 113 CD LYS A 13 -13.377 37.036 17.434 1.00105.83 ATOM 114 CE LYS A 13 -12.257 37.518 18.325 1.00119.75 ATOM 115 NZ LYS A 13 -12.704 37.662 19.737 1.00129.07 ATOM 116 N ILE A 14 -11.561 33.642 14.130 1.00 83.10 ATOM 117 CA ILE A 14 -10.658 32.518 14.389 1.00 82.99 ATOM 118 C ILE A 14 -9.784 32.839 15.601 1.00 91.73 ATOM 119 O ILE A 14 -9.081 33.857 15.620 1.00 92.44 ATOM 120 CB ILE A 14 -9.848 32.150 13.105 1.00 85.50 ATOM 121 CG1 ILE A 14 -10.766 31.657 11.947 1.00 84.58 ATOM 122 CG2 ILE A 14 -8.706 31.168 13.381 1.00 85.90 ATOM 123 CD1 ILE A 14 -11.811 30.540 12.250 1.00 89.46 ATOM 124 N HIS A 15 -9.852 31.965 16.617 1.00 90.79 ATOM 125 CA HIS A 15 -9.155 32.107 17.898 1.00 91.97 ATOM 126 C HIS A 15 -7.648 31.846 17.839 1.00 98.04 ATOM 127 O HIS A 15 -6.897 32.569 18.500 1.00 98.37 ATOM 128 CB HIS A 15 -9.818 31.227 18.963 1.00 91.88 ATOM 129 CG HIS A 15 -11.319 31.234 18.905 1.00 94.86 ATOM 130 ND1 HIS A 15 -12.048 32.401 19.092 1.00 97.53 ATOM 131 CD2 HIS A 15 -12.181 30.213 18.686 1.00 95.44 ATOM 132 CE1 HIS A 15 -13.319 32.053 18.974 1.00 96.27 ATOM 133 NE2 HIS A 15 -13.450 30.747 18.735 1.00 95.33 ATOM 134 N TYR A 16 -7.201 30.826 17.060 1.00 95.64 ATOM 135 CA TYR A 16 -5.779 30.460 16.975 1.00 97.12 ATOM 136 C TYR A 16 -5.245 30.354 15.525 1.00100.79 ATOM 137 O TYR A 16 -5.500 29.361 14.834 1.00 99.62 ATOM 138 CB TYR A 16 -5.479 29.179 17.786 1.00 99.04 ATOM 139 CG TYR A 16 -6.169 29.159 19.134 1.00102.46 ATOM 140 CD1 TYR A 16 -5.680 29.910 20.201 1.00105.80 ATOM 141 CD2 TYR A 16 -7.353 28.448 19.324 1.00102.62 ATOM 142 CE1 TYR A 16 -6.344 29.942 21.426 1.00107.47 ATOM 143 CE2 TYR A 16 -8.012 28.452 20.554 1.00103.78 ATOM 144 CZ TYR A 16 -7.505 29.205 21.600 1.00113.86 ATOM 145 OH TYR A 16 -8.154 29.221 22.808 1.00117.40 ATOM 146 N PRO A 17 -4.482 31.368 15.049 1.00 97.96 ATOM 147 CA PRO A 17 -4.124 32.632 15.732 1.00 98.60 ATOM 148 C PRO A 17 -5.327 33.580 15.814 1.00100.13 ATOM 149 O PRO A 17 -6.326 33.336 15.132 1.00 98.19 ATOM 150 CB PRO A 17 -2.994 33.211 14.848 1.00101.63 ATOM 151 CG PRO A 17 -2.718 32.188 13.758 1.00105.37 ATOM 152 CD PRO A 17 -3.955 31.341 13.671 1.00 99.40 ATOM 153 N LYS A 18 -5.254 34.637 16.658 1.00 96.42 ATOM 154 CA LYS A 18 -6.337 35.625 16.783 1.00 95.67 ATOM 155 C LYS A 18 -6.483 36.378 15.450 1.00 96.59 ATOM 156 O LYS A 18 -5.518 37.010 14.993 1.00 97.24 ATOM 157 CB LYS A 18 -6.063 36.609 17.931 1.00100.19 ATOM 158 CG LYS A 18 -6.435 36.098 19.316 1.00119.02 ATOM 159 CD LYS A 18 -6.188 37.192 20.351 1.00131.94 ATOM 160 CE LYS A 18 -6.636 36.815 21.738 1.00145.30 ATOM 161 NZ LYS A 18 -6.258 37.854 22.733 1.00158.44 ATOM 162 N MET A 19 -7.666 36.244 14.792 1.00 89.44 ATOM 163 CA MET A 19 -7.944 36.860 13.483 1.00 88.10 ATOM 164 C MET A 19 -9.396 36.801 13.027 1.00 89.89 ATOM 165 O MET A 19 -10.077 35.797 13.216 1.00 87.63 ATOM 166 CB MET A 19 -7.068 36.244 12.369 1.00 89.45 ATOM 167 CG MET A 19 -7.146 34.732 12.300 1.00 90.67 ATOM 168 SD MET A 19 -5.971 33.956 11.190 1.00 94.53 ATOM 169 CE MET A 19 -4.465 34.717 11.697 1.00 93.21 ATOM 170 N TYR A 20 -9.827 37.866 12.346 1.00 86.91 ATOM 171 CA TYR A 20 -11.128 37.962 11.699 1.00 85.66 ATOM 172 C TYR A 20 -10.844 37.661 10.228 1.00 85.24 ATOM 173 O TYR A 20 -9.914 38.232 9.630 1.00 85.60 ATOM 174 CB TYR A 20 -11.740 39.367 11.871 1.00 89.19 ATOM 175 CG TYR A 20 -12.466 39.579 13.181 1.00 91.78 ATOM 176 CD1 TYR A 20 -13.810 39.239 13.320 1.00 93.20 ATOM 177 CD2 TYR A 20 -11.821 40.151 14.275 1.00 93.72 ATOM 178 CE1 TYR A 20 -14.497 39.470 14.512 1.00 94.99 ATOM 179 CE2 TYR A 20 -12.491 40.371 15.478 1.00 95.02 ATOM 180 CZ TYR A 20 -13.832 40.038 15.590 1.00102.44 ATOM 181 OH TYR A 20 -14.495 40.245 16.781 1.00103.07 ATOM 182 N LEU A 21 -11.589 36.710 9.669 1.00 77.41 ATOM 183 CA LEU A 21 -11.382 36.289 8.290 1.00 74.94 ATOM 184 C LEU A 21 -12.644 36.405 7.476 1.00 76.23 ATOM 185 O LEU A 21 -13.732 36.064 7.950 1.00 74.92 ATOM 186 CB LEU A 21 -10.862 34.829 8.232 1.00 73.01 ATOM 187 CG LEU A 21 -9.519 34.507 8.900 1.00 76.52 ATOM 188 CD1 LEU A 21 -9.255 33.034 8.867 1.00 74.56 ATOM 189 CD2 LEU A 21 -8.363 35.244 8.234 1.00 80.24 ATOM 190 N CYS A 22 -12.483 36.823 6.216 1.00 71.47 ATOM 191 CA CYS A 22 -13.560 36.912 5.245 1.00 69.91 ATOM 192 C CYS A 22 -13.874 35.475 4.778 1.00 72.84 ATOM 193 O CYS A 22 -13.111 34.547 5.073 1.00 72.52 ATOM 194 CB CYS A 22 -13.143 37.803 4.079 1.00 70.92 ATOM 195 SG CYS A 22 -11.881 37.068 3.007 1.00 74.41 ATOM 196 N GLU A 23 -14.971 35.296 4.036 1.00 68.41 ATOM 197 CA GLU A 23 -15.411 34.003 3.518 1.00 66.54 ATOM 198 C GLU A 23 -14.300 33.226 2.795 1.00 69.59 ATOM 199 O GLU A 23 -14.141 32.022 3.017 1.00 66.96 ATOM 200 CB GLU A 23 -16.579 34.230 2.559 1.00 68.34 ATOM 201 CG GLU A 23 -17.793 33.379 2.855 1.00 81.59 ATOM 202 CD GLU A 23 -19.011 33.824 2.071 1.00107.56 ATOM 203 OE1 GLU A 23 -19.242 33.266 0.973 1.00109.35 ATOM 204 OE2 GLU A 23 -19.706 34.760 2.531 1.00 94.53 ATOM 205 N GLU A 24 -13.539 33.915 1.930 1.00 68.11 ATOM 206 CA GLU A 24 -12.511 33.266 1.126 1.00 67.89 ATOM 207 C GLU A 24 -11.242 32.979 1.885 1.00 70.70 ATOM 208 O GLU A 24 -10.631 31.938 1.643 1.00 70.74 ATOM 209 CB GLU A 24 -12.238 34.033 -0.168 1.00 70.81 ATOM 210 CG GLU A 24 -13.208 33.654 -1.278 1.00 79.92 ATOM 211 CD GLU A 24 -13.117 32.253 -1.867 1.00105.11 ATOM 212 OE1 GLU A 24 -12.227 31.467 -1.460 1.00 97.21 ATOM 213 OE2 GLU A 24 -13.941 31.949 -2.760 1.00101.96 ATOM 214 N HIS A 25 -10.861 33.857 2.822 1.00 66.70 ATOM 215 CA HIS A 25 -9.686 33.637 3.671 1.00 65.67 ATOM 216 C HIS A 25 -9.942 32.596 4.745 1.00 66.13 ATOM 217 O HIS A 25 -8.997 31.978 5.227 1.00 65.13 ATOM 218 CB HIS A 25 -9.141 34.940 4.257 1.00 67.52 ATOM 219 CG HIS A 25 -8.241 35.628 3.302 1.00 72.07 ATOM 220 ND1 HIS A 25 -8.644 36.762 2.636 1.00 75.43 ATOM 221 CD2 HIS A 25 -7.015 35.267 2.857 1.00 74.21 ATOM 222 CE1 HIS A 25 -7.642 37.083 1.832 1.00 75.92 ATOM 223 NE2 HIS A 25 -6.639 36.211 1.926 1.00 75.74 ATOM 224 N PHE A 26 -11.221 32.390 5.107 1.00 61.86 ATOM 225 CA PHE A 26 -11.627 31.354 6.049 1.00 59.94 ATOM 226 C PHE A 26 -11.471 29.994 5.360 1.00 63.10 ATOM 227 O PHE A 26 -10.862 29.092 5.935 1.00 60.91 ATOM 228 CB PHE A 26 -13.074 31.550 6.545 1.00 61.06 ATOM 229 CG PHE A 26 -13.553 30.357 7.347 1.00 60.93 ATOM 230 CD1 PHE A 26 -12.940 30.016 8.556 1.00 62.19 ATOM 231 CD2 PHE A 26 -14.547 29.519 6.850 1.00 61.35 ATOM 232 CE1 PHE A 26 -13.335 28.881 9.264 1.00 61.33 ATOM 233 CE2 PHE A 26 -14.943 28.387 7.565 1.00 62.72 ATOM 234 CZ PHE A 26 -14.331 28.075 8.766 1.00 60.08 ATOM 235 N LYS A 27 -12.014 29.866 4.116 1.00 61.18 ATOM 236 CA LYS A 27 -11.928 28.664 3.281 1.00 60.26 ATOM 237 C LYS A 27 -10.469 28.204 3.193 1.00 65.76 ATOM 238 O LYS A 27 -10.197 27.021 3.403 1.00 63.99 ATOM 239 CB LYS A 27 -12.487 28.946 1.876 1.00 61.94 ATOM 240 CG LYS A 27 -14.006 28.826 1.786 1.00 69.92 ATOM 241 CD LYS A 27 -14.593 29.452 0.522 1.00 72.71 ATOM 242 CE LYS A 27 -14.282 28.657 -0.712 1.00 80.67 ATOM 243 NZ LYS A 27 -14.686 29.369 -1.941 1.00 93.03 ATOM 244 N GLU A 28 -9.535 29.167 2.935 1.00 64.77 ATOM 245 CA GLU A 28 -8.092 28.943 2.823 1.00 65.27 ATOM 246 C GLU A 28 -7.536 28.448 4.158 1.00 68.49 ATOM 247 O GLU A 28 -6.897 27.387 4.185 1.00 68.40 ATOM 248 CB GLU A 28 -7.362 30.214 2.335 1.00 68.25 ATOM 249 CG GLU A 28 -5.891 29.969 2.026 1.00 81.30 ATOM 250 CD GLU A 28 -5.016 31.175 1.732 1.00115.48 ATOM 251 OE1 GLU A 28 -4.153 31.068 0.829 1.00115.35 ATOM 252 OE2 GLU A 28 -5.155 32.207 2.427 1.00114.61 ATOM 253 N TYR A 29 -7.814 29.192 5.259 1.00 63.33 ATOM 254 CA TYR A 29 -7.415 28.838 6.615 1.00 63.23 ATOM 255 C TYR A 29 -7.787 27.392 6.909 1.00 66.54 ATOM 256 O TYR A 29 -6.928 26.616 7.337 1.00 67.32 ATOM 257 CB TYR A 29 -8.092 29.769 7.644 1.00 65.61 ATOM 258 CG TYR A 29 -8.125 29.223 9.061 1.00 69.22 ATOM 259 CD1 TYR A 29 -7.002 29.293 9.884 1.00 72.37 ATOM 260 CD2 TYR A 29 -9.283 28.647 9.583 1.00 69.21 ATOM 261 CE1 TYR A 29 -7.021 28.778 11.179 1.00 73.07 ATOM 262 CE2 TYR A 29 -9.309 28.115 10.872 1.00 69.48 ATOM 263 CZ TYR A 29 -8.173 28.180 11.665 1.00 78.40 ATOM 264 OH TYR A 29 -8.204 27.701 12.953 1.00 79.09 ATOM 265 ZN ZN A 401 -9.930 38.401 3.391 1.00 76.17 TER