HEADER RIBOSOME 31-DEC-69 5NDG TITLE Crystal structure of geneticin (G418) bound to the yeast 80S ribosome COMPND MOL_ID: 77; COMPND 2 MOLECULE: 60S ribosomal protein L41-A; COMPND 3 CHAIN: Q1, q1; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.70 ANGSTORMS DBREF 5NDG Q 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 Q1 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 Q1 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET Q 1 -46.473 -3.536 71.688 1.00122.42 ATOM 2 CA MET Q 1 -45.646 -4.087 72.750 1.00122.63 ATOM 3 C MET Q 1 -46.154 -3.624 74.102 1.00123.46 ATOM 4 O MET Q 1 -46.649 -2.507 74.218 1.00123.77 ATOM 5 CB MET Q 1 -44.195 -3.666 72.550 1.00122.20 ATOM 6 CG MET Q 1 -43.960 -2.156 72.547 1.00122.28 ATOM 7 SD MET Q 1 -42.208 -1.714 72.642 1.00121.91 ATOM 8 CE MET Q 1 -41.534 -3.154 73.465 1.00121.99 ATOM 9 N ARG Q 2 -46.020 -4.474 75.120 1.00125.54 ATOM 10 CA ARG Q 2 -46.460 -4.121 76.466 1.00126.37 ATOM 11 C ARG Q 2 -45.918 -2.746 76.834 1.00126.54 ATOM 12 O ARG Q 2 -44.792 -2.404 76.481 1.00126.09 ATOM 13 CB ARG Q 2 -45.981 -5.194 77.456 1.00126.66 ATOM 14 CG ARG Q 2 -46.053 -4.849 78.936 1.00127.50 ATOM 15 CD ARG Q 2 -46.813 -5.931 79.696 1.00128.04 ATOM 16 NE ARG Q 2 -45.996 -6.738 80.611 1.00128.27 ATOM 17 CZ ARG Q 2 -45.985 -6.596 81.940 1.00129.04 ATOM 18 NH1 ARG Q 2 -46.743 -5.664 82.509 1.00129.63 ATOM 19 NH2 ARG Q 2 -45.225 -7.383 82.702 1.00129.22 ATOM 20 N ALA Q 3 -46.749 -1.925 77.481 1.00129.04 ATOM 21 CA ALA Q 3 -46.381 -0.522 77.677 1.00129.20 ATOM 22 C ALA Q 3 -45.399 -0.304 78.827 1.00129.56 ATOM 23 O ALA Q 3 -44.734 0.741 78.878 1.00129.53 ATOM 24 CB ALA Q 3 -47.635 0.319 77.900 1.00129.79 ATOM 25 N LYS Q 4 -45.309 -1.253 79.754 1.00129.62 ATOM 26 CA LYS Q 4 -44.217 -1.236 80.721 1.00129.84 ATOM 27 C LYS Q 4 -42.871 -1.472 80.034 1.00129.07 ATOM 28 O LYS Q 4 -41.849 -0.901 80.435 1.00129.07 ATOM 29 CB LYS Q 4 -44.494 -2.277 81.815 1.00130.43 ATOM 30 CG LYS Q 4 -43.278 -3.030 82.330 1.00130.32 ATOM 31 CD LYS Q 4 -43.397 -3.385 83.816 1.00131.19 ATOM 32 CE LYS Q 4 -44.170 -4.667 84.047 1.00131.44 ATOM 33 NZ LYS Q 4 -43.850 -5.301 85.360 1.00132.10 ATOM 34 N TRP Q 5 -42.850 -2.302 78.994 1.00127.67 ATOM 35 CA TRP Q 5 -41.643 -2.519 78.215 1.00126.92 ATOM 36 C TRP Q 5 -41.421 -1.493 77.119 1.00126.39 ATOM 37 O TRP Q 5 -40.306 -1.404 76.595 1.00125.84 ATOM 38 CB TRP Q 5 -41.659 -3.895 77.561 1.00126.46 ATOM 39 CG TRP Q 5 -41.885 -5.025 78.475 1.00126.91 ATOM 40 CD1 TRP Q 5 -42.588 -6.153 78.197 1.00126.87 ATOM 41 CD2 TRP Q 5 -41.409 -5.166 79.814 1.00127.50 ATOM 42 NE1 TRP Q 5 -42.580 -6.994 79.274 1.00127.40 ATOM 43 CE2 TRP Q 5 -41.858 -6.411 80.279 1.00127.80 ATOM 44 CE3 TRP Q 5 -40.642 -4.365 80.663 1.00127.83 ATOM 45 CZ2 TRP Q 5 -41.574 -6.872 81.546 1.00128.41 ATOM 46 CZ3 TRP Q 5 -40.363 -4.825 81.920 1.00128.44 ATOM 47 CH2 TRP Q 5 -40.830 -6.067 82.352 1.00128.73 ATOM 48 N ARG Q 6 -42.441 -0.752 76.713 1.00131.21 ATOM 49 CA ARG Q 6 -42.136 0.397 75.877 1.00130.84 ATOM 50 C ARG Q 6 -41.456 1.465 76.708 1.00131.21 ATOM 51 O ARG Q 6 -40.482 2.086 76.260 1.00130.80 ATOM 52 CB ARG Q 6 -43.396 0.947 75.230 1.00130.94 ATOM 53 CG ARG Q 6 -43.225 2.342 74.650 1.00130.79 ATOM 54 CD ARG Q 6 -42.780 2.317 73.198 1.00129.97 ATOM 55 NE ARG Q 6 -43.409 3.429 72.492 1.00129.99 ATOM 56 CZ ARG Q 6 -42.797 4.556 72.140 1.00129.84 ATOM 57 NH1 ARG Q 6 -41.496 4.726 72.387 1.00129.62 ATOM 58 NH2 ARG Q 6 -43.494 5.507 71.517 1.00129.91 ATOM 59 N LYS Q 7 -41.948 1.670 77.932 1.00130.25 ATOM 60 CA LYS Q 7 -41.303 2.570 78.884 1.00130.68 ATOM 61 C LYS Q 7 -39.828 2.221 79.063 1.00130.34 ATOM 62 O LYS Q 7 -38.943 3.021 78.733 1.00130.04 ATOM 63 CB LYS Q 7 -42.043 2.504 80.213 1.00131.60 ATOM 64 CG LYS Q 7 -41.788 3.642 81.183 1.00132.22 ATOM 65 CD LYS Q 7 -42.623 3.397 82.452 1.00133.14 ATOM 66 CE LYS Q 7 -42.636 4.575 83.408 1.00133.88 ATOM 67 NZ LYS Q 7 -43.683 4.377 84.421 1.00134.74 ATOM 68 N LYS Q 8 -39.544 1.016 79.573 1.00128.73 ATOM 69 CA LYS Q 8 -38.173 0.540 79.721 1.00128.40 ATOM 70 C LYS Q 8 -37.389 0.749 78.433 1.00127.54 ATOM 71 O LYS Q 8 -36.192 1.043 78.472 1.00127.29 ATOM 72 CB LYS Q 8 -38.143 -0.939 80.120 1.00128.46 ATOM 73 CG LYS Q 8 -36.785 -1.585 79.905 1.00127.94 ATOM 74 CD LYS Q 8 -36.828 -3.082 80.078 1.00127.92 ATOM 75 CE LYS Q 8 -36.802 -3.456 81.531 1.00128.69 ATOM 76 NZ LYS Q 8 -35.531 -4.146 81.861 1.00128.53 ATOM 77 N ARG Q 9 -38.053 0.633 77.283 1.00127.87 ATOM 78 CA ARG Q 9 -37.348 0.854 76.027 1.00127.09 ATOM 79 C ARG Q 9 -36.837 2.283 75.930 1.00127.08 ATOM 80 O ARG Q 9 -35.648 2.514 75.670 1.00126.69 ATOM 81 CB ARG Q 9 -38.236 0.533 74.828 1.00126.68 ATOM 82 CG ARG Q 9 -37.404 0.396 73.572 1.00125.87 ATOM 83 CD ARG Q 9 -38.094 0.854 72.286 1.00125.49 ATOM 84 NE ARG Q 9 -39.049 -0.103 71.718 1.00125.36 ATOM 85 CZ ARG Q 9 -38.816 -1.397 71.479 1.00125.06 ATOM 86 NH1 ARG Q 9 -37.656 -1.968 71.780 1.00124.86 ATOM 87 NH2 ARG Q 9 -39.772 -2.141 70.943 1.00124.98 ATOM 88 N THR Q 10 -37.715 3.263 76.131 1.00126.80 ATOM 89 CA THR Q 10 -37.263 4.642 76.031 1.00126.83 ATOM 90 C THR Q 10 -36.482 5.086 77.255 1.00127.30 ATOM 91 O THR Q 10 -35.843 6.142 77.216 1.00127.28 ATOM 92 CB THR Q 10 -38.442 5.587 75.787 1.00127.17 ATOM 93 OG1 THR Q 10 -39.260 5.645 76.961 1.00127.97 ATOM 94 CG2 THR Q 10 -39.265 5.089 74.610 1.00126.73 ATOM 95 N ARG Q 11 -36.487 4.300 78.329 1.00128.72 ATOM 96 CA ARG Q 11 -35.553 4.579 79.410 1.00129.09 ATOM 97 C ARG Q 11 -34.127 4.247 78.980 1.00128.45 ATOM 98 O ARG Q 11 -33.224 5.082 79.112 1.00128.41 ATOM 99 CB ARG Q 11 -35.944 3.812 80.676 1.00129.76 ATOM 100 CG ARG Q 11 -36.318 4.712 81.880 1.00130.64 ATOM 101 CD ARG Q 11 -37.736 5.297 81.756 1.00131.03 ATOM 102 NE ARG Q 11 -38.320 5.706 83.033 1.00131.97 ATOM 103 CZ ARG Q 11 -38.667 4.863 84.002 1.00132.50 ATOM 104 NH1 ARG Q 11 -38.472 3.554 83.857 1.00132.18 ATOM 105 NH2 ARG Q 11 -39.205 5.335 85.122 1.00133.38 ATOM 106 N ARG Q 12 -33.906 3.028 78.466 1.00127.60 ATOM 107 CA ARG Q 12 -32.638 2.724 77.808 1.00126.92 ATOM 108 C ARG Q 12 -32.317 3.778 76.760 1.00126.44 ATOM 109 O ARG Q 12 -31.205 4.312 76.715 1.00126.23 ATOM 110 CB ARG Q 12 -32.684 1.354 77.139 1.00126.44 ATOM 111 CG ARG Q 12 -32.743 0.145 78.037 1.00126.78 ATOM 112 CD ARG Q 12 -32.801 -1.102 77.151 1.00126.23 ATOM 113 NE ARG Q 12 -33.153 -2.329 77.863 1.00126.58 ATOM 114 CZ ARG Q 12 -33.479 -3.474 77.261 1.00126.27 ATOM 115 NH1 ARG Q 12 -33.503 -3.550 75.936 1.00125.61 ATOM 116 NH2 ARG Q 12 -33.791 -4.543 77.984 1.00126.65 ATOM 117 N LEU Q 13 -33.300 4.095 75.915 1.00124.82 ATOM 118 CA LEU Q 13 -33.064 5.007 74.802 1.00124.35 ATOM 119 C LEU Q 13 -32.586 6.375 75.279 1.00124.67 ATOM 120 O LEU Q 13 -31.667 6.954 74.688 1.00124.26 ATOM 121 CB LEU Q 13 -34.333 5.132 73.964 1.00124.29 ATOM 122 CG LEU Q 13 -34.313 6.044 72.735 1.00123.85 ATOM 123 CD1 LEU Q 13 -34.471 7.501 73.119 1.00124.31 ATOM 124 CD2 LEU Q 13 -33.051 5.838 71.912 1.00123.15 ATOM 125 N LYS Q 14 -33.229 6.934 76.303 1.00126.86 ATOM 126 CA LYS Q 14 -32.758 8.207 76.848 1.00127.22 ATOM 127 C LYS Q 14 -31.398 8.037 77.518 1.00127.19 ATOM 128 O LYS Q 14 -30.461 8.806 77.255 1.00126.96 ATOM 129 CB LYS Q 14 -33.772 8.780 77.842 1.00128.08 ATOM 130 CG LYS Q 14 -35.037 9.340 77.229 1.00128.20 ATOM 131 CD LYS Q 14 -35.982 9.782 78.329 1.00129.09 ATOM 132 CE LYS Q 14 -36.173 8.676 79.390 1.00129.49 ATOM 133 NZ LYS Q 14 -37.305 8.945 80.369 1.00130.37 ATOM 134 N ARG Q 15 -31.281 7.023 78.384 1.00128.32 ATOM 135 CA ARG Q 15 -30.044 6.769 79.116 1.00128.37 ATOM 136 C ARG Q 15 -28.849 6.684 78.169 1.00127.58 ATOM 137 O ARG Q 15 -27.762 7.198 78.472 1.00127.56 ATOM 138 CB ARG Q 15 -30.217 5.490 79.951 1.00128.66 ATOM 139 CG ARG Q 15 -28.935 4.828 80.425 1.00128.53 ATOM 140 CD ARG Q 15 -29.132 3.985 81.684 1.00129.15 ATOM 141 NE ARG Q 15 -30.214 3.005 81.581 1.00129.23 ATOM 142 CZ ARG Q 15 -30.359 1.956 82.393 1.00129.61 ATOM 143 NH1 ARG Q 15 -29.478 1.739 83.367 1.00129.93 ATOM 144 NH2 ARG Q 15 -31.379 1.115 82.226 1.00129.66 ATOM 145 N LYS Q 16 -29.039 6.089 76.990 1.00124.19 ATOM 146 CA LYS Q 16 -27.938 6.017 76.040 1.00123.47 ATOM 147 C LYS Q 16 -27.598 7.389 75.487 1.00123.33 ATOM 148 O LYS Q 16 -26.421 7.725 75.329 1.00123.04 ATOM 149 CB LYS Q 16 -28.271 5.065 74.904 1.00122.88 ATOM 150 CG LYS Q 16 -27.107 4.852 73.963 1.00122.16 ATOM 151 CD LYS Q 16 -27.488 4.008 72.752 1.00121.59 ATOM 152 CE LYS Q 16 -26.245 3.373 72.165 1.00121.00 ATOM 153 NZ LYS Q 16 -25.076 4.278 72.395 1.00120.96 ATOM 154 N ARG Q 17 -28.611 8.199 75.185 1.00122.83 ATOM 155 CA ARG Q 17 -28.319 9.537 74.695 1.00122.75 ATOM 156 C ARG Q 17 -27.705 10.421 75.773 1.00123.27 ATOM 157 O ARG Q 17 -27.136 11.469 75.451 1.00123.17 ATOM 158 CB ARG Q 17 -29.578 10.166 74.106 1.00122.89 ATOM 159 CG ARG Q 17 -30.006 9.446 72.846 1.00122.29 ATOM 160 CD ARG Q 17 -30.869 10.294 71.912 1.00122.25 ATOM 161 NE ARG Q 17 -32.298 10.222 72.199 1.00122.71 ATOM 162 CZ ARG Q 17 -33.222 10.094 71.259 1.00122.51 ATOM 163 NH1 ARG Q 17 -32.864 9.997 69.985 1.00121.85 ATOM 164 NH2 ARG Q 17 -34.497 10.053 71.593 1.00122.96 ATOM 165 N ARG Q 18 -27.770 10.020 77.039 1.00123.80 ATOM 166 CA ARG Q 18 -26.950 10.709 78.025 1.00124.22 ATOM 167 C ARG Q 18 -25.469 10.436 77.771 1.00123.70 ATOM 168 O ARG Q 18 -24.692 11.374 77.545 1.00123.58 ATOM 169 CB ARG Q 18 -27.368 10.309 79.438 1.00124.96 ATOM 170 CG ARG Q 18 -27.988 11.477 80.204 1.00125.71 ATOM 171 CD ARG Q 18 -28.608 11.047 81.508 1.00126.48 ATOM 172 NE ARG Q 18 -29.655 10.056 81.285 1.00126.44 ATOM 173 CZ ARG Q 18 -30.083 9.203 82.210 1.00126.91 ATOM 174 NH1 ARG Q 18 -29.546 9.229 83.425 1.00127.45 ATOM 175 NH2 ARG Q 18 -31.040 8.322 81.918 1.00126.83 ATOM 176 N LYS Q 19 -25.071 9.158 77.748 1.00124.68 ATOM 177 CA LYS Q 19 -23.668 8.802 77.497 1.00124.20 ATOM 178 C LYS Q 19 -23.147 9.462 76.225 1.00123.57 ATOM 179 O LYS Q 19 -21.998 9.922 76.172 1.00123.37 ATOM 180 CB LYS Q 19 -23.513 7.275 77.392 1.00123.89 ATOM 181 CG LYS Q 19 -22.279 6.658 78.087 1.00123.90 ATOM 182 CD LYS Q 19 -22.711 5.569 79.079 1.00124.36 ATOM 183 CE LYS Q 19 -21.782 5.476 80.303 1.00124.79 ATOM 184 NZ LYS Q 19 -22.443 4.861 81.517 1.00125.50 ATOM 185 N VAL Q 20 -23.997 9.547 75.203 1.00118.67 ATOM 186 CA VAL Q 20 -23.555 9.955 73.878 1.00118.04 ATOM 187 C VAL Q 20 -23.317 11.459 73.823 1.00118.22 ATOM 188 O VAL Q 20 -22.289 11.921 73.316 1.00117.85 ATOM 189 CB VAL Q 20 -24.585 9.482 72.841 1.00117.71 ATOM 190 CG1 VAL Q 20 -24.372 10.147 71.497 1.00117.20 ATOM 191 CG2 VAL Q 20 -24.513 7.968 72.711 1.00117.40 ATOM 192 N ARG Q 21 -24.237 12.248 74.359 1.00118.21 ATOM 193 CA ARG Q 21 -23.998 13.684 74.371 1.00118.44 ATOM 194 C ARG Q 21 -22.786 14.027 75.227 1.00118.62 ATOM 195 O ARG Q 21 -21.940 14.831 74.817 1.00118.41 ATOM 196 CB ARG Q 21 -25.242 14.419 74.872 1.00119.10 ATOM 197 CG ARG Q 21 -25.499 15.775 74.205 1.00119.15 ATOM 198 CD ARG Q 21 -26.827 16.353 74.651 1.00119.80 ATOM 199 NE ARG Q 21 -26.824 17.809 74.635 1.00120.14 ATOM 200 CZ ARG Q 21 -27.690 18.560 75.307 1.00120.85 ATOM 201 NH1 ARG Q 21 -27.610 19.880 75.236 1.00121.14 ATOM 202 NH2 ARG Q 21 -28.631 17.993 76.053 1.00121.30 ATOM 203 N ALA Q 22 -22.672 13.405 76.408 1.00119.15 ATOM 204 CA ALA Q 22 -21.662 13.785 77.394 1.00119.46 ATOM 205 C ALA Q 22 -20.240 13.591 76.881 1.00118.88 ATOM 206 O ALA Q 22 -19.301 14.124 77.483 1.00119.07 ATOM 207 CB ALA Q 22 -21.874 13.002 78.695 1.00120.01 ATOM 208 N ARG Q 23 -20.063 12.828 75.796 1.00114.32 ATOM 209 CA ARG Q 23 -18.838 12.912 75.004 1.00113.73 ATOM 210 C ARG Q 23 -18.550 14.349 74.585 1.00113.74 ATOM 211 O ARG Q 23 -17.397 14.794 74.588 1.00113.60 ATOM 212 CB ARG Q 23 -18.962 12.032 73.756 1.00113.04 ATOM 213 CG ARG Q 23 -18.752 10.544 73.976 1.00112.85 ATOM 214 CD ARG Q 23 -18.862 9.792 72.659 1.00112.18 ATOM 215 NE ARG Q 23 -17.728 8.908 72.417 1.00111.73 ATOM 216 CZ ARG Q 23 -16.696 9.229 71.648 1.00111.27 ATOM 217 NH1 ARG Q 23 -15.700 8.381 71.466 1.00110.90 ATOM 218 NH2 ARG Q 23 -16.663 10.404 71.061 1.00111.19 ATOM 219 N SER Q 24 -19.590 15.092 74.228 1.00119.59 ATOM 220 CA SER Q 24 -19.412 16.410 73.644 1.00119.56 ATOM 221 C SER Q 24 -19.169 17.506 74.678 1.00120.21 ATOM 222 O SER Q 24 -18.974 18.658 74.279 1.00120.24 ATOM 223 CB SER Q 24 -20.638 16.763 72.792 1.00119.53 ATOM 224 OG SER Q 24 -20.319 17.658 71.742 1.00119.22 ATOM 225 N LYS Q 25 -19.174 17.199 75.976 1.00122.75 ATOM 226 CA LYS Q 25 -19.043 18.228 77.014 1.00123.43 ATOM 227 C LYS Q 25 -17.798 19.093 76.846 1.00123.28 ATOM 228 O LYS Q 25 -16.758 18.629 76.374 1.00122.73 ATOM 229 CB LYS Q 25 -19.030 17.588 78.405 1.00123.96 ATOM 230 CG LYS Q 25 -20.393 17.107 78.906 1.00124.40 ATOM 231 CD LYS Q 25 -20.502 17.064 80.462 1.00125.20 ATOM 232 CE LYS Q 25 -19.838 15.821 81.067 1.00125.11 ATOM 233 NZ LYS Q 25 -20.521 15.380 82.319 1.00125.83 TER