HEADER RIBOSOME 31-DEC-69 5NDV TITLE Crystal structure of Paromomycin bound to the yeast 80S ribosome COMPND MOL_ID: 8; COMPND 2 MOLECULE: 60S ribosomal protein L6-A; COMPND 3 CHAIN: L6, l6; COMPND 4 MOL_ID: 17; COMPND 5 60S ribosomal protein L16-A; COMPND 6 CHAIN: M6, m6; COMPND 7 MOL_ID: 27; COMPND 8 60S ribosomal protein L26-A; COMPND 9 CHAIN: N6, n6; COMPND 10 MOL_ID: 37; COMPND 11 60S ribosomal protein L36-A; COMPND 12 CHAIN: O6, o6; COMPND 13 MOL_ID: 45; COMPND 14 18S ribosomal RNA; COMPND 15 CHAIN: 2, 6; COMPND 16 MOL_ID: 52; COMPND 17 40S ribosomal protein S6-A; COMPND 18 CHAIN: S6; COMPND 19 MOL_ID: 62; COMPND 20 40S ribosomal protein S16-A; COMPND 21 CHAIN: C6, c6; COMPND 22 MOL_ID: 72; COMPND 23 40S ribosomal protein S26-B; COMPND 24 CHAIN: D6, d6; COMPND 25 MOL_ID: 79; COMPND 26 40S ribosomal protein S6-A; COMPND 27 CHAIN: s6; COMPND 28 MOL_ID: 42; COMPND 29 60S ribosomal protein L41-B; COMPND 30 CHAIN: Q1, q1; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.30 ANGSTORMS DBREF 5NDV 6 1 1800 GB 87434670 CP011558.1 4576 45581 DBREF 5NDV q 1 25 UNP P0CX87 RL41B_YEAST 1 25 SEQRES 1 q1 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 q1 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET q 1 236.500 0.444 231.992 1.00 79.22 ATOM 2 CA MET q 1 236.009 -0.120 230.744 1.00 79.22 ATOM 3 C MET q 1 236.758 0.462 229.565 1.00 79.45 ATOM 4 O MET q 1 237.328 1.550 229.662 1.00 79.48 ATOM 5 CB MET q 1 234.508 0.130 230.583 1.00 78.77 ATOM 6 CG MET q 1 234.123 1.583 230.286 1.00 78.50 ATOM 7 SD MET q 1 232.347 1.840 230.016 1.00 77.98 ATOM 8 CE MET q 1 232.043 0.857 228.553 1.00 78.13 ATOM 9 N ARG q 2 236.711 -0.263 228.447 1.00 67.81 ATOM 10 CA ARG q 2 237.487 0.099 227.271 1.00 68.09 ATOM 11 C ARG q 2 237.275 1.563 226.923 1.00 67.89 ATOM 12 O ARG q 2 236.159 2.080 226.997 1.00 67.49 ATOM 13 CB ARG q 2 237.089 -0.783 226.088 1.00 68.21 ATOM 14 CG ARG q 2 237.451 -0.208 224.731 1.00 68.39 ATOM 15 CD ARG q 2 238.586 -0.971 224.063 1.00 68.91 ATOM 16 NE ARG q 2 238.139 -2.200 223.397 1.00 69.03 ATOM 17 CZ ARG q 2 238.064 -2.371 222.074 1.00 69.20 ATOM 18 NH1 ARG q 2 238.408 -1.396 221.239 1.00 69.27 ATOM 19 NH2 ARG q 2 237.646 -3.530 221.582 1.00 69.33 ATOM 20 N ALA q 3 238.374 2.238 226.587 1.00 70.33 ATOM 21 CA ALA q 3 238.311 3.618 226.120 1.00 70.20 ATOM 22 C ALA q 3 237.229 3.785 225.056 1.00 69.96 ATOM 23 O ALA q 3 236.284 4.563 225.221 1.00 69.58 ATOM 24 CB ALA q 3 239.683 4.034 225.587 1.00 70.63 ATOM 25 N LYS q 4 237.372 3.050 223.950 1.00 74.72 ATOM 26 CA LYS q 4 236.409 3.075 222.852 1.00 74.55 ATOM 27 C LYS q 4 234.967 2.942 223.335 1.00 74.09 ATOM 28 O LYS q 4 234.083 3.672 222.873 1.00 73.80 ATOM 29 CB LYS q 4 236.743 1.943 221.880 1.00 74.90 ATOM 30 CG LYS q 4 236.326 2.148 220.437 1.00 74.94 ATOM 31 CD LYS q 4 236.519 0.849 219.669 1.00 75.27 ATOM 32 CE LYS q 4 236.809 1.088 218.211 1.00 75.54 ATOM 33 NZ LYS q 4 237.138 -0.196 217.540 1.00 75.93 ATOM 34 N TRP q 5 234.700 2.011 224.254 1.00 73.29 ATOM 35 CA TRP q 5 233.317 1.780 224.659 1.00 72.88 ATOM 36 C TRP q 5 232.793 2.820 225.641 1.00 72.51 ATOM 37 O TRP q 5 231.576 3.013 225.716 1.00 72.14 ATOM 38 CB TRP q 5 233.147 0.382 225.254 1.00 72.94 ATOM 39 CG TRP q 5 233.500 -0.776 224.352 1.00 73.30 ATOM 40 CD1 TRP q 5 233.871 -2.024 224.760 1.00 73.54 ATOM 41 CD2 TRP q 5 233.515 -0.808 222.912 1.00 73.48 ATOM 42 NE1 TRP q 5 234.119 -2.825 223.677 1.00 73.87 ATOM 43 CE2 TRP q 5 233.908 -2.105 222.531 1.00 73.84 ATOM 44 CE3 TRP q 5 233.234 0.128 221.910 1.00 73.39 ATOM 45 CZ2 TRP q 5 234.027 -2.488 221.196 1.00 74.10 ATOM 46 CZ3 TRP q 5 233.354 -0.255 220.590 1.00 73.66 ATOM 47 CH2 TRP q 5 233.746 -1.550 220.245 1.00 74.01 ATOM 48 N ARG q 6 233.662 3.488 226.400 1.00 82.47 ATOM 49 CA ARG q 6 233.214 4.673 227.123 1.00 82.15 ATOM 50 C ARG q 6 232.753 5.750 226.150 1.00 82.01 ATOM 51 O ARG q 6 231.805 6.492 226.432 1.00 81.65 ATOM 52 CB ARG q 6 234.334 5.203 228.015 1.00 82.35 ATOM 53 CG ARG q 6 233.961 5.321 229.477 1.00 82.12 ATOM 54 CD ARG q 6 233.377 6.681 229.823 1.00 81.81 ATOM 55 NE ARG q 6 234.396 7.601 230.333 1.00 82.01 ATOM 56 CZ ARG q 6 234.138 8.741 230.984 1.00 81.81 ATOM 57 NH1 ARG q 6 232.884 9.115 231.221 1.00 81.42 ATOM 58 NH2 ARG q 6 235.137 9.514 231.407 1.00 82.04 ATOM 59 N LYS q 7 233.419 5.848 224.996 1.00 78.20 ATOM 60 CA LYS q 7 233.042 6.815 223.968 1.00 78.11 ATOM 61 C LYS q 7 231.641 6.526 223.442 1.00 77.79 ATOM 62 O LYS q 7 230.750 7.383 223.501 1.00 77.46 ATOM 63 CB LYS q 7 234.071 6.775 222.833 1.00 78.53 ATOM 64 CG LYS q 7 234.166 8.008 221.960 1.00 78.57 ATOM 65 CD LYS q 7 235.251 7.786 220.922 1.00 79.03 ATOM 66 CE LYS q 7 235.542 9.037 220.119 1.00 79.13 ATOM 67 NZ LYS q 7 236.548 8.790 219.041 1.00 79.60 ATOM 68 N LYS q 8 231.430 5.305 222.934 1.00 70.68 ATOM 69 CA LYS q 8 230.101 4.881 222.508 1.00 70.40 ATOM 70 C LYS q 8 229.077 5.058 223.619 1.00 69.98 ATOM 71 O LYS q 8 227.919 5.391 223.354 1.00 69.67 ATOM 72 CB LYS q 8 230.145 3.420 222.046 1.00 70.63 ATOM 73 CG LYS q 8 228.854 2.931 221.399 1.00 70.42 ATOM 74 CD LYS q 8 228.940 1.492 220.885 1.00 70.69 ATOM 75 CE LYS q 8 229.810 1.371 219.642 1.00 71.11 ATOM 76 NZ LYS q 8 229.308 2.137 218.466 1.00 71.05 ATOM 77 N ARG q 9 229.487 4.876 224.870 1.00 69.52 ATOM 78 CA ARG q 9 228.530 4.981 225.962 1.00 69.14 ATOM 79 C ARG q 9 228.037 6.407 226.147 1.00 68.86 ATOM 80 O ARG q 9 226.836 6.628 226.334 1.00 68.51 ATOM 81 CB ARG q 9 229.149 4.454 227.248 1.00 69.25 ATOM 82 CG ARG q 9 228.586 3.126 227.673 1.00 69.20 ATOM 83 CD ARG q 9 227.592 3.328 228.780 1.00 68.83 ATOM 84 NE ARG q 9 228.235 3.842 229.983 1.00 68.85 ATOM 85 CZ ARG q 9 228.835 3.077 230.887 1.00 69.04 ATOM 86 NH1 ARG q 9 228.879 1.760 230.720 1.00 69.21 ATOM 87 NH2 ARG q 9 229.391 3.629 231.957 1.00 69.07 ATOM 88 N THR q 10 228.932 7.391 226.120 1.00 84.82 ATOM 89 CA THR q 10 228.443 8.755 226.250 1.00 84.58 ATOM 90 C THR q 10 227.851 9.272 224.947 1.00 84.51 ATOM 91 O THR q 10 226.993 10.160 224.985 1.00 84.22 ATOM 92 CB THR q 10 229.537 9.718 226.744 1.00 84.77 ATOM 93 OG1 THR q 10 230.438 10.035 225.679 1.00 85.09 ATOM 94 CG2 THR q 10 230.314 9.121 227.913 1.00 84.93 ATOM 95 N ARG q 11 228.262 8.728 223.799 1.00 88.07 ATOM 96 CA ARG q 11 227.616 9.115 222.547 1.00 88.01 ATOM 97 C ARG q 11 226.141 8.736 222.545 1.00 87.65 ATOM 98 O ARG q 11 225.330 9.385 221.875 1.00 87.46 ATOM 99 CB ARG q 11 228.333 8.473 221.364 1.00 88.39 ATOM 100 CG ARG q 11 229.737 8.994 221.142 1.00 88.75 ATOM 101 CD ARG q 11 229.760 10.197 220.215 1.00 88.79 ATOM 102 NE ARG q 11 231.120 10.494 219.765 1.00 89.21 ATOM 103 CZ ARG q 11 231.767 9.804 218.827 1.00 89.57 ATOM 104 NH1 ARG q 11 231.184 8.769 218.234 1.00 89.56 ATOM 105 NH2 ARG q 11 233.001 10.144 218.484 1.00 89.94 ATOM 106 N ARG q 12 225.782 7.686 223.283 1.00 86.29 ATOM 107 CA ARG q 12 224.379 7.383 223.533 1.00 85.94 ATOM 108 C ARG q 12 223.773 8.333 224.554 1.00 85.60 ATOM 109 O ARG q 12 222.596 8.689 224.441 1.00 85.30 ATOM 110 CB ARG q 12 224.237 5.941 224.016 1.00 85.98 ATOM 111 CG ARG q 12 224.786 4.948 223.029 1.00 86.33 ATOM 112 CD ARG q 12 224.875 3.559 223.611 1.00 86.43 ATOM 113 NE ARG q 12 225.304 2.602 222.597 1.00 86.77 ATOM 114 CZ ARG q 12 225.622 1.340 222.856 1.00 86.98 ATOM 115 NH1 ARG q 12 225.557 0.887 224.103 1.00 86.89 ATOM 116 NH2 ARG q 12 226.005 0.532 221.871 1.00 87.31 ATOM 117 N LEU q 13 224.553 8.735 225.557 1.00 61.62 ATOM 118 CA LEU q 13 224.054 9.661 226.565 1.00 61.34 ATOM 119 C LEU q 13 223.720 11.015 225.956 1.00 61.23 ATOM 120 O LEU q 13 222.715 11.636 226.317 1.00 60.91 ATOM 121 CB LEU q 13 225.089 9.820 227.673 1.00 61.51 ATOM 122 CG LEU q 13 224.626 9.981 229.120 1.00 61.28 ATOM 123 CD1 LEU q 13 225.840 10.146 230.008 1.00 61.53 ATOM 124 CD2 LEU q 13 223.669 11.143 229.311 1.00 60.96 ATOM 125 N LYS q 14 224.554 11.497 225.037 1.00 71.48 ATOM 126 CA LYS q 14 224.295 12.806 224.447 1.00 71.40 ATOM 127 C LYS q 14 223.085 12.772 223.521 1.00 71.19 ATOM 128 O LYS q 14 222.397 13.788 223.366 1.00 70.99 ATOM 129 CB LYS q 14 225.541 13.309 223.714 1.00 71.77 ATOM 130 CG LYS q 14 226.434 14.164 224.596 1.00 71.89 ATOM 131 CD LYS q 14 227.859 14.171 224.113 1.00 72.31 ATOM 132 CE LYS q 14 227.960 14.683 222.694 1.00 72.47 ATOM 133 NZ LYS q 14 229.381 14.748 222.236 1.00 72.90 ATOM 134 N ARG q 15 222.794 11.618 222.917 1.00 90.21 ATOM 135 CA ARG q 15 221.592 11.506 222.102 1.00 90.01 ATOM 136 C ARG q 15 220.345 11.576 222.967 1.00 89.61 ATOM 137 O ARG q 15 219.436 12.369 222.702 1.00 89.38 ATOM 138 CB ARG q 15 221.620 10.212 221.296 1.00 90.19 ATOM 139 CG ARG q 15 222.618 10.234 220.154 1.00 90.57 ATOM 140 CD ARG q 15 222.109 9.441 218.942 1.00 90.66 ATOM 141 NE ARG q 15 221.406 8.219 219.336 1.00 90.54 ATOM 142 CZ ARG q 15 222.005 7.113 219.778 1.00 90.73 ATOM 143 NH1 ARG q 15 223.328 7.073 219.883 1.00 91.04 ATOM 144 NH2 ARG q 15 221.284 6.047 220.123 1.00 90.62 ATOM 145 N LYS q 16 220.287 10.760 224.016 1.00 88.70 ATOM 146 CA LYS q 16 219.141 10.810 224.915 1.00 88.35 ATOM 147 C LYS q 16 219.001 12.184 225.572 1.00 88.17 ATOM 148 O LYS q 16 217.877 12.643 225.805 1.00 87.88 ATOM 149 CB LYS q 16 219.262 9.709 225.975 1.00 88.35 ATOM 150 CG LYS q 16 217.927 9.188 226.539 1.00 88.04 ATOM 151 CD LYS q 16 218.146 8.270 227.761 1.00 88.06 ATOM 152 CE LYS q 16 218.790 9.034 228.942 1.00 88.07 ATOM 153 NZ LYS q 16 219.395 8.167 230.014 1.00 88.20 ATOM 154 N ARG q 17 220.120 12.855 225.873 1.00 73.43 ATOM 155 CA ARG q 17 220.054 14.166 226.523 1.00 73.31 ATOM 156 C ARG q 17 219.563 15.242 225.563 1.00 73.23 ATOM 157 O ARG q 17 218.854 16.172 225.969 1.00 73.02 ATOM 158 CB ARG q 17 221.418 14.547 227.099 1.00 73.58 ATOM 159 CG ARG q 17 221.648 14.046 228.513 1.00 73.55 ATOM 160 CD ARG q 17 222.477 15.032 229.325 1.00 73.68 ATOM 161 NE ARG q 17 223.881 14.640 229.420 1.00 74.03 ATOM 162 CZ ARG q 17 224.471 14.194 230.529 1.00 74.13 ATOM 163 NH1 ARG q 17 223.785 14.078 231.666 1.00 73.91 ATOM 164 NH2 ARG q 17 225.761 13.864 230.501 1.00 74.47 ATOM 165 N ARG q 18 219.938 15.142 224.287 1.00 91.87 ATOM 166 CA ARG q 18 219.348 16.017 223.279 1.00 91.81 ATOM 167 C ARG q 18 217.847 15.781 223.166 1.00 91.47 ATOM 168 O ARG q 18 217.064 16.735 223.079 1.00 91.28 ATOM 169 CB ARG q 18 220.024 15.793 221.923 1.00 92.11 ATOM 170 CG ARG q 18 221.474 16.263 221.840 1.00 92.46 ATOM 171 CD ARG q 18 222.011 16.288 220.391 1.00 92.76 ATOM 172 NE ARG q 18 222.483 14.985 219.902 1.00 92.98 ATOM 173 CZ ARG q 18 222.082 14.400 218.769 1.00 93.04 ATOM 174 NH1 ARG q 18 222.579 13.212 218.422 1.00 93.26 ATOM 175 NH2 ARG q 18 221.189 14.999 217.978 1.00 92.91 ATOM 176 N LYS q 19 217.430 14.511 223.176 1.00 73.84 ATOM 177 CA LYS q 19 216.025 14.166 222.987 1.00 73.57 ATOM 178 C LYS q 19 215.158 14.676 224.134 1.00 73.24 ATOM 179 O LYS q 19 214.074 15.226 223.901 1.00 73.01 ATOM 180 CB LYS q 19 215.882 12.652 222.837 1.00 73.63 ATOM 181 CG LYS q 19 215.487 12.204 221.436 1.00 73.72 ATOM 182 CD LYS q 19 216.400 12.786 220.353 1.00 74.01 ATOM 183 CE LYS q 19 217.636 11.931 220.103 1.00 74.37 ATOM 184 NZ LYS q 19 218.456 12.475 218.984 1.00 74.66 ATOM 185 N VAL q 20 215.607 14.499 225.378 1.00 80.32 ATOM 186 CA VAL q 20 214.831 14.995 226.511 1.00 80.05 ATOM 187 C VAL q 20 214.751 16.514 226.477 1.00 79.99 ATOM 188 O VAL q 20 213.709 17.102 226.782 1.00 79.73 ATOM 189 CB VAL q 20 215.432 14.501 227.839 1.00 80.09 ATOM 190 CG1 VAL q 20 214.598 15.015 229.017 1.00 79.83 ATOM 191 CG2 VAL q 20 215.547 12.972 227.850 1.00 80.18 ATOM 192 N ARG q 21 215.850 17.175 226.119 1.00 61.21 ATOM 193 CA ARG q 21 215.822 18.628 226.041 1.00 61.19 ATOM 194 C ARG q 21 214.913 19.099 224.917 1.00 61.08 ATOM 195 O ARG q 21 214.324 20.183 225.004 1.00 60.94 ATOM 196 CB ARG q 21 217.238 19.159 225.851 1.00 61.52 ATOM 197 CG ARG q 21 217.387 20.623 226.185 1.00 61.54 ATOM 198 CD ARG q 21 218.778 20.898 226.702 1.00 61.83 ATOM 199 NE ARG q 21 219.542 21.829 225.878 1.00 62.09 ATOM 200 CZ ARG q 21 219.410 23.149 225.928 1.00 62.09 ATOM 201 NH1 ARG q 21 218.525 23.702 226.740 1.00 61.84 ATOM 202 NH2 ARG q 21 220.159 23.917 225.159 1.00 62.36 ATOM 203 N ALA q 22 214.779 18.290 223.863 1.00 70.64 ATOM 204 CA ALA q 22 213.920 18.652 222.744 1.00 70.56 ATOM 205 C ALA q 22 212.479 18.859 223.186 1.00 70.21 ATOM 206 O ALA q 22 211.786 19.734 222.657 1.00 70.12 ATOM 207 CB ALA q 22 213.996 17.576 221.663 1.00 70.70 ATOM 208 N ARG q 23 212.013 18.082 224.162 1.00 61.46 ATOM 209 CA ARG q 23 210.642 18.232 224.636 1.00 61.15 ATOM 210 C ARG q 23 210.358 19.623 225.184 1.00 61.04 ATOM 211 O ARG q 23 209.188 19.960 225.391 1.00 60.79 ATOM 212 CB ARG q 23 210.339 17.171 225.694 1.00 61.02 ATOM 213 CG ARG q 23 210.393 15.757 225.136 1.00 61.11 ATOM 214 CD ARG q 23 210.273 14.714 226.223 1.00 61.03 ATOM 215 NE ARG q 23 209.132 14.986 227.089 1.00 60.74 ATOM 216 CZ ARG q 23 207.935 14.433 226.940 1.00 60.54 ATOM 217 NH1 ARG q 23 207.716 13.571 225.958 1.00 60.62 ATOM 218 NH2 ARG q 23 206.958 14.743 227.774 1.00 60.29 ATOM 219 N SER q 24 211.383 20.441 225.406 1.00 83.55 ATOM 220 CA SER q 24 211.188 21.838 225.772 1.00 83.49 ATOM 221 C SER q 24 210.951 22.718 224.558 1.00 83.55 ATOM 222 O SER q 24 210.849 23.942 224.707 1.00 83.56 ATOM 223 CB SER q 24 212.395 22.349 226.550 1.00 83.70 ATOM 224 OG SER q 24 212.945 21.281 227.296 1.00 83.75 ATOM 225 N LYS q 25 210.900 22.116 223.371 1.00 91.25 ATOM 226 CA LYS q 25 210.475 22.766 222.133 1.00 91.29 ATOM 227 C LYS q 25 211.499 23.802 221.675 1.00 91.57 ATOM 228 O LYS q 25 212.452 23.462 220.969 1.00 91.83 ATOM 229 CB LYS q 25 209.079 23.397 222.305 1.00 91.01 ATOM 230 CG LYS q 25 208.032 22.475 222.986 1.00 90.72 ATOM 231 CD LYS q 25 207.945 21.091 222.328 1.00 90.75 ATOM 232 CE LYS q 25 207.364 21.183 220.914 1.00 90.78 ATOM 233 NZ LYS q 25 208.106 20.355 219.912 1.00 91.03 ATOM 234 MG MG q1987 232.139 16.219 220.450 1.00 68.23 TER