HEADER RIBOSOME 31-DEC-69 5NDW TITLE Crystal structure of aminoglycoside TC007 bound to the yeast 80S TITLE 2 ribosome COMPND MOL_ID: 65; COMPND 2 MOLECULE: 60S ribosomal protein L41-A; COMPND 3 CHAIN: q1, Q1; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.70 ANGSTORMS DBREF 5NDW q 1 25 UNP P0CX86 RL41A_YEAST 1 25 SEQRES 1 q1 25 MET ARG ALA LYS TRP ARG LYS LYS ARG THR ARG ARG LEU SEQRES 2 q1 25 LYS ARG LYS ARG ARG LYS VAL ARG ALA ARG SER LYS ATOM 1 N MET q 1 228.163 0.989 231.663 1.00128.79 ATOM 2 CA MET q 1 227.750 0.221 230.490 1.00128.87 ATOM 3 C MET q 1 228.499 0.667 229.239 1.00129.12 ATOM 4 O MET q 1 229.025 1.775 229.229 1.00129.14 ATOM 5 CB MET q 1 226.269 0.392 230.286 1.00128.58 ATOM 6 CG MET q 1 225.915 1.847 230.134 1.00128.40 ATOM 7 SD MET q 1 224.159 2.097 229.828 1.00128.07 ATOM 8 CE MET q 1 223.924 1.040 228.395 1.00128.25 ATOM 9 N ARG q 2 228.519 -0.175 228.192 1.00117.83 ATOM 10 CA ARG q 2 229.281 0.116 226.972 1.00118.10 ATOM 11 C ARG q 2 228.943 1.507 226.452 1.00117.97 ATOM 12 O ARG q 2 227.783 1.914 226.444 1.00117.70 ATOM 13 CB ARG q 2 228.999 -0.948 225.893 1.00118.27 ATOM 14 CG ARG q 2 229.004 -0.455 224.414 1.00118.40 ATOM 15 CD ARG q 2 230.099 -1.099 223.500 1.00118.81 ATOM 16 NE ARG q 2 229.644 -2.189 222.610 1.00118.94 ATOM 17 CZ ARG q 2 229.678 -2.162 221.272 1.00119.14 ATOM 18 NH1 ARG q 2 230.134 -1.098 220.626 1.00119.23 ATOM 19 NH2 ARG q 2 229.257 -3.212 220.575 1.00119.27 ATOM 20 N ALA q 3 229.968 2.251 226.030 1.00121.43 ATOM 21 CA ALA q 3 229.780 3.684 225.815 1.00121.32 ATOM 22 C ALA q 3 228.858 3.982 224.640 1.00121.25 ATOM 23 O ALA q 3 228.222 5.035 224.620 1.00121.05 ATOM 24 CB ALA q 3 231.127 4.373 225.619 1.00121.58 ATOM 25 N LYS q 4 228.765 3.085 223.657 1.00109.52 ATOM 26 CA LYS q 4 227.821 3.304 222.564 1.00109.47 ATOM 27 C LYS q 4 226.380 3.224 223.053 1.00109.11 ATOM 28 O LYS q 4 225.546 4.043 222.668 1.00108.94 ATOM 29 CB LYS q 4 228.052 2.291 221.442 1.00109.75 ATOM 30 CG LYS q 4 226.987 2.326 220.355 1.00109.69 ATOM 31 CD LYS q 4 227.176 1.209 219.333 1.00109.98 ATOM 32 CE LYS q 4 228.532 1.239 218.657 1.00110.36 ATOM 33 NZ LYS q 4 228.583 0.297 217.505 1.00110.64 ATOM 34 N TRP q 5 226.066 2.251 223.907 1.00122.16 ATOM 35 CA TRP q 5 224.689 2.088 224.363 1.00121.84 ATOM 36 C TRP q 5 224.299 3.148 225.385 1.00121.55 ATOM 37 O TRP q 5 223.125 3.520 225.461 1.00121.30 ATOM 38 CB TRP q 5 224.468 0.692 224.949 1.00121.84 ATOM 39 CG TRP q 5 224.977 -0.460 224.105 1.00122.16 ATOM 40 CD1 TRP q 5 225.615 -1.585 224.559 1.00122.32 ATOM 41 CD2 TRP q 5 224.890 -0.605 222.673 1.00122.35 ATOM 42 NE1 TRP q 5 225.930 -2.413 223.505 1.00122.61 ATOM 43 CE2 TRP q 5 225.490 -1.836 222.341 1.00122.63 ATOM 44 CE3 TRP q 5 224.368 0.184 221.644 1.00122.33 ATOM 45 CZ2 TRP q 5 225.573 -2.292 221.027 1.00122.88 ATOM 46 CZ3 TRP q 5 224.445 -0.278 220.351 1.00122.58 ATOM 47 CH2 TRP q 5 225.046 -1.496 220.050 1.00122.86 ATOM 48 N ARG q 6 225.248 3.644 226.180 1.00126.47 ATOM 49 CA ARG q 6 224.943 4.799 227.010 1.00126.23 ATOM 50 C ARG q 6 224.732 6.042 226.166 1.00126.22 ATOM 51 O ARG q 6 224.043 6.966 226.608 1.00125.98 ATOM 52 CB ARG q 6 226.052 5.053 228.032 1.00126.32 ATOM 53 CG ARG q 6 225.545 5.362 229.440 1.00126.05 ATOM 54 CD ARG q 6 225.217 6.841 229.658 1.00125.88 ATOM 55 NE ARG q 6 226.328 7.558 230.293 1.00126.01 ATOM 56 CZ ARG q 6 226.225 8.747 230.894 1.00125.87 ATOM 57 NH1 ARG q 6 225.044 9.381 230.963 1.00125.60 ATOM 58 NH2 ARG q 6 227.311 9.299 231.437 1.00126.03 ATOM 59 N LYS q 7 225.315 6.085 224.966 1.00108.19 ATOM 60 CA LYS q 7 225.017 7.161 224.028 1.00108.20 ATOM 61 C LYS q 7 223.645 6.967 223.402 1.00108.03 ATOM 62 O LYS q 7 222.938 7.941 223.127 1.00107.88 ATOM 63 CB LYS q 7 226.100 7.229 222.952 1.00108.55 ATOM 64 CG LYS q 7 225.856 8.261 221.852 1.00108.61 ATOM 65 CD LYS q 7 226.994 8.312 220.798 1.00108.98 ATOM 66 CE LYS q 7 226.727 9.406 219.757 1.00109.04 ATOM 67 NZ LYS q 7 227.874 9.708 218.868 1.00109.40 ATOM 68 N LYS q 8 223.254 5.712 223.176 1.00116.69 ATOM 69 CA LYS q 8 221.888 5.403 222.760 1.00116.52 ATOM 70 C LYS q 8 220.899 5.655 223.892 1.00116.15 ATOM 71 O LYS q 8 219.803 6.170 223.657 1.00115.96 ATOM 72 CB LYS q 8 221.799 3.948 222.278 1.00116.67 ATOM 73 CG LYS q 8 220.418 3.487 221.782 1.00116.52 ATOM 74 CD LYS q 8 220.376 1.986 221.408 1.00116.68 ATOM 75 CE LYS q 8 220.984 1.699 220.026 1.00117.03 ATOM 76 NZ LYS q 8 219.995 1.673 218.913 1.00117.04 ATOM 77 N ARG q 9 221.269 5.297 225.125 1.00115.52 ATOM 78 CA ARG q 9 220.385 5.532 226.262 1.00115.19 ATOM 79 C ARG q 9 220.025 7.006 226.367 1.00115.03 ATOM 80 O ARG q 9 218.849 7.357 226.497 1.00114.78 ATOM 81 CB ARG q 9 221.026 5.038 227.564 1.00115.18 ATOM 82 CG ARG q 9 220.157 5.139 228.856 1.00114.87 ATOM 83 CD ARG q 9 221.068 5.292 230.103 1.00114.90 ATOM 84 NE ARG q 9 220.900 4.329 231.202 1.00114.81 ATOM 85 CZ ARG q 9 220.934 2.998 231.090 1.00114.93 ATOM 86 NH1 ARG q 9 221.076 2.405 229.910 1.00115.12 ATOM 87 NH2 ARG q 9 220.796 2.243 232.172 1.00114.86 ATOM 88 N THR q 10 221.016 7.890 226.285 1.00106.89 ATOM 89 CA THR q 10 220.696 9.300 226.428 1.00106.75 ATOM 90 C THR q 10 220.060 9.897 225.181 1.00106.76 ATOM 91 O THR q 10 219.438 10.963 225.268 1.00106.59 ATOM 92 CB THR q 10 221.942 10.074 226.786 1.00106.91 ATOM 93 OG1 THR q 10 222.843 9.996 225.684 1.00107.21 ATOM 94 CG2 THR q 10 222.572 9.458 228.023 1.00106.90 ATOM 95 N ARG q 11 220.193 9.242 224.028 1.00129.75 ATOM 96 CA ARG q 11 219.480 9.703 222.840 1.00129.77 ATOM 97 C ARG q 11 217.981 9.492 222.992 1.00129.49 ATOM 98 O ARG q 11 217.188 10.364 222.627 1.00129.37 ATOM 99 CB ARG q 11 220.011 8.991 221.591 1.00130.08 ATOM 100 CG ARG q 11 221.343 9.550 221.065 1.00130.38 ATOM 101 CD ARG q 11 221.146 10.249 219.728 1.00130.52 ATOM 102 NE ARG q 11 222.334 10.942 219.236 1.00130.79 ATOM 103 CZ ARG q 11 223.374 10.333 218.674 1.00131.10 ATOM 104 NH1 ARG q 11 223.383 9.008 218.562 1.00131.17 ATOM 105 NH2 ARG q 11 224.409 11.044 218.227 1.00131.35 ATOM 106 N ARG q 12 217.583 8.347 223.550 1.00111.55 ATOM 107 CA ARG q 12 216.174 8.089 223.833 1.00111.28 ATOM 108 C ARG q 12 215.617 9.076 224.851 1.00111.01 ATOM 109 O ARG q 12 214.503 9.577 224.690 1.00110.81 ATOM 110 CB ARG q 12 216.001 6.660 224.348 1.00111.26 ATOM 111 CG ARG q 12 216.497 5.568 223.427 1.00111.54 ATOM 112 CD ARG q 12 216.389 4.228 224.111 1.00111.51 ATOM 113 NE ARG q 12 216.551 3.139 223.167 1.00111.76 ATOM 114 CZ ARG q 12 216.946 1.917 223.503 1.00111.87 ATOM 115 NH1 ARG q 12 217.228 1.635 224.768 1.00111.76 ATOM 116 NH2 ARG q 12 217.071 0.976 222.570 1.00112.11 ATOM 117 N LEU q 13 216.361 9.334 225.925 1.00108.22 ATOM 118 CA LEU q 13 215.920 10.304 226.916 1.00107.98 ATOM 119 C LEU q 13 215.619 11.637 226.267 1.00107.96 ATOM 120 O LEU q 13 214.558 12.222 226.498 1.00107.73 ATOM 121 CB LEU q 13 216.988 10.486 227.986 1.00108.03 ATOM 122 CG LEU q 13 216.504 10.624 229.441 1.00107.78 ATOM 123 CD1 LEU q 13 217.626 11.116 230.358 1.00107.86 ATOM 124 CD2 LEU q 13 215.246 11.487 229.577 1.00107.51 ATOM 125 N LYS q 14 216.549 12.133 225.454 1.00131.89 ATOM 126 CA LYS q 14 216.377 13.439 224.829 1.00131.91 ATOM 127 C LYS q 14 215.129 13.480 223.954 1.00131.81 ATOM 128 O LYS q 14 214.436 14.501 223.911 1.00131.68 ATOM 129 CB LYS q 14 217.614 13.801 224.009 1.00132.22 ATOM 130 CG LYS q 14 218.780 14.357 224.813 1.00132.32 ATOM 131 CD LYS q 14 219.952 14.731 223.885 1.00132.64 ATOM 132 CE LYS q 14 219.584 15.872 222.917 1.00132.70 ATOM 133 NZ LYS q 14 220.625 16.153 221.878 1.00133.04 ATOM 134 N ARG q 15 214.827 12.388 223.241 1.00155.50 ATOM 135 CA ARG q 15 213.594 12.352 222.456 1.00155.42 ATOM 136 C ARG q 15 212.382 12.469 223.353 1.00155.09 ATOM 137 O ARG q 15 211.426 13.182 223.030 1.00154.96 ATOM 138 CB ARG q 15 213.492 11.062 221.651 1.00155.56 ATOM 139 CG ARG q 15 214.624 10.830 220.695 1.00155.91 ATOM 140 CD ARG q 15 214.254 9.711 219.743 1.00156.05 ATOM 141 NE ARG q 15 213.151 10.113 218.869 1.00156.00 ATOM 142 CZ ARG q 15 212.836 9.494 217.732 1.00156.18 ATOM 143 NH1 ARG q 15 213.551 8.428 217.331 1.00156.41 ATOM 144 NH2 ARG q 15 211.810 9.944 216.997 1.00156.14 ATOM 145 N LYS q 16 212.407 11.764 224.485 1.00127.64 ATOM 146 CA LYS q 16 211.250 11.745 225.367 1.00127.33 ATOM 147 C LYS q 16 211.070 13.079 226.068 1.00127.17 ATOM 148 O LYS q 16 209.935 13.480 226.344 1.00126.94 ATOM 149 CB LYS q 16 211.381 10.616 226.379 1.00127.26 ATOM 150 CG LYS q 16 210.136 9.767 226.473 1.00127.07 ATOM 151 CD LYS q 16 210.292 8.744 227.573 1.00127.01 ATOM 152 CE LYS q 16 210.694 9.434 228.872 1.00126.88 ATOM 153 NZ LYS q 16 211.126 8.472 229.924 1.00126.88 ATOM 154 N ARG q 17 212.164 13.785 226.361 1.00121.98 ATOM 155 CA ARG q 17 212.000 15.111 226.935 1.00121.85 ATOM 156 C ARG q 17 211.586 16.134 225.889 1.00121.91 ATOM 157 O ARG q 17 210.963 17.141 226.233 1.00121.75 ATOM 158 CB ARG q 17 213.277 15.562 227.669 1.00121.97 ATOM 159 CG ARG q 17 213.230 15.255 229.178 1.00121.78 ATOM 160 CD ARG q 17 214.429 15.795 229.931 1.00121.91 ATOM 161 NE ARG q 17 215.721 15.252 229.465 1.00122.19 ATOM 162 CZ ARG q 17 216.568 14.532 230.213 1.00122.27 ATOM 163 NH1 ARG q 17 216.259 14.239 231.476 1.00122.09 ATOM 164 NH2 ARG q 17 217.725 14.113 229.702 1.00122.54 ATOM 165 N ARG q 18 211.894 15.900 224.618 1.00147.89 ATOM 166 CA ARG q 18 211.375 16.785 223.581 1.00147.95 ATOM 167 C ARG q 18 209.876 16.578 223.411 1.00147.74 ATOM 168 O ARG q 18 209.126 17.539 223.214 1.00147.65 ATOM 169 CB ARG q 18 212.112 16.552 222.251 1.00148.26 ATOM 170 CG ARG q 18 213.557 17.154 222.112 1.00148.51 ATOM 171 CD ARG q 18 213.934 17.186 220.623 1.00148.81 ATOM 172 NE ARG q 18 212.799 17.768 219.879 1.00148.74 ATOM 173 CZ ARG q 18 212.506 17.557 218.586 1.00148.91 ATOM 174 NH1 ARG q 18 211.431 18.159 218.042 1.00148.84 ATOM 175 NH2 ARG q 18 213.276 16.748 217.838 1.00149.17 ATOM 176 N LYS q 19 209.425 15.328 223.510 1.00113.42 ATOM 177 CA LYS q 19 208.000 15.013 223.415 1.00113.22 ATOM 178 C LYS q 19 207.220 15.594 224.591 1.00112.92 ATOM 179 O LYS q 19 206.136 16.166 224.422 1.00112.78 ATOM 180 CB LYS q 19 207.828 13.494 223.346 1.00113.24 ATOM 181 CG LYS q 19 206.417 12.989 223.501 1.00113.02 ATOM 182 CD LYS q 19 205.796 12.746 222.140 1.00113.15 ATOM 183 CE LYS q 19 205.023 11.431 222.104 1.00113.09 ATOM 184 NZ LYS q 19 205.924 10.259 222.318 1.00113.22 ATOM 185 N VAL q 20 207.763 15.442 225.801 1.00101.98 ATOM 186 CA VAL q 20 207.119 15.968 226.996 1.00101.72 ATOM 187 C VAL q 20 207.132 17.489 226.990 1.00101.71 ATOM 188 O VAL q 20 206.203 18.130 227.487 1.00101.50 ATOM 189 CB VAL q 20 207.807 15.395 228.249 1.00101.68 ATOM 190 CG1 VAL q 20 207.379 16.151 229.497 1.00101.45 ATOM 191 CG2 VAL q 20 207.516 13.896 228.376 1.00101.64 ATOM 192 N ARG q 21 208.169 18.097 226.438 1.00109.30 ATOM 193 CA ARG q 21 208.139 19.544 226.370 1.00109.31 ATOM 194 C ARG q 21 207.167 20.000 225.315 1.00109.31 ATOM 195 O ARG q 21 206.587 21.080 225.435 1.00109.22 ATOM 196 CB ARG q 21 209.538 20.103 226.096 1.00109.56 ATOM 197 CG ARG q 21 209.756 21.471 226.725 1.00109.53 ATOM 198 CD ARG q 21 211.166 21.626 227.236 1.00109.70 ATOM 199 NE ARG q 21 212.071 22.227 226.260 1.00109.98 ATOM 200 CZ ARG q 21 212.133 23.530 225.991 1.00110.06 ATOM 201 NH1 ARG q 21 211.323 24.381 226.613 1.00109.87 ATOM 202 NH2 ARG q 21 213.008 23.977 225.089 1.00110.33 ATOM 203 N ALA q 22 206.961 19.174 224.299 1.00122.75 ATOM 204 CA ALA q 22 206.015 19.492 223.243 1.00122.77 ATOM 205 C ALA q 22 204.569 19.471 223.722 1.00122.49 ATOM 206 O ALA q 22 203.694 19.993 223.015 1.00122.47 ATOM 207 CB ALA q 22 206.193 18.518 222.070 1.00122.97 ATOM 208 N ARG q 23 204.290 18.877 224.888 1.00112.19 ATOM 209 CA ARG q 23 202.941 18.950 225.442 1.00111.93 ATOM 210 C ARG q 23 202.501 20.400 225.617 1.00111.85 ATOM 211 O ARG q 23 201.478 20.822 225.061 1.00111.80 ATOM 212 CB ARG q 23 202.877 18.206 226.765 1.00111.73 ATOM 213 CG ARG q 23 201.743 17.256 226.814 1.00111.58 ATOM 214 CD ARG q 23 202.123 15.871 226.323 1.00111.71 ATOM 215 NE ARG q 23 202.138 14.966 227.461 1.00111.58 ATOM 216 CZ ARG q 23 201.058 14.552 228.132 1.00111.36 ATOM 217 NH1 ARG q 23 199.832 14.933 227.775 1.00111.23 ATOM 218 NH2 ARG q 23 201.217 13.739 229.178 1.00111.26 ATOM 219 N SER q 24 203.319 21.202 226.299 1.00109.51 ATOM 220 CA SER q 24 202.997 22.598 226.573 1.00109.45 ATOM 221 C SER q 24 203.271 23.514 225.385 1.00109.67 ATOM 222 O SER q 24 203.148 24.742 225.527 1.00109.67 ATOM 223 CB SER q 24 203.790 23.092 227.773 1.00109.41 ATOM 224 OG SER q 24 205.164 23.042 227.458 1.00109.65 ATOM 225 N LYS q 25 203.680 22.940 224.247 1.00149.45 ATOM 226 CA LYS q 25 203.832 23.616 222.946 1.00149.68 ATOM 227 C LYS q 25 205.159 24.350 222.875 1.00149.90 ATOM 228 O LYS q 25 206.202 23.784 223.226 1.00149.97 ATOM 229 CB LYS q 25 202.666 24.584 222.674 1.00149.59 ATOM 230 CG LYS q 25 201.224 24.011 222.930 1.00149.34 ATOM 231 CD LYS q 25 200.821 22.880 221.957 1.00149.41 ATOM 232 CE LYS q 25 199.303 22.720 221.892 1.00149.23 ATOM 233 NZ LYS q 25 198.769 22.583 220.496 1.00149.39 TER