HEADER LYASE 31-DEC-69 5O5C TITLE The crystal structure of DfoJ, the desferrioxamine biosynthetic TITLE 2 pathway lysine decarboxylase from the fire blight disease pathogen TITLE 3 Erwinia amylovora COMPND MOL_ID: 1; COMPND 2 MOLECULE: Putative decarboxylase involved in desferrioxamine COMPND 3 biosynthesis; COMPND 4 CHAIN: A, B, C, D, E, F; COMPND 5 EC: 4.1.1.-; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.10 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER F 79 REMARK 465 LEU F 80 REMARK 465 HIS F 354 DBREF 5O5C F 1 517 UNP D4I245 D4I245_ERWA 1 517 SEQRES 1 F 307 MET THR GLU THR VAL LYS GLY VAL GLU LYS PRO PHE SER SEQRES 2 F 307 GLY ILE LEU PRO HIS GLU LEU ALA ARG GLU PHE SER GLY SEQRES 3 F 307 VAL ASP LEU ASP GLN SER LEU GLY SER ASN GLU ALA ALA SEQRES 4 F 307 LEU GLU GLU LEU LYS LYS LEU TYR LEU ARG ASP ALA VAL SEQRES 5 F 307 TRP PHE HIS HIS PRO LYS TYR VAL ALA HIS LEU ASN CYS SEQRES 6 F 307 PRO VAL VAL LEU PRO SER LEU LEU ALA GLU GLN ILE MET SEQRES 7 F 307 ALA ALA VAL ASN SER SER VAL ASP THR TRP ASP GLN SER SEQRES 8 F 307 ALA GLY GLY THR LEU ILE GLU GLN LYS VAL ILE ASP TRP SEQRES 9 F 307 THR LEU SER ARG ILE GLY LEU PRO ALA GLY ALA ASP GLY SEQRES 10 F 307 ILE PHE THR SER GLY GLY THR GLN SER ASN LEU MET ALA SEQRES 11 F 307 MET LEU LEU ALA ARG ASP SER TRP CYS ALA ALA HIS HIS SEQRES 12 F 307 PRO GLY HIS LEU ILE LYS HIS ARG GLY LEU PRO HIS ASP SEQRES 13 F 307 ALA ALA LYS TRP ARG VAL PHE THR SER LYS LEU SER HIS SEQRES 14 F 307 PHE SER ILE GLN LYS SER MET ALA ILE LEU GLY LEU GLY SEQRES 15 F 307 TYR ASP ALA VAL ILE PRO VAL ASP TYR ASP GLU ARG TYR SEQRES 16 F 307 ARG MET ASP VAL ASP CYS LEU LYS GLN GLU VAL GLN ARG SEQRES 17 F 307 CYS LEU GLN GLN GLY LEU ILE PRO VAL ALA VAL VAL ALA SEQRES 18 F 307 THR SER GLY THR THR ASP PHE GLY SER ILE ASP PRO LEU SEQRES 19 F 307 GLY ALA ILE SER GLU LEU CYS LYS HIS HIS GLY MET TRP SEQRES 20 F 307 MET HIS VAL ASP ALA ALA TYR GLY CYS GLY LEU LEU VAL SEQRES 21 F 307 SER GLU SER HIS ARG PRO ARG LEU ALA GLY ILE GLU LYS SEQRES 22 F 307 ALA ASP SER VAL THR VAL ASP TYR HIS LYS SER PHE PHE SEQRES 23 F 307 GLN THR VAL SER CYS GLY ALA PHE PHE VAL ARG ASP LYS SEQRES 24 F 307 HIS HIS LEU SER HIS VAL THR HIS SEQRES 1 F 20 GLN THR THR ARG ARG PHE ASP ALA LEU LYS MET TRP LEU SEQRES 2 F 20 THR LEU ARG VAL SER GLY PRO ATOM 1 N GLN F 376 67.279 111.165 -15.464 1.00 22.95 ATOM 2 CA GLN F 376 67.757 110.274 -16.493 1.00 25.03 ATOM 3 C GLN F 376 67.258 108.948 -16.021 1.00 22.48 ATOM 4 O GLN F 376 66.918 108.801 -14.852 1.00 19.95 ATOM 5 CB GLN F 376 69.264 110.244 -16.607 1.00 28.29 ATOM 6 CG GLN F 376 69.897 111.587 -16.485 1.00 30.17 ATOM 7 CD GLN F 376 71.380 111.543 -16.553 1.00 26.74 ATOM 8 OE1 GLN F 376 72.059 111.755 -15.560 1.00 33.72 ATOM 9 NE2 GLN F 376 71.893 111.350 -17.719 1.00 23.73 ATOM 10 N THR F 377 67.129 108.021 -16.949 1.00 21.01 ATOM 11 CA THR F 377 66.969 106.619 -16.600 1.00 21.67 ATOM 12 C THR F 377 68.314 105.854 -16.729 1.00 19.13 ATOM 13 O THR F 377 69.115 105.937 -15.796 1.00 16.59 ATOM 14 CB THR F 377 65.744 105.998 -17.274 1.00 23.76 ATOM 15 OG1 THR F 377 64.666 106.942 -17.262 1.00 27.27 ATOM 16 CG2 THR F 377 65.288 104.738 -16.540 1.00 24.46 ATOM 17 N THR F 378 68.601 105.107 -17.796 1.00 19.50 ATOM 18 CA THR F 378 69.929 104.434 -17.876 1.00 20.22 ATOM 19 C THR F 378 70.980 105.461 -17.604 1.00 20.91 ATOM 20 O THR F 378 70.938 106.555 -18.172 1.00 24.01 ATOM 21 CB THR F 378 70.196 103.765 -19.267 1.00 17.97 ATOM 22 OG1 THR F 378 69.169 102.836 -19.500 1.00 17.87 ATOM 23 CG2 THR F 378 71.455 103.059 -19.297 1.00 18.17 ATOM 24 N ARG F 379 71.955 105.147 -16.753 1.00 21.24 ATOM 25 CA ARG F 379 72.980 106.157 -16.455 1.00 22.26 ATOM 26 C ARG F 379 74.286 105.477 -16.068 1.00 20.69 ATOM 27 O ARG F 379 74.305 104.480 -15.359 1.00 20.05 ATOM 28 CB ARG F 379 72.447 107.077 -15.350 1.00 24.87 ATOM 29 CG ARG F 379 73.403 108.153 -14.872 1.00 27.81 ATOM 30 CD ARG F 379 72.724 109.107 -13.903 1.00 29.87 ATOM 31 NE ARG F 379 72.293 108.477 -12.655 1.00 33.73 ATOM 32 CZ ARG F 379 73.041 108.279 -11.572 1.00 35.27 ATOM 33 NH1 ARG F 379 74.323 108.587 -11.550 1.00 44.85 ATOM 34 NH2 ARG F 379 72.511 107.722 -10.509 1.00 41.48 ATOM 35 N ARG F 380 75.371 106.023 -16.528 1.00 20.49 ATOM 36 CA ARG F 380 76.674 105.367 -16.385 1.00 22.71 ATOM 37 C ARG F 380 77.288 105.620 -15.004 1.00 23.05 ATOM 38 O ARG F 380 76.882 106.533 -14.268 1.00 21.00 ATOM 39 CB ARG F 380 77.610 105.735 -17.531 1.00 22.75 ATOM 40 CG ARG F 380 78.152 107.120 -17.514 1.00 27.77 ATOM 41 CD ARG F 380 78.567 107.705 -18.860 1.00 31.61 ATOM 42 NE ARG F 380 77.929 109.006 -18.853 1.00 41.10 ATOM 43 CZ ARG F 380 77.515 109.723 -19.893 1.00 55.11 ATOM 44 NH1 ARG F 380 77.792 109.360 -21.143 1.00 66.71 ATOM 45 NH2 ARG F 380 76.865 110.873 -19.667 1.00 54.77 ATOM 46 N PHE F 381 78.298 104.832 -14.680 1.00 23.11 ATOM 47 CA PHE F 381 78.919 104.896 -13.349 1.00 23.26 ATOM 48 C PHE F 381 79.964 106.006 -13.233 1.00 20.56 ATOM 49 O PHE F 381 81.084 105.759 -12.914 1.00 20.12 ATOM 50 CB PHE F 381 79.475 103.511 -12.998 1.00 25.15 ATOM 51 CG PHE F 381 79.934 103.346 -11.569 1.00 28.03 ATOM 52 CD1 PHE F 381 79.427 104.106 -10.503 1.00 29.96 ATOM 53 CD2 PHE F 381 80.851 102.360 -11.286 1.00 29.63 ATOM 54 CE1 PHE F 381 79.878 103.890 -9.208 1.00 33.67 ATOM 55 CE2 PHE F 381 81.319 102.151 -10.007 1.00 30.54 ATOM 56 CZ PHE F 381 80.836 102.908 -8.958 1.00 33.01 ATOM 57 N ASP F 382 79.522 107.253 -13.396 1.00 20.13 ATOM 58 CA ASP F 382 80.415 108.422 -13.408 1.00 18.43 ATOM 59 C ASP F 382 81.032 108.734 -12.073 1.00 19.07 ATOM 60 O ASP F 382 82.165 109.287 -12.007 1.00 22.27 ATOM 61 CB ASP F 382 79.720 109.656 -13.933 1.00 17.79 ATOM 62 CG ASP F 382 79.688 109.714 -15.430 1.00 20.48 ATOM 63 OD1 ASP F 382 80.581 109.122 -16.098 1.00 24.60 ATOM 64 OD2 ASP F 382 78.816 110.422 -15.969 1.00 21.60 ATOM 65 N ALA F 383 80.324 108.386 -11.017 1.00 17.56 ATOM 66 CA ALA F 383 80.902 108.380 -9.683 1.00 18.37 ATOM 67 C ALA F 383 82.213 107.569 -9.481 1.00 16.21 ATOM 68 O ALA F 383 83.067 107.972 -8.735 1.00 18.90 ATOM 69 CB ALA F 383 79.862 108.031 -8.659 1.00 17.87 ATOM 70 N LEU F 384 82.410 106.481 -10.183 1.00 18.91 ATOM 71 CA LEU F 384 83.683 105.730 -10.072 1.00 18.80 ATOM 72 C LEU F 384 84.939 106.575 -10.312 1.00 20.87 ATOM 73 O LEU F 384 86.017 106.284 -9.759 1.00 19.89 ATOM 74 CB LEU F 384 83.701 104.559 -10.979 1.00 19.37 ATOM 75 CG LEU F 384 84.887 103.643 -10.784 1.00 19.43 ATOM 76 CD1 LEU F 384 84.797 102.902 -9.460 1.00 19.41 ATOM 77 CD2 LEU F 384 84.991 102.714 -11.978 1.00 21.72 ATOM 78 N LYS F 385 84.780 107.641 -11.087 1.00 21.84 ATOM 79 CA LYS F 385 85.829 108.594 -11.331 1.00 25.01 ATOM 80 C LYS F 385 86.369 109.375 -10.126 1.00 23.71 ATOM 81 O LYS F 385 87.622 109.498 -9.920 1.00 20.36 ATOM 82 CB LYS F 385 85.372 109.549 -12.435 1.00 27.89 ATOM 83 CG LYS F 385 85.639 108.939 -13.807 1.00 36.97 ATOM 84 CD LYS F 385 85.356 109.888 -14.977 1.00 40.44 ATOM 85 CE LYS F 385 83.864 110.089 -15.184 1.00 44.25 ATOM 86 NZ LYS F 385 83.617 110.601 -16.573 1.00 45.39 ATOM 87 N MET F 386 85.420 109.971 -9.406 1.00 21.84 ATOM 88 CA MET F 386 85.704 110.693 -8.215 1.00 23.08 ATOM 89 C MET F 386 86.067 109.717 -7.079 1.00 23.00 ATOM 90 O MET F 386 86.901 110.023 -6.235 1.00 23.63 ATOM 91 CB MET F 386 84.501 111.570 -7.837 1.00 23.46 ATOM 92 CG MET F 386 84.485 112.856 -8.635 1.00 23.99 ATOM 93 SD MET F 386 85.781 113.843 -7.927 1.00 25.07 ATOM 94 CE MET F 386 87.196 113.852 -8.870 1.00 26.96 ATOM 95 N TRP F 387 85.486 108.531 -7.121 1.00 23.58 ATOM 96 CA TRP F 387 85.794 107.500 -6.163 1.00 23.64 ATOM 97 C TRP F 387 87.258 107.061 -6.305 1.00 23.91 ATOM 98 O TRP F 387 88.013 107.142 -5.330 1.00 26.33 ATOM 99 CB TRP F 387 84.809 106.336 -6.310 1.00 28.45 ATOM 100 CG TRP F 387 84.674 105.645 -5.077 1.00 31.99 ATOM 101 CD1 TRP F 387 83.858 105.971 -4.010 1.00 31.88 ATOM 102 CD2 TRP F 387 85.419 104.538 -4.687 1.00 32.78 ATOM 103 NE1 TRP F 387 84.069 105.115 -2.977 1.00 30.53 ATOM 104 CE2 TRP F 387 85.024 104.212 -3.370 1.00 33.30 ATOM 105 CE3 TRP F 387 86.389 103.782 -5.315 1.00 32.37 ATOM 106 CZ2 TRP F 387 85.560 103.147 -2.689 1.00 36.95 ATOM 107 CZ3 TRP F 387 86.940 102.766 -4.641 1.00 35.45 ATOM 108 CH2 TRP F 387 86.529 102.438 -3.340 1.00 40.74 ATOM 109 N LEU F 388 87.673 106.618 -7.489 1.00 21.43 ATOM 110 CA LEU F 388 89.055 106.216 -7.664 1.00 25.62 ATOM 111 C LEU F 388 90.047 107.366 -7.475 1.00 26.07 ATOM 112 O LEU F 388 91.097 107.158 -6.885 1.00 28.52 ATOM 113 CB LEU F 388 89.322 105.465 -8.961 1.00 26.73 ATOM 114 CG LEU F 388 88.835 104.019 -8.957 1.00 26.18 ATOM 115 CD1 LEU F 388 88.909 103.469 -10.368 1.00 26.76 ATOM 116 CD2 LEU F 388 89.636 103.140 -8.023 1.00 27.48 ATOM 117 N THR F 389 89.693 108.580 -7.877 1.00 23.58 ATOM 118 CA THR F 389 90.595 109.715 -7.664 1.00 21.87 ATOM 119 C THR F 389 90.899 109.889 -6.194 1.00 20.59 ATOM 120 O THR F 389 92.046 110.106 -5.816 1.00 19.24 ATOM 121 CB THR F 389 90.029 111.020 -8.236 1.00 22.30 ATOM 122 OG1 THR F 389 89.849 110.880 -9.645 1.00 22.19 ATOM 123 CG2 THR F 389 90.979 112.222 -8.003 1.00 25.65 ATOM 124 N LEU F 390 89.860 109.847 -5.377 1.00 19.33 ATOM 125 CA LEU F 390 90.006 110.092 -3.971 1.00 20.16 ATOM 126 C LEU F 390 90.705 108.924 -3.330 1.00 21.70 ATOM 127 O LEU F 390 91.607 109.110 -2.554 1.00 21.99 ATOM 128 CB LEU F 390 88.669 110.329 -3.318 1.00 20.77 ATOM 129 CG LEU F 390 88.009 111.634 -3.645 1.00 21.27 ATOM 130 CD1 LEU F 390 86.554 111.515 -3.254 1.00 25.20 ATOM 131 CD2 LEU F 390 88.644 112.824 -2.940 1.00 23.17 ATOM 132 N ARG F 391 90.356 107.709 -3.711 1.00 21.96 ATOM 133 CA ARG F 391 91.079 106.575 -3.164 1.00 24.89 ATOM 134 C ARG F 391 92.596 106.527 -3.495 1.00 25.31 ATOM 135 O ARG F 391 93.423 106.225 -2.611 1.00 23.51 ATOM 136 CB ARG F 391 90.348 105.322 -3.527 1.00 28.48 ATOM 137 CG ARG F 391 90.731 104.558 -4.716 1.00 48.51 ATOM 138 CD ARG F 391 90.280 103.156 -4.381 1.00 66.87 ATOM 139 NE ARG F 391 91.094 102.641 -3.266 1.00 84.30 ATOM 140 CZ ARG F 391 91.130 101.372 -2.891 1.00 95.73 ATOM 141 NH1 ARG F 391 90.409 100.476 -3.577 1.00101.78 ATOM 142 NH2 ARG F 391 91.922 101.006 -1.867 1.00100.59 ATOM 143 N VAL F 392 92.961 106.856 -4.733 1.00 23.48 ATOM 144 CA VAL F 392 94.372 106.809 -5.174 1.00 26.20 ATOM 145 C VAL F 392 95.171 108.072 -4.747 1.00 25.58 ATOM 146 O VAL F 392 96.161 107.994 -4.068 1.00 22.11 ATOM 147 CB VAL F 392 94.433 106.641 -6.708 1.00 26.09 ATOM 148 CG1 VAL F 392 95.854 106.729 -7.242 1.00 27.01 ATOM 149 CG2 VAL F 392 93.770 105.316 -7.119 1.00 30.21 ATOM 150 N SER F 393 94.726 109.230 -5.201 1.00 27.66 ATOM 151 CA SER F 393 95.461 110.472 -5.027 1.00 28.86 ATOM 152 C SER F 393 94.803 111.122 -3.837 1.00 31.14 ATOM 153 O SER F 393 93.612 110.952 -3.634 1.00 37.27 ATOM 154 CB SER F 393 95.289 111.372 -6.258 1.00 29.57 ATOM 155 OG SER F 393 95.182 110.634 -7.457 1.00 31.34 ATOM 156 N GLY F 394 95.482 111.887 -3.026 1.00 28.19 ATOM 157 CA GLY F 394 94.619 112.613 -1.989 1.00 34.81 ATOM 158 C GLY F 394 93.426 113.445 -2.551 1.00 30.27 ATOM 159 O GLY F 394 93.457 113.846 -3.704 1.00 35.44 ATOM 160 N PRO F 395 92.362 113.718 -1.755 1.00 30.72 ATOM 161 CA PRO F 395 91.588 114.994 -1.896 1.00 29.99 ATOM 162 C PRO F 395 92.461 116.237 -1.707 1.00 30.62 ATOM 163 O PRO F 395 92.223 117.285 -2.325 1.00 27.78 ATOM 164 CB PRO F 395 90.547 114.915 -0.748 1.00 29.66 ATOM 165 CG PRO F 395 90.915 113.705 0.039 1.00 29.27 ATOM 166 CD PRO F 395 91.636 112.791 -0.897 1.00 29.31 ATOM 167 N1 PLP F 601 77.054 127.039 -14.657 1.00 38.58 ATOM 168 C2 PLP F 601 78.288 127.593 -14.762 1.00 40.01 ATOM 169 C2A PLP F 601 78.671 128.768 -13.900 1.00 37.72 ATOM 170 C3 PLP F 601 79.243 127.016 -15.731 1.00 37.77 ATOM 171 O3 PLP F 601 80.502 127.495 -15.881 1.00 40.71 ATOM 172 C4 PLP F 601 78.764 125.859 -16.527 1.00 38.46 ATOM 173 C4A PLP F 601 79.598 125.196 -17.523 1.00 40.64 ATOM 174 C5 PLP F 601 77.397 125.362 -16.323 1.00 36.51 ATOM 175 C6 PLP F 601 76.609 125.991 -15.375 1.00 36.90 ATOM 176 C5A PLP F 601 76.908 124.195 -17.157 1.00 36.61 ATOM 177 O4P PLP F 601 77.714 123.033 -16.972 1.00 38.54 ATOM 178 P PLP F 601 77.800 121.848 -18.055 1.00 41.41 ATOM 179 O1P PLP F 601 78.591 122.403 -19.198 1.00 36.83 ATOM 180 O2P PLP F 601 76.408 121.400 -18.455 1.00 37.54 ATOM 181 O3P PLP F 601 78.549 120.764 -17.298 1.00 42.72 TER