HEADER VIRAL PROTEIN/IMMUNE SYSTEM 31-DEC-69 5TOJ TITLE Crystal structure of the RSV F glycoprotein in complex with the TITLE 2 neutralizing single-domain antibody F-VHH-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: Fusion glycoprotein F0, Fibritin chimera; COMPND 3 CHAIN: A, B, C; COMPND 4 MUTATION: YES; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.30 ANGSTORMS DBREF 5TOJ B 1 513 UNP P03420 FUS_HRSVA 1 513 DBREF 5TOJ B 514 550 PDB 5TOJ 5TOJ 514 550 SEQRES 1 B 34 ILE GLY GLY TYR ILE PRO GLU ALA PRO ARG ASP GLY GLN SEQRES 2 B 34 ALA TYR VAL ARG LYS ASP GLY GLU TRP VAL LEU LEU SER SEQRES 3 B 34 THR PHE LEU GLY GLY LEU VAL PRO ATOM 1 N ILE B 516 70.930 -40.177 194.996 1.00 75.44 ATOM 2 CA ILE B 516 70.919 -38.720 194.947 1.00 75.19 ATOM 3 C ILE B 516 70.784 -38.142 196.347 1.00 76.99 ATOM 4 O ILE B 516 71.519 -37.225 196.713 1.00 79.29 ATOM 5 CB ILE B 516 69.802 -38.196 194.036 1.00 72.14 ATOM 6 CG1 ILE B 516 70.152 -38.488 192.576 1.00 69.68 ATOM 7 CG2 ILE B 516 69.602 -36.706 194.245 1.00 72.60 ATOM 8 CD1 ILE B 516 69.069 -38.109 191.595 1.00 72.19 ATOM 9 N GLY B 517 69.841 -38.657 197.127 1.00 82.32 ATOM 10 CA GLY B 517 69.676 -38.203 198.498 1.00 84.81 ATOM 11 C GLY B 517 70.918 -38.474 199.336 1.00 85.12 ATOM 12 O GLY B 517 71.002 -38.072 200.495 1.00 85.95 ATOM 13 N GLY B 518 71.873 -39.180 198.739 1.00 79.17 ATOM 14 CA GLY B 518 73.136 -39.509 199.366 1.00 74.05 ATOM 15 C GLY B 518 74.243 -38.498 199.096 1.00 73.16 ATOM 16 O GLY B 518 75.298 -38.564 199.720 1.00 77.72 ATOM 17 N TYR B 519 74.021 -37.556 198.179 1.00 68.72 ATOM 18 CA TYR B 519 75.113 -36.681 197.749 1.00 61.65 ATOM 19 C TYR B 519 75.189 -35.358 198.493 1.00 64.24 ATOM 20 O TYR B 519 74.171 -34.769 198.849 1.00 66.68 ATOM 21 CB TYR B 519 74.969 -36.354 196.263 1.00 58.36 ATOM 22 CG TYR B 519 75.021 -37.525 195.312 1.00 58.48 ATOM 23 CD1 TYR B 519 75.742 -38.672 195.612 1.00 59.66 ATOM 24 CD2 TYR B 519 74.349 -37.471 194.100 1.00 61.28 ATOM 25 CE1 TYR B 519 75.787 -39.733 194.728 1.00 62.39 ATOM 26 CE2 TYR B 519 74.385 -38.522 193.216 1.00 65.52 ATOM 27 CZ TYR B 519 75.102 -39.650 193.532 1.00 66.66 ATOM 28 OH TYR B 519 75.127 -40.694 192.642 1.00 69.16 ATOM 29 N ILE B 520 76.420 -34.890 198.683 1.00 65.56 ATOM 30 CA ILE B 520 76.726 -33.664 199.427 1.00 65.10 ATOM 31 C ILE B 520 76.868 -32.446 198.501 1.00 64.07 ATOM 32 O ILE B 520 77.373 -32.573 197.378 1.00 61.84 ATOM 33 CB ILE B 520 78.004 -33.824 200.292 1.00 68.04 ATOM 34 CG1 ILE B 520 79.230 -34.125 199.428 1.00 69.84 ATOM 35 CG2 ILE B 520 77.801 -34.909 201.336 1.00 62.96 ATOM 36 CD1 ILE B 520 80.502 -34.295 200.229 1.00 67.78 ATOM 37 N PRO B 521 76.396 -31.269 198.955 1.00 59.91 ATOM 38 CA PRO B 521 76.511 -30.023 198.184 1.00 60.57 ATOM 39 C PRO B 521 77.929 -29.454 198.161 1.00 61.67 ATOM 40 O PRO B 521 78.837 -29.994 198.793 1.00 54.28 ATOM 41 CB PRO B 521 75.569 -29.067 198.921 1.00 57.55 ATOM 42 CG PRO B 521 75.589 -29.554 200.319 1.00 55.98 ATOM 43 CD PRO B 521 75.693 -31.057 200.231 1.00 52.96 ATOM 44 N GLU B 522 78.098 -28.345 197.451 1.00 62.68 ATOM 45 CA GLU B 522 79.407 -27.735 197.250 1.00 65.14 ATOM 46 C GLU B 522 79.955 -27.154 198.546 1.00 66.91 ATOM 47 O GLU B 522 79.195 -26.743 199.422 1.00 68.22 ATOM 48 CB GLU B 522 79.307 -26.648 196.171 1.00 71.97 ATOM 49 CG GLU B 522 80.598 -25.904 195.840 1.00 74.42 ATOM 50 CD GLU B 522 81.681 -26.805 195.285 1.00 73.19 ATOM 51 OE1 GLU B 522 82.668 -27.071 196.003 1.00 71.63 ATOM 52 OE2 GLU B 522 81.555 -27.230 194.119 1.00 74.64 ATOM 53 N ALA B 523 81.278 -27.139 198.670 1.00 69.40 ATOM 54 CA ALA B 523 81.935 -26.474 199.785 1.00 67.04 ATOM 55 C ALA B 523 82.071 -24.983 199.473 1.00 68.10 ATOM 56 O ALA B 523 82.013 -24.591 198.307 1.00 70.76 ATOM 57 CB ALA B 523 83.295 -27.107 200.052 1.00 66.00 ATOM 58 N PRO B 524 82.251 -24.150 200.512 1.00 63.49 ATOM 59 CA PRO B 524 82.417 -22.697 200.375 1.00 66.61 ATOM 60 C PRO B 524 83.449 -22.286 199.325 1.00 75.48 ATOM 61 O PRO B 524 84.460 -22.965 199.139 1.00 76.15 ATOM 62 CB PRO B 524 82.874 -22.269 201.772 1.00 64.96 ATOM 63 CG PRO B 524 82.457 -23.394 202.701 1.00 64.03 ATOM 64 CD PRO B 524 81.899 -24.522 201.889 1.00 63.75 ATOM 65 N ARG B 525 83.194 -21.160 198.664 1.00 82.98 ATOM 66 CA ARG B 525 84.067 -20.690 197.597 1.00 88.07 ATOM 67 C ARG B 525 84.948 -19.527 198.014 1.00 90.56 ATOM 68 O ARG B 525 84.815 -18.410 197.515 1.00 94.64 ATOM 69 CB ARG B 525 83.246 -20.283 196.377 1.00 95.08 ATOM 70 CG ARG B 525 82.371 -21.374 195.803 1.00100.83 ATOM 71 CD ARG B 525 82.920 -21.789 194.450 1.00107.86 ATOM 72 NE ARG B 525 81.932 -22.478 193.629 1.00113.36 ATOM 73 CZ ARG B 525 80.986 -21.861 192.930 1.00118.80 ATOM 74 NH1 ARG B 525 80.887 -20.538 192.961 1.00120.44 ATOM 75 NH2 ARG B 525 80.131 -22.568 192.204 1.00122.43 ATOM 76 N ASP B 526 85.831 -19.809 198.958 1.00 91.71 ATOM 77 CA ASP B 526 86.815 -18.852 199.430 1.00 93.47 ATOM 78 C ASP B 526 88.207 -19.475 199.280 1.00 93.22 ATOM 79 O ASP B 526 88.325 -20.684 199.084 1.00 97.92 ATOM 80 CB ASP B 526 86.510 -18.441 200.870 1.00 95.18 ATOM 81 CG ASP B 526 86.263 -19.634 201.784 1.00 95.95 ATOM 82 OD1 ASP B 526 86.790 -20.730 201.510 1.00 97.66 ATOM 83 OD2 ASP B 526 85.519 -19.478 202.776 1.00 96.07 ATOM 84 N GLY B 527 89.259 -18.673 199.383 1.00 87.47 ATOM 85 CA GLY B 527 90.620 -19.177 199.261 1.00 87.55 ATOM 86 C GLY B 527 91.029 -20.248 200.263 1.00 87.62 ATOM 87 O GLY B 527 92.209 -20.372 200.602 1.00 94.21 ATOM 88 N GLN B 528 90.062 -21.023 200.746 1.00 79.38 ATOM 89 CA GLN B 528 90.343 -22.055 201.732 1.00 73.02 ATOM 90 C GLN B 528 89.939 -23.471 201.319 1.00 69.86 ATOM 91 O GLN B 528 88.894 -23.696 200.701 1.00 69.35 ATOM 92 CB GLN B 528 89.650 -21.701 203.045 1.00 73.26 ATOM 93 CG GLN B 528 89.431 -20.214 203.253 1.00 78.29 ATOM 94 CD GLN B 528 89.673 -19.788 204.683 1.00 83.62 ATOM 95 OE1 GLN B 528 90.274 -20.524 205.468 1.00 86.61 ATOM 96 NE2 GLN B 528 89.208 -18.595 205.033 1.00 84.78 ATOM 97 N ALA B 529 90.803 -24.419 201.667 1.00 66.83 ATOM 98 CA ALA B 529 90.588 -25.834 201.402 1.00 64.89 ATOM 99 C ALA B 529 89.658 -26.438 202.449 1.00 64.81 ATOM 100 O ALA B 529 89.700 -26.044 203.616 1.00 67.02 ATOM 101 CB ALA B 529 91.914 -26.575 201.374 1.00 65.25 ATOM 102 N TYR B 530 88.828 -27.393 202.043 1.00 63.67 ATOM 103 CA TYR B 530 87.877 -28.002 202.968 1.00 63.39 ATOM 104 C TYR B 530 87.981 -29.520 202.996 1.00 63.28 ATOM 105 O TYR B 530 88.256 -30.155 201.978 1.00 65.50 ATOM 106 CB TYR B 530 86.451 -27.597 202.599 1.00 64.38 ATOM 107 CG TYR B 530 86.110 -26.198 203.028 1.00 65.44 ATOM 108 CD1 TYR B 530 85.689 -25.930 204.320 1.00 65.70 ATOM 109 CD2 TYR B 530 86.243 -25.136 202.146 1.00 67.87 ATOM 110 CE1 TYR B 530 85.387 -24.642 204.716 1.00 68.24 ATOM 111 CE2 TYR B 530 85.949 -23.848 202.532 1.00 69.85 ATOM 112 CZ TYR B 530 85.525 -23.603 203.819 1.00 68.41 ATOM 113 OH TYR B 530 85.226 -22.314 204.204 1.00 67.55 ATOM 114 N VAL B 531 87.790 -30.091 204.180 1.00 58.59 ATOM 115 CA VAL B 531 87.674 -31.533 204.330 1.00 56.91 ATOM 116 C VAL B 531 86.304 -31.835 204.914 1.00 58.51 ATOM 117 O VAL B 531 85.642 -30.938 205.434 1.00 60.48 ATOM 118 CB VAL B 531 88.775 -32.110 205.233 1.00 56.33 ATOM 119 CG1 VAL B 531 90.143 -31.782 204.668 1.00 55.71 ATOM 120 CG2 VAL B 531 88.633 -31.576 206.649 1.00 47.70 ATOM 121 N ARG B 532 85.881 -33.092 204.848 1.00 59.75 ATOM 122 CA ARG B 532 84.534 -33.442 205.288 1.00 63.96 ATOM 123 C ARG B 532 84.580 -34.086 206.675 1.00 64.74 ATOM 124 O ARG B 532 85.303 -35.060 206.885 1.00 64.57 ATOM 125 CB ARG B 532 83.872 -34.386 204.277 1.00 67.46 ATOM 126 CG ARG B 532 82.358 -34.537 204.428 1.00 67.77 ATOM 127 CD ARG B 532 81.641 -33.246 204.056 1.00 67.75 ATOM 128 NE ARG B 532 80.196 -33.421 203.918 1.00 68.68 ATOM 129 CZ ARG B 532 79.331 -32.415 203.801 1.00 72.07 ATOM 130 NH1 ARG B 532 78.033 -32.656 203.681 1.00 71.49 ATOM 131 NH2 ARG B 532 79.763 -31.163 203.801 1.00 74.81 ATOM 132 N LYS B 533 83.823 -33.527 207.620 1.00 67.77 ATOM 133 CA LYS B 533 83.753 -34.074 208.978 1.00 70.82 ATOM 134 C LYS B 533 82.395 -33.813 209.628 1.00 71.36 ATOM 135 O LYS B 533 81.929 -32.674 209.675 1.00 67.28 ATOM 136 CB LYS B 533 84.877 -33.500 209.855 1.00 70.84 ATOM 137 CG LYS B 533 84.672 -33.682 211.364 1.00 74.40 ATOM 138 CD LYS B 533 85.919 -33.271 212.148 1.00 77.21 ATOM 139 CE LYS B 533 85.648 -33.088 213.637 1.00 75.78 ATOM 140 NZ LYS B 533 84.953 -31.797 213.924 1.00 75.46 ATOM 141 N ASP B 534 81.781 -34.882 210.133 1.00 75.67 ATOM 142 CA ASP B 534 80.505 -34.817 210.848 1.00 78.34 ATOM 143 C ASP B 534 79.365 -34.224 210.019 1.00 74.73 ATOM 144 O ASP B 534 78.469 -33.567 210.556 1.00 71.52 ATOM 145 CB ASP B 534 80.665 -34.023 212.147 1.00 81.60 ATOM 146 CG ASP B 534 81.168 -34.880 213.287 1.00 84.72 ATOM 147 OD1 ASP B 534 80.959 -36.112 213.231 1.00 83.72 ATOM 148 OD2 ASP B 534 81.773 -34.324 214.231 1.00 87.07 ATOM 149 N GLY B 535 79.401 -34.467 208.713 1.00 74.45 ATOM 150 CA GLY B 535 78.312 -34.076 207.838 1.00 76.74 ATOM 151 C GLY B 535 78.361 -32.649 207.333 1.00 79.68 ATOM 152 O GLY B 535 77.398 -32.173 206.737 1.00 86.82 ATOM 153 N GLU B 536 79.473 -31.962 207.572 1.00 78.04 ATOM 154 CA GLU B 536 79.653 -30.602 207.071 1.00 80.08 ATOM 155 C GLU B 536 81.064 -30.378 206.528 1.00 76.02 ATOM 156 O GLU B 536 81.935 -31.237 206.678 1.00 75.82 ATOM 157 CB GLU B 536 79.351 -29.587 208.172 1.00 84.07 ATOM 158 CG GLU B 536 80.007 -29.914 209.497 1.00 94.89 ATOM 159 CD GLU B 536 79.362 -29.183 210.653 1.00108.49 ATOM 160 OE1 GLU B 536 78.116 -29.081 210.667 1.00112.35 ATOM 161 OE2 GLU B 536 80.099 -28.712 211.545 1.00113.69 ATOM 162 N TRP B 537 81.283 -29.238 205.874 1.00 67.14 ATOM 163 CA TRP B 537 82.621 -28.909 205.401 1.00 60.62 ATOM 164 C TRP B 537 83.404 -28.176 206.481 1.00 61.74 ATOM 165 O TRP B 537 82.939 -27.177 207.029 1.00 59.08 ATOM 166 CB TRP B 537 82.585 -28.051 204.138 1.00 58.29 ATOM 167 CG TRP B 537 82.046 -28.739 202.931 1.00 58.81 ATOM 168 CD1 TRP B 537 80.846 -28.510 202.326 1.00 62.35 ATOM 169 CD2 TRP B 537 82.662 -29.814 202.210 1.00 57.28 ATOM 170 NE1 TRP B 537 80.694 -29.349 201.247 1.00 62.21 ATOM 171 CE2 TRP B 537 81.792 -30.164 201.160 1.00 58.98 ATOM 172 CE3 TRP B 537 83.869 -30.505 202.343 1.00 55.77 ATOM 173 CZ2 TRP B 537 82.091 -31.173 200.249 1.00 58.69 ATOM 174 CZ3 TRP B 537 84.163 -31.507 201.438 1.00 51.41 ATOM 175 CH2 TRP B 537 83.279 -31.831 200.404 1.00 52.18 ATOM 176 N VAL B 538 84.608 -28.665 206.761 1.00 65.64 ATOM 177 CA VAL B 538 85.465 -28.078 207.781 1.00 64.97 ATOM 178 C VAL B 538 86.792 -27.655 207.161 1.00 66.60 ATOM 179 O VAL B 538 87.303 -28.326 206.261 1.00 69.20 ATOM 180 CB VAL B 538 85.725 -29.062 208.935 1.00 65.40 ATOM 181 CG1 VAL B 538 86.510 -28.386 210.047 1.00 68.94 ATOM 182 CG2 VAL B 538 84.413 -29.609 209.468 1.00 65.89 ATOM 183 N LEU B 539 87.333 -26.536 207.635 1.00 63.55 ATOM 184 CA LEU B 539 88.608 -26.021 207.150 1.00 59.88 ATOM 185 C LEU B 539 89.743 -27.017 207.357 1.00 58.96 ATOM 186 O LEU B 539 89.875 -27.598 208.431 1.00 55.88 ATOM 187 CB LEU B 539 88.941 -24.706 207.847 1.00 56.78 ATOM 188 CG LEU B 539 88.150 -23.514 207.317 1.00 58.38 ATOM 189 CD1 LEU B 539 88.553 -22.233 208.024 1.00 60.30 ATOM 190 CD2 LEU B 539 88.371 -23.394 205.833 1.00 61.61 ATOM 191 N LEU B 540 90.552 -27.219 206.319 1.00 62.12 ATOM 192 CA LEU B 540 91.711 -28.106 206.404 1.00 61.12 ATOM 193 C LEU B 540 92.701 -27.653 207.472 1.00 67.05 ATOM 194 O LEU B 540 93.280 -28.470 208.189 1.00 68.53 ATOM 195 CB LEU B 540 92.421 -28.180 205.052 1.00 52.16 ATOM 196 CG LEU B 540 93.692 -29.029 205.029 1.00 51.19 ATOM 197 CD1 LEU B 540 93.398 -30.456 205.452 1.00 51.53 ATOM 198 CD2 LEU B 540 94.337 -28.993 203.657 1.00 57.43 ATOM 199 N SER B 541 92.876 -26.339 207.565 1.00 67.26 ATOM 200 CA SER B 541 93.769 -25.711 208.528 1.00 64.79 ATOM 201 C SER B 541 93.497 -26.142 209.964 1.00 67.31 ATOM 202 O SER B 541 94.417 -26.206 210.779 1.00 72.64 ATOM 203 CB SER B 541 93.653 -24.195 208.419 1.00 67.89 ATOM 204 OG SER B 541 92.322 -23.778 208.664 1.00 71.35 ATOM 205 N THR B 542 92.229 -26.413 210.268 1.00 62.72 ATOM 206 CA THR B 542 91.804 -26.829 211.605 1.00 63.59 ATOM 207 C THR B 542 92.614 -28.004 212.139 1.00 62.28 ATOM 208 O THR B 542 92.920 -28.081 213.328 1.00 64.88 ATOM 209 CB THR B 542 90.308 -27.237 211.608 1.00 85.07 ATOM 210 OG1 THR B 542 89.505 -26.161 211.108 1.00 87.83 ATOM 211 CG2 THR B 542 89.839 -27.615 213.006 1.00 82.64 ATOM 212 N PHE B 543 92.983 -28.901 211.235 1.00 60.40 ATOM 213 CA PHE B 543 93.556 -30.187 211.603 1.00 62.60 ATOM 214 C PHE B 543 95.063 -30.274 211.410 1.00 67.51 ATOM 215 O PHE B 543 95.644 -31.351 211.522 1.00 69.18 ATOM 216 CB PHE B 543 92.863 -31.292 210.815 1.00 61.62 ATOM 217 CG PHE B 543 91.373 -31.283 210.964 1.00 62.17 ATOM 218 CD1 PHE B 543 90.771 -31.905 212.045 1.00 62.68 ATOM 219 CD2 PHE B 543 90.573 -30.642 210.037 1.00 64.36 ATOM 220 CE1 PHE B 543 89.402 -31.895 212.191 1.00 63.75 ATOM 221 CE2 PHE B 543 89.201 -30.628 210.179 1.00 64.19 ATOM 222 CZ PHE B 543 88.616 -31.254 211.258 1.00 63.14 ATOM 223 N LEU B 544 95.703 -29.144 211.141 1.00 71.79 ATOM 224 CA LEU B 544 97.122 -29.167 210.823 1.00 75.68 ATOM 225 C LEU B 544 98.000 -28.712 211.977 1.00 91.81 ATOM 226 O LEU B 544 99.224 -28.834 211.910 1.00 90.32 ATOM 227 CB LEU B 544 97.383 -28.288 209.603 1.00 66.04 ATOM 228 CG LEU B 544 96.665 -28.745 208.336 1.00 61.61 ATOM 229 CD1 LEU B 544 97.051 -27.865 207.174 1.00 60.89 ATOM 230 CD2 LEU B 544 96.981 -30.201 208.041 1.00 61.66 ATOM 231 N GLY B 545 97.375 -28.199 213.034 1.00 64.26 ATOM 232 CA GLY B 545 98.103 -27.834 214.238 1.00 68.27 ATOM 233 C GLY B 545 98.868 -29.029 214.776 1.00 67.15 ATOM 234 O GLY B 545 98.272 -30.054 215.111 1.00 69.11 ATOM 235 N GLY B 546 100.185 -28.886 214.895 1.00 65.90 ATOM 236 CA GLY B 546 101.034 -29.991 215.297 1.00 62.29 ATOM 237 C GLY B 546 102.013 -30.557 214.275 1.00 58.35 ATOM 238 O GLY B 546 102.778 -31.456 214.611 1.00 61.17 ATOM 239 N LEU B 547 101.985 -30.093 213.029 1.00 60.08 ATOM 240 CA LEU B 547 102.952 -30.593 212.043 1.00 62.92 ATOM 241 C LEU B 547 104.313 -29.948 212.259 1.00 65.84 ATOM 242 O LEU B 547 105.316 -30.389 211.701 1.00 69.35 ATOM 243 CB LEU B 547 102.481 -30.362 210.606 1.00 61.57 ATOM 244 CG LEU B 547 101.177 -31.035 210.193 1.00 58.93 ATOM 245 CD1 LEU B 547 100.721 -30.528 208.843 1.00 61.19 ATOM 246 CD2 LEU B 547 101.420 -32.536 210.125 1.00 57.21 ATOM 247 N VAL B 548 104.337 -28.896 213.070 1.00 66.09 ATOM 248 CA VAL B 548 105.584 -28.281 213.499 1.00 66.87 ATOM 249 C VAL B 548 105.691 -28.306 215.027 1.00 72.48 ATOM 250 O VAL B 548 104.798 -27.818 215.731 1.00 71.02 ATOM 251 CB VAL B 548 105.707 -26.832 213.002 1.00 62.17 ATOM 252 CG1 VAL B 548 107.032 -26.236 213.434 1.00 60.46 ATOM 253 CG2 VAL B 548 105.582 -26.783 211.501 1.00 62.97 ATOM 254 N PRO B 549 106.790 -28.874 215.546 1.00 72.86 ATOM 255 CA PRO B 549 107.847 -29.493 214.739 1.00 71.26 ATOM 256 C PRO B 549 107.732 -31.014 214.645 1.00 62.03 ATOM 257 O PRO B 549 108.456 -31.606 213.840 1.00 56.97 ATOM 258 CB PRO B 549 109.117 -29.089 215.485 1.00 73.56 ATOM 259 CG PRO B 549 108.684 -29.028 216.917 1.00 72.08 ATOM 260 CD PRO B 549 107.224 -28.644 216.935 1.00 70.57 TER