HEADER transcription/dna 30-JAN-17 5UND TITLE Crystal Structure of CTCF(ZnF 4-10) With 28-mer DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.55 ANGSTORMS DBREF 5UND A 348 547 UNP P49711 CTCF_HUMAN 348 547 SEQRES 1 A 28 GLY GLU ARG PRO PHE GLN CYS SER LEU CYS SER TYR ALA SEQRES 2 A 28 SER ARG ASP THR TYR LYS LEU LYS ARG HIS MET ARG THR SEQRES 3 A 28 HIS SER ATOM 1 N GLY A 375 1.582 5.313 4.390 1.00105.73 ATOM 2 CA GLY A 375 2.218 6.529 3.928 1.00109.91 ATOM 3 C GLY A 375 1.493 7.801 4.294 1.00108.38 ATOM 4 O GLY A 375 1.762 8.847 3.696 1.00110.80 ATOM 5 N GLU A 376 0.576 7.744 5.257 1.00 95.22 ATOM 6 CA GLU A 376 -0.147 8.935 5.680 1.00 92.12 ATOM 7 C GLU A 376 0.804 9.924 6.345 1.00100.21 ATOM 8 O GLU A 376 1.719 9.537 7.077 1.00 97.22 ATOM 9 CB GLU A 376 -1.275 8.555 6.640 1.00101.84 ATOM 10 CG GLU A 376 -2.103 9.731 7.132 1.00109.25 ATOM 11 CD GLU A 376 -3.143 9.321 8.156 1.00109.02 ATOM 12 OE1 GLU A 376 -4.060 10.125 8.426 1.00114.32 ATOM 13 OE2 GLU A 376 -3.042 8.196 8.690 1.00105.20 ATOM 14 N ARG A 377 0.590 11.210 6.076 1.00111.29 ATOM 15 CA ARG A 377 1.428 12.285 6.604 1.00101.65 ATOM 16 C ARG A 377 0.517 13.373 7.155 1.00108.56 ATOM 17 O ARG A 377 0.218 14.359 6.468 1.00114.76 ATOM 18 CB ARG A 377 2.370 12.826 5.528 1.00 99.18 ATOM 19 CG ARG A 377 3.311 11.782 4.946 1.00 99.70 ATOM 20 CD ARG A 377 4.184 12.363 3.845 1.00102.47 ATOM 21 NE ARG A 377 5.138 11.384 3.332 1.00 97.36 ATOM 22 CZ ARG A 377 6.348 11.182 3.845 1.00 99.55 ATOM 23 NH1 ARG A 377 6.755 11.892 4.889 1.00 86.28 ATOM 24 NH2 ARG A 377 7.152 10.269 3.317 1.00105.04 ATOM 25 N PRO A 378 0.057 13.225 8.398 1.00109.23 ATOM 26 CA PRO A 378 -0.933 14.166 8.939 1.00119.38 ATOM 27 C PRO A 378 -0.320 15.440 9.499 1.00128.86 ATOM 28 O PRO A 378 -0.956 16.131 10.301 1.00136.58 ATOM 29 CB PRO A 378 -1.620 13.355 10.051 1.00110.73 ATOM 30 CG PRO A 378 -1.055 11.946 9.953 1.00103.47 ATOM 31 CD PRO A 378 0.278 12.090 9.304 1.00 95.71 ATOM 32 N PHE A 379 0.908 15.765 9.095 1.00129.50 ATOM 33 CA PHE A 379 1.609 16.939 9.618 1.00121.93 ATOM 34 C PHE A 379 2.313 17.630 8.454 1.00122.92 ATOM 35 O PHE A 379 3.430 17.258 8.085 1.00122.40 ATOM 36 CB PHE A 379 2.590 16.545 10.716 1.00118.05 ATOM 37 CG PHE A 379 1.962 15.748 11.825 1.00122.67 ATOM 38 CD1 PHE A 379 1.315 16.383 12.872 1.00125.18 ATOM 39 CD2 PHE A 379 2.007 14.364 11.812 1.00120.12 ATOM 40 CE1 PHE A 379 0.731 15.652 13.890 1.00121.01 ATOM 41 CE2 PHE A 379 1.425 13.628 12.826 1.00119.62 ATOM 42 CZ PHE A 379 0.785 14.273 13.866 1.00119.12 ATOM 43 N GLN A 380 1.654 18.636 7.884 1.00116.87 ATOM 44 CA GLN A 380 2.189 19.380 6.753 1.00119.16 ATOM 45 C GLN A 380 2.958 20.603 7.236 1.00109.25 ATOM 46 O GLN A 380 2.500 21.331 8.120 1.00113.83 ATOM 47 CB GLN A 380 1.058 19.811 5.815 1.00129.73 ATOM 48 CG GLN A 380 1.476 20.796 4.732 1.00130.12 ATOM 49 CD GLN A 380 2.423 20.186 3.719 1.00133.54 ATOM 50 OE1 GLN A 380 2.372 18.986 3.449 1.00141.60 ATOM 51 NE2 GLN A 380 3.295 21.011 3.153 1.00130.84 ATOM 52 N CYS A 381 4.135 20.820 6.653 1.00109.92 ATOM 53 CA CYS A 381 4.917 22.007 6.970 1.00 91.98 ATOM 54 C CYS A 381 4.264 23.241 6.361 1.00101.53 ATOM 55 O CYS A 381 3.853 23.230 5.196 1.00108.87 ATOM 56 CB CYS A 381 6.348 21.860 6.456 1.00 80.84 ATOM 57 SG CYS A 381 7.357 23.355 6.638 1.00 80.21 ATOM 58 N SER A 382 4.175 24.309 7.151 1.00108.27 ATOM 59 CA SER A 382 3.555 25.553 6.713 1.00111.83 ATOM 60 C SER A 382 4.471 26.403 5.839 1.00109.31 ATOM 61 O SER A 382 4.092 27.524 5.485 1.00118.79 ATOM 62 CB SER A 382 3.099 26.366 7.927 1.00105.37 ATOM 63 N LEU A 383 5.656 25.904 5.485 1.00103.82 ATOM 64 CA LEU A 383 6.606 26.646 4.666 1.00 95.64 ATOM 65 C LEU A 383 6.785 26.021 3.290 1.00 99.13 ATOM 66 O LEU A 383 6.470 26.653 2.277 1.00123.75 ATOM 67 CB LEU A 383 7.957 26.749 5.388 1.00 93.77 ATOM 68 N CYS A 384 7.290 24.791 3.220 1.00 93.48 ATOM 69 CA CYS A 384 7.486 24.093 1.960 1.00101.05 ATOM 70 C CYS A 384 6.469 22.958 1.836 1.00117.36 ATOM 71 O CYS A 384 5.556 22.817 2.657 1.00114.98 ATOM 72 CB CYS A 384 8.928 23.588 1.848 1.00105.73 ATOM 73 SG CYS A 384 9.414 22.335 3.064 1.00103.99 ATOM 74 N SER A 385 6.633 22.142 0.794 1.00116.87 ATOM 75 CA SER A 385 5.711 21.057 0.489 1.00120.93 ATOM 76 C SER A 385 6.026 19.776 1.256 1.00120.69 ATOM 77 O SER A 385 5.602 18.693 0.835 1.00118.59 ATOM 78 CB SER A 385 5.714 20.776 -1.015 1.00123.84 ATOM 79 OG SER A 385 7.017 20.444 -1.464 1.00120.63 ATOM 80 N TYR A 386 6.752 19.873 2.366 1.00128.16 ATOM 81 CA TYR A 386 7.101 18.693 3.142 1.00116.26 ATOM 82 C TYR A 386 5.978 18.324 4.102 1.00116.27 ATOM 83 O TYR A 386 5.375 19.189 4.743 1.00120.43 ATOM 84 CB TYR A 386 8.395 18.922 3.924 1.00104.51 ATOM 85 CG TYR A 386 8.676 17.844 4.947 1.00 99.40 ATOM 86 CD1 TYR A 386 9.091 16.578 4.555 1.00 95.97 ATOM 87 CD2 TYR A 386 8.520 18.091 6.305 1.00 89.85 ATOM 88 CE1 TYR A 386 9.345 15.588 5.486 1.00 86.35 ATOM 89 CE2 TYR A 386 8.773 17.108 7.244 1.00 89.24 ATOM 90 CZ TYR A 386 9.185 15.859 6.829 1.00 89.06 ATOM 91 OH TYR A 386 9.437 14.879 7.760 1.00 88.79 ATOM 92 N ALA A 387 5.701 17.026 4.194 1.00112.98 ATOM 93 CA ALA A 387 4.727 16.486 5.129 1.00113.98 ATOM 94 C ALA A 387 5.368 15.339 5.894 1.00105.90 ATOM 95 O ALA A 387 6.154 14.571 5.332 1.00115.85 ATOM 96 CB ALA A 387 3.463 16.010 4.407 1.00124.27 ATOM 97 N SER A 388 5.035 15.228 7.177 1.00 82.37 ATOM 98 CA SER A 388 5.680 14.277 8.067 1.00 89.10 ATOM 99 C SER A 388 4.666 13.303 8.652 1.00 98.94 ATOM 100 O SER A 388 3.469 13.592 8.741 1.00108.93 ATOM 101 CB SER A 388 6.413 14.994 9.205 1.00 74.33 ATOM 102 OG SER A 388 6.750 14.079 10.231 1.00 78.37 ATOM 103 N ARG A 389 5.172 12.138 9.060 1.00 94.14 ATOM 104 CA ARG A 389 4.357 11.134 9.732 1.00 93.30 ATOM 105 C ARG A 389 4.325 11.319 11.242 1.00106.74 ATOM 106 O ARG A 389 3.360 10.895 11.889 1.00121.46 ATOM 107 CB ARG A 389 4.874 9.727 9.414 1.00 90.80 ATOM 108 CG ARG A 389 4.844 9.355 7.942 1.00109.81 ATOM 109 CD ARG A 389 5.298 7.916 7.736 1.00120.12 ATOM 110 NE ARG A 389 5.146 7.482 6.350 1.00131.26 ATOM 111 CZ ARG A 389 6.101 7.566 5.430 1.00125.30 ATOM 112 NH1 ARG A 389 7.287 8.071 5.745 1.00103.78 ATOM 113 NH2 ARG A 389 5.871 7.145 4.193 1.00123.58 ATOM 114 N ASP A 390 5.354 11.936 11.816 1.00115.33 ATOM 115 CA ASP A 390 5.458 12.134 13.252 1.00115.30 ATOM 116 C ASP A 390 5.499 13.625 13.564 1.00124.31 ATOM 117 O ASP A 390 5.859 14.450 12.720 1.00123.17 ATOM 118 CB ASP A 390 6.707 11.439 13.815 1.00121.12 ATOM 119 CG ASP A 390 6.718 11.385 15.332 1.00125.42 ATOM 120 OD1 ASP A 390 5.697 11.749 15.952 1.00130.54 ATOM 121 OD2 ASP A 390 7.751 10.978 15.905 1.00123.00 ATOM 122 N THR A 391 5.121 13.964 14.799 1.00104.11 ATOM 123 CA THR A 391 5.131 15.361 15.220 1.00110.97 ATOM 124 C THR A 391 6.555 15.892 15.327 1.00111.64 ATOM 125 O THR A 391 6.864 16.975 14.817 1.00115.63 ATOM 126 CB THR A 391 4.406 15.515 16.557 1.00116.69 ATOM 127 OG1 THR A 391 5.200 14.935 17.600 1.00117.35 ATOM 128 CG2 THR A 391 3.057 14.819 16.513 1.00118.91 ATOM 129 N TYR A 392 7.438 15.141 15.991 1.00109.21 ATOM 130 CA TYR A 392 8.804 15.611 16.191 1.00 98.51 ATOM 131 C TYR A 392 9.567 15.711 14.877 1.00 97.67 ATOM 132 O TYR A 392 10.443 16.573 14.738 1.00 99.87 ATOM 133 CB TYR A 392 9.544 14.692 17.164 1.00 97.23 ATOM 134 CG TYR A 392 10.954 15.145 17.471 1.00 99.97 ATOM 135 CD1 TYR A 392 11.194 16.153 18.397 1.00 96.04 ATOM 136 CD2 TYR A 392 12.046 14.566 16.834 1.00 99.36 ATOM 137 CE1 TYR A 392 12.480 16.572 18.679 1.00100.55 ATOM 138 CE2 TYR A 392 13.336 14.979 17.109 1.00 91.89 ATOM 139 CZ TYR A 392 13.547 15.982 18.033 1.00103.98 ATOM 140 OH TYR A 392 14.830 16.396 18.312 1.00102.21 ATOM 141 N LYS A 393 9.256 14.845 13.909 1.00 89.79 ATOM 142 CA LYS A 393 9.905 14.938 12.606 1.00 86.27 ATOM 143 C LYS A 393 9.583 16.257 11.918 1.00 85.24 ATOM 144 O LYS A 393 10.428 16.809 11.204 1.00 78.35 ATOM 145 CB LYS A 393 9.489 13.761 11.723 1.00 89.97 ATOM 146 CG LYS A 393 9.881 12.398 12.266 1.00 94.32 ATOM 147 CD LYS A 393 11.377 12.180 12.176 1.00 95.09 ATOM 148 CE LYS A 393 11.785 10.850 12.786 1.00 99.51 ATOM 149 NZ LYS A 393 11.505 10.803 14.249 1.00103.56 ATOM 150 N LEU A 394 8.370 16.778 12.119 1.00 91.37 ATOM 151 CA LEU A 394 8.028 18.081 11.558 1.00 97.19 ATOM 152 C LEU A 394 8.754 19.202 12.291 1.00 83.71 ATOM 153 O LEU A 394 9.256 20.140 11.661 1.00 69.19 ATOM 154 CB LEU A 394 6.515 18.294 11.608 1.00100.13 ATOM 155 CG LEU A 394 6.016 19.650 11.105 1.00103.40 ATOM 156 CD1 LEU A 394 6.444 19.882 9.663 1.00104.65 ATOM 157 CD2 LEU A 394 4.507 19.750 11.243 1.00110.79 ATOM 158 N LYS A 395 8.815 19.124 13.623 1.00 84.99 ATOM 159 CA LYS A 395 9.568 20.112 14.388 1.00 86.61 ATOM 160 C LYS A 395 11.049 20.056 14.039 1.00 80.48 ATOM 161 O LYS A 395 11.719 21.093 13.965 1.00 83.63 ATOM 162 CB LYS A 395 9.358 19.888 15.886 1.00 91.14 ATOM 163 CG LYS A 395 10.102 20.872 16.774 1.00101.54 ATOM 164 CD LYS A 395 9.873 20.572 18.247 1.00106.24 ATOM 165 CE LYS A 395 10.606 21.568 19.133 1.00110.74 ATOM 166 NZ LYS A 395 10.380 21.301 20.581 1.00109.02 ATOM 167 N ARG A 396 11.576 18.850 13.816 1.00 70.92 ATOM 168 CA ARG A 396 12.956 18.714 13.365 1.00 82.82 ATOM 169 C ARG A 396 13.151 19.321 11.983 1.00 81.47 ATOM 170 O ARG A 396 14.230 19.841 11.680 1.00 84.39 ATOM 171 CB ARG A 396 13.357 17.238 13.364 1.00 73.16 ATOM 172 CG ARG A 396 14.845 16.989 13.232 1.00 52.22 ATOM 173 CD ARG A 396 15.156 15.506 13.355 1.00 46.69 ATOM 174 NE ARG A 396 14.645 14.746 12.219 1.00 60.31 ATOM 175 CZ ARG A 396 14.791 13.433 12.072 1.00 62.23 ATOM 176 NH1 ARG A 396 15.435 12.728 12.993 1.00 64.55 ATOM 177 NH2 ARG A 396 14.295 12.825 11.004 1.00 49.81 ATOM 178 N HIS A 397 12.121 19.266 11.135 1.00 83.09 ATOM 179 CA HIS A 397 12.205 19.879 9.815 1.00 72.95 ATOM 180 C HIS A 397 12.148 21.398 9.895 1.00 72.85 ATOM 181 O HIS A 397 12.762 22.084 9.070 1.00 82.18 ATOM 182 CB HIS A 397 11.081 19.352 8.924 1.00 85.65 ATOM 183 CG HIS A 397 10.904 20.124 7.654 1.00103.69 ATOM 184 ND1 HIS A 397 11.802 20.056 6.611 1.00110.71 ATOM 185 CD2 HIS A 397 9.936 20.984 7.261 1.00109.01 ATOM 186 CE1 HIS A 397 11.393 20.839 5.629 1.00112.14 ATOM 187 NE2 HIS A 397 10.262 21.413 5.998 1.00117.71 ATOM 188 N MET A 398 11.426 21.940 10.879 1.00 73.50 ATOM 189 CA MET A 398 11.316 23.388 11.009 1.00 75.35 ATOM 190 C MET A 398 12.642 24.043 11.370 1.00 92.43 ATOM 191 O MET A 398 12.786 25.257 11.193 1.00101.96 ATOM 192 CB MET A 398 10.255 23.743 12.050 1.00 89.91 ATOM 193 CG MET A 398 8.843 23.383 11.625 1.00104.61 ATOM 194 SD MET A 398 8.421 24.086 10.019 1.00114.97 ATOM 195 CE MET A 398 8.613 25.836 10.355 1.00108.40 ATOM 196 N ARG A 399 13.610 23.272 11.872 1.00105.87 ATOM 197 CA ARG A 399 14.937 23.825 12.120 1.00 96.17 ATOM 198 C ARG A 399 15.611 24.252 10.823 1.00 92.03 ATOM 199 O ARG A 399 16.449 25.162 10.829 1.00 93.83 ATOM 200 CB ARG A 399 15.802 22.803 12.859 1.00 86.52 ATOM 201 CG ARG A 399 15.264 22.404 14.222 1.00 76.98 ATOM 202 CD ARG A 399 15.941 21.142 14.734 1.00 67.24 ATOM 203 NE ARG A 399 15.361 20.687 15.994 1.00 79.64 ATOM 204 CZ ARG A 399 15.560 19.482 16.519 1.00 83.48 ATOM 205 NH1 ARG A 399 16.324 18.599 15.889 1.00 65.32 ATOM 206 NH2 ARG A 399 14.989 19.157 17.671 1.00 92.42 ATOM 207 N THR A 400 15.256 23.614 9.704 1.00 73.56 ATOM 208 CA THR A 400 15.846 23.981 8.420 1.00 81.45 ATOM 209 C THR A 400 15.329 25.325 7.926 1.00 92.49 ATOM 210 O THR A 400 16.047 26.042 7.219 1.00101.72 ATOM 211 CB THR A 400 15.564 22.896 7.380 1.00 81.58 ATOM 212 OG1 THR A 400 14.152 22.798 7.161 1.00 73.40 ATOM 213 CG2 THR A 400 16.090 21.550 7.857 1.00 71.41 ATOM 214 N HIS A 401 14.094 25.684 8.282 1.00 91.71 ATOM 215 CA HIS A 401 13.546 26.970 7.865 1.00 89.41 ATOM 216 C HIS A 401 13.978 28.093 8.801 1.00 85.68 ATOM 217 O HIS A 401 14.237 29.214 8.351 1.00 96.91 ATOM 218 CB HIS A 401 12.020 26.897 7.795 1.00 97.68 ATOM 219 CG HIS A 401 11.507 25.880 6.824 1.00101.67 ATOM 220 ND1 HIS A 401 11.688 25.993 5.462 1.00105.03 ATOM 221 CD2 HIS A 401 10.814 24.733 7.017 1.00105.68 ATOM 222 CE1 HIS A 401 11.132 24.957 4.859 1.00106.02 ATOM 223 NE2 HIS A 401 10.594 24.178 5.780 1.00114.61 ATOM 224 N SER A 402 14.061 27.812 10.101 1.00 82.07 ATOM 225 CA SER A 402 14.425 28.819 11.088 1.00 87.98 ATOM 226 C SER A 402 15.923 28.889 11.352 1.00 90.52 ATOM 227 O SER A 402 16.385 29.870 11.944 1.00 91.66 ATOM 228 CB SER A 402 13.697 28.550 12.409 1.00 90.85 ATOM 229 OG SER A 402 14.119 27.324 12.979 1.00 91.05 ATOM 230 ZN ZN A 602 9.120 22.897 5.252 1.00 98.48 TER