HEADER transcription/dna 30-JAN-17 5UND TITLE Crystal Structure of CTCF(ZnF 4-10) With 28-mer DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.55 ANGSTORMS DBREF 5UND A 348 547 UNP P49711 CTCF_HUMAN 348 547 SEQRES 1 A 30 GLY GLU LYS PRO TYR GLU CYS TYR ILE CYS HIS ALA ARG SEQRES 2 A 30 PHE THR GLN SER GLY THR MET LYS MET HIS ILE LEU GLN SEQRES 3 A 30 LYS HIS THR GLU ATOM 1 N GLY A 403 16.690 27.886 10.930 1.00 88.25 ATOM 2 CA GLY A 403 18.110 27.882 11.212 1.00 83.37 ATOM 3 C GLY A 403 18.461 27.589 12.651 1.00 79.44 ATOM 4 O GLY A 403 19.587 27.864 13.072 1.00 68.91 ATOM 5 N GLU A 404 17.526 27.038 13.421 1.00 83.36 ATOM 6 CA GLU A 404 17.778 26.746 14.825 1.00 82.37 ATOM 7 C GLU A 404 18.718 25.553 14.958 1.00 91.54 ATOM 8 O GLU A 404 18.502 24.505 14.341 1.00 93.00 ATOM 9 CB GLU A 404 16.463 26.468 15.550 1.00 80.69 ATOM 10 CG GLU A 404 16.614 26.190 17.034 1.00 82.36 ATOM 11 CD GLU A 404 15.294 25.855 17.696 1.00 93.49 ATOM 12 OE1 GLU A 404 14.264 25.844 16.990 1.00 98.11 ATOM 13 OE2 GLU A 404 15.286 25.602 18.919 1.00 94.49 ATOM 14 N LYS A 405 19.764 25.716 15.766 1.00 80.15 ATOM 15 CA LYS A 405 20.765 24.675 15.999 1.00 68.29 ATOM 16 C LYS A 405 20.935 24.509 17.502 1.00 63.90 ATOM 17 O LYS A 405 21.857 25.073 18.106 1.00 72.24 ATOM 18 CB LYS A 405 22.088 25.024 15.316 1.00 70.90 ATOM 19 CG LYS A 405 21.971 25.231 13.815 1.00 64.65 ATOM 20 CD LYS A 405 23.314 25.574 13.197 1.00 64.82 ATOM 21 CE LYS A 405 23.228 25.619 11.682 1.00 58.85 ATOM 22 NZ LYS A 405 24.564 25.830 11.062 1.00 78.61 ATOM 23 N PRO A 406 20.058 23.732 18.143 1.00 67.67 ATOM 24 CA PRO A 406 20.067 23.633 19.607 1.00 72.57 ATOM 25 C PRO A 406 21.096 22.672 20.182 1.00 66.29 ATOM 26 O PRO A 406 21.044 22.393 21.382 1.00 78.89 ATOM 27 CB PRO A 406 18.643 23.139 19.908 1.00 80.65 ATOM 28 CG PRO A 406 18.300 22.301 18.729 1.00 65.71 ATOM 29 CD PRO A 406 18.959 22.960 17.539 1.00 57.12 ATOM 30 N TYR A 407 22.025 22.158 19.382 1.00 62.31 ATOM 31 CA TYR A 407 23.023 21.204 19.850 1.00 46.67 ATOM 32 C TYR A 407 24.410 21.775 19.600 1.00 60.85 ATOM 33 O TYR A 407 24.806 21.968 18.446 1.00 71.66 ATOM 34 CB TYR A 407 22.854 19.852 19.153 1.00 53.26 ATOM 35 CG TYR A 407 21.448 19.305 19.263 1.00 67.01 ATOM 36 CD1 TYR A 407 21.013 18.687 20.428 1.00 63.08 ATOM 37 CD2 TYR A 407 20.551 19.421 18.207 1.00 65.80 ATOM 38 CE1 TYR A 407 19.728 18.194 20.539 1.00 65.71 ATOM 39 CE2 TYR A 407 19.263 18.929 18.308 1.00 66.08 ATOM 40 CZ TYR A 407 18.858 18.317 19.478 1.00 73.71 ATOM 41 OH TYR A 407 17.579 17.825 19.590 1.00 73.63 ATOM 42 N GLU A 408 25.142 22.042 20.678 1.00 41.29 ATOM 43 CA GLU A 408 26.455 22.671 20.616 1.00 45.96 ATOM 44 C GLU A 408 27.499 21.706 21.159 1.00 45.04 ATOM 45 O GLU A 408 27.381 21.234 22.296 1.00 54.69 ATOM 46 CB GLU A 408 26.472 23.980 21.410 1.00 40.52 ATOM 47 CG GLU A 408 27.743 24.795 21.238 1.00 56.07 ATOM 48 CD GLU A 408 27.767 26.035 22.111 1.00 64.28 ATOM 49 OE1 GLU A 408 28.675 26.148 22.961 1.00 57.41 ATOM 50 OE2 GLU A 408 26.876 26.895 21.950 1.00 74.89 ATOM 51 N CYS A 409 28.516 21.418 20.349 1.00 55.34 ATOM 52 CA CYS A 409 29.637 20.604 20.802 1.00 51.96 ATOM 53 C CYS A 409 30.314 21.271 21.991 1.00 45.31 ATOM 54 O CYS A 409 30.791 22.402 21.886 1.00 43.34 ATOM 55 CB CYS A 409 30.632 20.408 19.659 1.00 25.35 ATOM 56 SG CYS A 409 32.178 19.594 20.139 1.00 39.91 ATOM 57 N TYR A 410 30.363 20.574 23.126 1.00 36.27 ATOM 58 CA TYR A 410 30.938 21.202 24.311 1.00 46.98 ATOM 59 C TYR A 410 32.454 21.352 24.232 1.00 43.59 ATOM 60 O TYR A 410 33.040 21.950 25.139 1.00 53.88 ATOM 61 CB TYR A 410 30.551 20.414 25.568 1.00 26.42 ATOM 62 CG TYR A 410 31.251 19.084 25.713 1.00 44.11 ATOM 63 CD1 TYR A 410 30.756 17.944 25.091 1.00 41.31 ATOM 64 CD2 TYR A 410 32.405 18.966 26.481 1.00 27.15 ATOM 65 CE1 TYR A 410 31.394 16.722 25.223 1.00 39.27 ATOM 66 CE2 TYR A 410 33.050 17.750 26.620 1.00 45.76 ATOM 67 CZ TYR A 410 32.541 16.630 25.989 1.00 37.53 ATOM 68 OH TYR A 410 33.183 15.417 26.127 1.00 48.83 ATOM 69 N ILE A 411 33.097 20.847 23.179 1.00 44.72 ATOM 70 CA ILE A 411 34.548 20.935 23.037 1.00 37.38 ATOM 71 C ILE A 411 34.928 22.152 22.203 1.00 48.95 ATOM 72 O ILE A 411 35.687 23.016 22.658 1.00 52.70 ATOM 73 CB ILE A 411 35.127 19.650 22.416 1.00 45.87 ATOM 74 CG1 ILE A 411 34.935 18.461 23.360 1.00 50.59 ATOM 75 CG2 ILE A 411 36.599 19.840 22.095 1.00 28.31 ATOM 76 CD1 ILE A 411 35.761 18.549 24.624 1.00 40.92 ATOM 77 N CYS A 412 34.413 22.226 20.972 1.00 45.01 ATOM 78 CA CYS A 412 34.756 23.306 20.056 1.00 39.42 ATOM 79 C CYS A 412 33.618 24.291 19.832 1.00 31.41 ATOM 80 O CYS A 412 33.835 25.319 19.183 1.00 40.83 ATOM 81 CB CYS A 412 35.207 22.740 18.697 1.00 38.63 ATOM 82 SG CYS A 412 33.864 22.119 17.652 1.00 39.03 ATOM 83 N HIS A 413 32.417 23.992 20.332 1.00 36.88 ATOM 84 CA HIS A 413 31.277 24.912 20.344 1.00 45.59 ATOM 85 C HIS A 413 30.723 25.190 18.952 1.00 53.83 ATOM 86 O HIS A 413 30.172 26.262 18.699 1.00 81.24 ATOM 87 CB HIS A 413 31.628 26.208 21.078 1.00 44.17 ATOM 88 CG HIS A 413 32.166 25.968 22.455 1.00 55.66 ATOM 89 ND1 HIS A 413 31.365 25.586 23.510 1.00 36.40 ATOM 90 CD2 HIS A 413 33.429 26.011 22.940 1.00 52.56 ATOM 91 CE1 HIS A 413 32.108 25.425 24.590 1.00 52.77 ATOM 92 NE2 HIS A 413 33.364 25.679 24.272 1.00 57.20 ATOM 93 N ALA A 414 30.850 24.224 18.050 1.00 55.79 ATOM 94 CA ALA A 414 30.090 24.250 16.814 1.00 43.51 ATOM 95 C ALA A 414 28.671 23.760 17.074 1.00 51.82 ATOM 96 O ALA A 414 28.436 22.913 17.941 1.00 65.07 ATOM 97 CB ALA A 414 30.761 23.382 15.749 1.00 46.86 ATOM 98 N ARG A 415 27.721 24.306 16.321 1.00 48.56 ATOM 99 CA ARG A 415 26.310 24.005 16.511 1.00 62.33 ATOM 100 C ARG A 415 25.779 23.166 15.355 1.00 53.47 ATOM 101 O ARG A 415 26.259 23.260 14.223 1.00 66.60 ATOM 102 CB ARG A 415 25.483 25.287 16.651 1.00 64.52 ATOM 103 CG ARG A 415 25.891 26.152 17.834 1.00 49.16 ATOM 104 CD ARG A 415 24.682 26.760 18.523 1.00 63.70 ATOM 105 NE ARG A 415 25.064 27.535 19.699 1.00 72.40 ATOM 106 CZ ARG A 415 25.121 28.863 19.733 1.00 78.76 ATOM 107 NH1 ARG A 415 24.811 29.570 18.655 1.00 86.02 ATOM 108 NH2 ARG A 415 25.483 29.485 20.848 1.00 79.30 ATOM 109 N PHE A 416 24.779 22.340 15.658 1.00 43.21 ATOM 110 CA PHE A 416 24.241 21.379 14.708 1.00 56.09 ATOM 111 C PHE A 416 22.724 21.346 14.833 1.00 58.14 ATOM 112 O PHE A 416 22.156 21.727 15.860 1.00 54.36 ATOM 113 CB PHE A 416 24.824 19.976 14.935 1.00 56.46 ATOM 114 CG PHE A 416 26.323 19.952 15.046 1.00 54.73 ATOM 115 CD1 PHE A 416 27.109 19.709 13.933 1.00 53.83 ATOM 116 CD2 PHE A 416 26.946 20.171 16.263 1.00 46.88 ATOM 117 CE1 PHE A 416 28.486 19.685 14.031 1.00 40.53 ATOM 118 CE2 PHE A 416 28.322 20.154 16.366 1.00 40.11 ATOM 119 CZ PHE A 416 29.093 19.912 15.249 1.00 43.01 ATOM 120 N THR A 417 22.071 20.873 13.769 1.00 65.14 ATOM 121 CA THR A 417 20.612 20.857 13.738 1.00 68.96 ATOM 122 C THR A 417 20.041 19.663 14.495 1.00 64.88 ATOM 123 O THR A 417 19.023 19.794 15.185 1.00 76.28 ATOM 124 CB THR A 417 20.115 20.849 12.291 1.00 79.06 ATOM 125 OG1 THR A 417 20.510 19.627 11.654 1.00 89.16 ATOM 126 CG2 THR A 417 20.697 22.025 11.521 1.00 67.75 ATOM 127 N GLN A 418 20.673 18.498 14.378 1.00 52.23 ATOM 128 CA GLN A 418 20.204 17.281 15.022 1.00 53.90 ATOM 129 C GLN A 418 21.235 16.785 16.029 1.00 57.28 ATOM 130 O GLN A 418 22.429 17.078 15.925 1.00 67.64 ATOM 131 CB GLN A 418 19.912 16.184 13.991 1.00 66.76 ATOM 132 CG GLN A 418 18.843 16.549 12.975 1.00 63.09 ATOM 133 CD GLN A 418 18.587 15.433 11.981 1.00 72.49 ATOM 134 OE1 GLN A 418 19.258 14.401 12.003 1.00 78.54 ATOM 135 NE2 GLN A 418 17.611 15.635 11.102 1.00 69.37 ATOM 136 N SER A 419 20.754 16.015 17.008 1.00 61.97 ATOM 137 CA SER A 419 21.630 15.545 18.077 1.00 61.17 ATOM 138 C SER A 419 22.597 14.476 17.581 1.00 52.18 ATOM 139 O SER A 419 23.746 14.412 18.035 1.00 48.06 ATOM 140 CB SER A 419 20.797 15.017 19.245 1.00 59.42 ATOM 141 OG SER A 419 19.961 13.949 18.835 1.00 73.61 ATOM 142 N GLY A 420 22.150 13.620 16.658 1.00 47.76 ATOM 143 CA GLY A 420 23.040 12.609 16.112 1.00 55.06 ATOM 144 C GLY A 420 24.202 13.198 15.337 1.00 58.50 ATOM 145 O GLY A 420 25.296 12.627 15.315 1.00 47.16 ATOM 146 N THR A 421 23.984 14.343 14.691 1.00 43.89 ATOM 147 CA THR A 421 25.076 15.028 14.011 1.00 31.53 ATOM 148 C THR A 421 26.142 15.467 15.006 1.00 45.60 ATOM 149 O THR A 421 27.342 15.273 14.778 1.00 48.17 ATOM 150 CB THR A 421 24.533 16.231 13.236 1.00 51.81 ATOM 151 OG1 THR A 421 23.521 15.793 12.323 1.00 52.03 ATOM 152 CG2 THR A 421 25.641 16.912 12.457 1.00 47.08 ATOM 153 N MET A 422 25.718 16.057 16.128 1.00 49.41 ATOM 154 CA MET A 422 26.677 16.503 17.135 1.00 53.36 ATOM 155 C MET A 422 27.427 15.326 17.743 1.00 36.79 ATOM 156 O MET A 422 28.642 15.403 17.964 1.00 36.56 ATOM 157 CB MET A 422 25.968 17.300 18.228 1.00 52.01 ATOM 158 CG MET A 422 26.906 17.810 19.306 1.00 48.37 ATOM 159 SD MET A 422 26.032 18.539 20.697 1.00 57.61 ATOM 160 CE MET A 422 25.066 17.134 21.250 1.00 42.00 ATOM 161 N LYS A 423 26.720 14.226 18.018 1.00 32.61 ATOM 162 CA LYS A 423 27.366 13.044 18.583 1.00 38.92 ATOM 163 C LYS A 423 28.451 12.512 17.655 1.00 44.82 ATOM 164 O LYS A 423 29.580 12.247 18.087 1.00 42.57 ATOM 165 CB LYS A 423 26.323 11.964 18.870 1.00 51.69 ATOM 166 CG LYS A 423 26.897 10.707 19.506 1.00 67.81 ATOM 167 CD LYS A 423 25.803 9.716 19.876 1.00 57.78 ATOM 168 CE LYS A 423 26.389 8.490 20.559 1.00 79.90 ATOM 169 NZ LYS A 423 25.336 7.531 20.995 1.00 96.52 ATOM 170 N MET A 424 28.127 12.351 16.368 1.00 42.62 ATOM 171 CA MET A 424 29.120 11.867 15.412 1.00 33.61 ATOM 172 C MET A 424 30.288 12.838 15.302 1.00 37.89 ATOM 173 O MET A 424 31.452 12.420 15.261 1.00 29.52 ATOM 174 CB MET A 424 28.472 11.646 14.045 1.00 40.76 ATOM 175 CG MET A 424 29.427 11.135 12.978 1.00 45.85 ATOM 176 SD MET A 424 30.015 9.460 13.297 1.00 63.94 ATOM 177 CE MET A 424 28.483 8.538 13.170 1.00 50.58 ATOM 178 N HIS A 425 29.993 14.139 15.262 1.00 27.70 ATOM 179 CA HIS A 425 31.038 15.156 15.284 1.00 25.83 ATOM 180 C HIS A 425 31.985 14.946 16.460 1.00 49.10 ATOM 181 O HIS A 425 33.203 14.832 16.285 1.00 35.32 ATOM 182 CB HIS A 425 30.402 16.545 15.344 1.00 30.37 ATOM 183 CG HIS A 425 31.354 17.626 15.746 1.00 50.04 ATOM 184 ND1 HIS A 425 32.213 18.231 14.854 1.00 49.00 ATOM 185 CD2 HIS A 425 31.582 18.211 16.945 1.00 49.80 ATOM 186 CE1 HIS A 425 32.930 19.143 15.488 1.00 40.58 ATOM 187 NE2 HIS A 425 32.567 19.150 16.757 1.00 47.63 ATOM 188 N ILE A 426 31.430 14.883 17.674 1.00 35.10 ATOM 189 CA ILE A 426 32.256 14.697 18.866 1.00 34.45 ATOM 190 C ILE A 426 33.027 13.387 18.784 1.00 37.66 ATOM 191 O ILE A 426 34.219 13.324 19.112 1.00 52.58 ATOM 192 CB ILE A 426 31.386 14.759 20.136 1.00 31.92 ATOM 193 CG1 ILE A 426 30.774 16.149 20.300 1.00 34.98 ATOM 194 CG2 ILE A 426 32.203 14.391 21.366 1.00 33.15 ATOM 195 CD1 ILE A 426 29.786 16.244 21.441 1.00 39.24 ATOM 196 N LEU A 427 32.362 12.324 18.328 1.00 28.22 ATOM 197 CA LEU A 427 33.015 11.021 18.257 1.00 40.89 ATOM 198 C LEU A 427 34.200 11.040 17.298 1.00 47.32 ATOM 199 O LEU A 427 35.277 10.528 17.623 1.00 56.55 ATOM 200 CB LEU A 427 32.005 9.953 17.840 1.00 34.82 ATOM 201 CG LEU A 427 32.495 8.518 18.033 1.00 66.45 ATOM 202 CD1 LEU A 427 32.631 8.209 19.518 1.00 62.12 ATOM 203 CD2 LEU A 427 31.572 7.521 17.346 1.00 72.62 ATOM 204 N GLN A 428 34.027 11.630 16.114 1.00 34.28 ATOM 205 CA GLN A 428 35.067 11.583 15.094 1.00 34.34 ATOM 206 C GLN A 428 36.100 12.695 15.221 1.00 35.72 ATOM 207 O GLN A 428 37.203 12.551 14.684 1.00 42.95 ATOM 208 CB GLN A 428 34.442 11.635 13.698 1.00 25.31 ATOM 209 CG GLN A 428 33.435 10.524 13.431 1.00 38.85 ATOM 210 CD GLN A 428 34.066 9.143 13.433 1.00 47.03 ATOM 211 OE1 GLN A 428 35.253 8.985 13.137 1.00 47.95 ATOM 212 NE2 GLN A 428 33.272 8.133 13.767 1.00 52.22 ATOM 213 N LYS A 429 35.785 13.790 15.913 1.00 45.42 ATOM 214 CA LYS A 429 36.704 14.917 16.014 1.00 30.40 ATOM 215 C LYS A 429 37.408 15.029 17.357 1.00 44.67 ATOM 216 O LYS A 429 38.554 15.480 17.399 1.00 50.01 ATOM 217 CB LYS A 429 35.965 16.235 15.747 1.00 33.54 ATOM 218 CG LYS A 429 35.481 16.425 14.317 1.00 41.53 ATOM 219 CD LYS A 429 36.643 16.692 13.371 1.00 54.74 ATOM 220 CE LYS A 429 36.151 17.167 12.014 1.00 89.30 ATOM 221 NZ LYS A 429 35.311 18.394 12.126 1.00 86.81 ATOM 222 N HIS A 430 36.762 14.632 18.454 1.00 35.55 ATOM 223 CA HIS A 430 37.258 14.932 19.792 1.00 49.58 ATOM 224 C HIS A 430 37.437 13.686 20.653 1.00 36.54 ATOM 225 O HIS A 430 37.508 13.798 21.881 1.00 60.15 ATOM 226 CB HIS A 430 36.316 15.914 20.494 1.00 30.59 ATOM 227 CG HIS A 430 36.036 17.161 19.711 1.00 42.17 ATOM 228 ND1 HIS A 430 37.032 18.000 19.257 1.00 29.31 ATOM 229 CD2 HIS A 430 34.866 17.728 19.328 1.00 32.49 ATOM 230 CE1 HIS A 430 36.489 19.024 18.623 1.00 33.04 ATOM 231 NE2 HIS A 430 35.176 18.883 18.650 1.00 32.91 ATOM 232 N THR A 431 37.521 12.506 20.043 1.00 48.27 ATOM 233 CA THR A 431 37.541 11.257 20.789 1.00 43.56 ATOM 234 C THR A 431 38.604 10.330 20.220 1.00 42.56 ATOM 235 O THR A 431 38.775 10.243 19.001 1.00 54.11 ATOM 236 CB THR A 431 36.167 10.571 20.743 1.00 44.06 ATOM 237 OG1 THR A 431 35.147 11.526 21.059 1.00 46.23 ATOM 238 CG2 THR A 431 36.102 9.423 21.738 1.00 38.52 ATOM 239 N GLU A 432 39.316 9.641 21.106 1.00 51.04 ATOM 240 CA GLU A 432 40.337 8.681 20.715 1.00 46.02 ATOM 241 C GLU A 432 39.819 7.254 20.851 1.00 59.01 ATOM 242 O GLU A 432 38.843 6.983 21.555 1.00 65.66 ATOM 243 CB GLU A 432 41.603 8.853 21.559 1.00 37.30 ATOM 244 CG GLU A 432 42.226 10.237 21.479 1.00 44.05 ATOM 245 CD GLU A 432 43.623 10.281 22.071 1.00 57.24 ATOM 246 OE1 GLU A 432 44.327 11.289 21.852 1.00 48.90 ATOM 247 OE2 GLU A 432 44.021 9.306 22.746 1.00 50.88 ATOM 248 ZN ZN A 603 33.478 20.012 18.343 1.00 41.02 TER