HEADER transcription/dna 30-JAN-17 5UND TITLE Crystal Structure of CTCF(ZnF 4-10) With 28-mer DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.55 ANGSTORMS DBREF 5UND B 348 547 UNP P49711 CTCF_HUMAN 348 547 SEQRES 1 B 28 GLY GLU ARG PRO PHE GLN CYS SER LEU CYS SER TYR ALA SEQRES 2 B 28 SER ARG ASP THR TYR LYS LEU LYS ARG HIS MET ARG THR SEQRES 3 B 28 HIS SER ATOM 1 N GLY B 375 -4.182 5.699 48.588 1.00245.83 ATOM 2 CA GLY B 375 -5.029 6.802 48.996 1.00243.71 ATOM 3 C GLY B 375 -4.427 8.168 48.773 1.00235.28 ATOM 4 O GLY B 375 -4.886 9.143 49.373 1.00241.01 ATOM 5 N GLU B 376 -3.407 8.267 47.925 1.00209.07 ATOM 6 CA GLU B 376 -2.762 9.547 47.668 1.00187.10 ATOM 7 C GLU B 376 -3.669 10.437 46.828 1.00186.22 ATOM 8 O GLU B 376 -4.203 10.007 45.801 1.00171.56 ATOM 9 CB GLU B 376 -1.426 9.333 46.959 1.00168.70 ATOM 10 CG GLU B 376 -0.665 10.615 46.670 1.00155.60 ATOM 11 CD GLU B 376 0.527 10.391 45.762 1.00149.75 ATOM 12 OE1 GLU B 376 1.047 11.381 45.206 1.00147.02 ATOM 13 OE2 GLU B 376 0.941 9.224 45.600 1.00151.22 ATOM 14 N ARG B 377 -3.839 11.686 47.266 1.00198.02 ATOM 15 CA ARG B 377 -4.662 12.678 46.577 1.00194.13 ATOM 16 C ARG B 377 -3.774 13.863 46.218 1.00195.51 ATOM 17 O ARG B 377 -3.717 14.859 46.957 1.00203.64 ATOM 18 CB ARG B 377 -5.848 13.107 47.440 1.00188.24 ATOM 19 CG ARG B 377 -6.753 11.956 47.858 1.00180.76 ATOM 20 CD ARG B 377 -7.865 12.429 48.780 1.00175.61 ATOM 21 NE ARG B 377 -8.757 11.340 49.170 1.00170.09 ATOM 22 CZ ARG B 377 -9.852 10.994 48.500 1.00166.17 ATOM 23 NH1 ARG B 377 -10.195 11.651 47.401 1.00163.31 ATOM 24 NH2 ARG B 377 -10.605 9.990 48.929 1.00162.78 ATOM 25 N PRO B 378 -3.064 13.795 45.091 1.00188.94 ATOM 26 CA PRO B 378 -2.125 14.861 44.721 1.00191.17 ATOM 27 C PRO B 378 -2.771 16.112 44.146 1.00194.70 ATOM 28 O PRO B 378 -2.053 16.954 43.600 1.00199.60 ATOM 29 CB PRO B 378 -1.238 14.184 43.659 1.00187.56 ATOM 30 CG PRO B 378 -1.576 12.717 43.706 1.00183.97 ATOM 31 CD PRO B 378 -2.987 12.652 44.170 1.00179.97 ATOM 32 N PHE B 379 -4.090 16.267 44.243 1.00187.91 ATOM 33 CA PHE B 379 -4.791 17.409 43.658 1.00176.89 ATOM 34 C PHE B 379 -5.762 17.962 44.697 1.00160.55 ATOM 35 O PHE B 379 -6.840 17.400 44.912 1.00153.89 ATOM 36 CB PHE B 379 -5.508 17.007 42.374 1.00179.03 ATOM 37 CG PHE B 379 -4.630 16.276 41.399 1.00180.32 ATOM 38 CD1 PHE B 379 -3.743 16.968 40.592 1.00181.72 ATOM 39 CD2 PHE B 379 -4.687 14.896 41.292 1.00178.04 ATOM 40 CE1 PHE B 379 -2.931 16.299 39.696 1.00178.04 ATOM 41 CE2 PHE B 379 -3.879 14.220 40.397 1.00173.92 ATOM 42 CZ PHE B 379 -2.999 14.923 39.599 1.00174.25 ATOM 43 N GLN B 380 -5.378 19.062 45.334 1.00147.60 ATOM 44 CA GLN B 380 -6.186 19.686 46.369 1.00131.52 ATOM 45 C GLN B 380 -7.112 20.734 45.762 1.00123.81 ATOM 46 O GLN B 380 -6.849 21.289 44.693 1.00119.88 ATOM 47 CB GLN B 380 -5.295 20.328 47.432 1.00124.93 ATOM 48 CG GLN B 380 -3.976 19.604 47.654 1.00137.63 ATOM 49 CD GLN B 380 -4.162 18.176 48.125 1.00142.10 ATOM 50 OE1 GLN B 380 -5.032 17.889 48.946 1.00145.23 ATOM 51 NE2 GLN B 380 -3.343 17.270 47.603 1.00142.03 ATOM 52 N CYS B 381 -8.209 21.003 46.465 1.00132.95 ATOM 53 CA CYS B 381 -9.195 21.982 46.026 1.00138.95 ATOM 54 C CYS B 381 -8.887 23.326 46.674 1.00128.33 ATOM 55 O CYS B 381 -8.854 23.435 47.904 1.00118.77 ATOM 56 CB CYS B 381 -10.610 21.522 46.376 1.00134.05 ATOM 57 SG CYS B 381 -11.932 22.554 45.701 1.00111.68 ATOM 58 N SER B 382 -8.667 24.348 45.846 1.00154.16 ATOM 59 CA SER B 382 -8.320 25.675 46.341 1.00171.05 ATOM 60 C SER B 382 -9.499 26.411 46.964 1.00168.43 ATOM 61 O SER B 382 -9.331 27.565 47.375 1.00179.58 ATOM 62 CB SER B 382 -7.728 26.515 45.208 1.00188.59 ATOM 63 OG SER B 382 -7.388 27.814 45.658 1.00202.07 ATOM 64 N LEU B 383 -10.675 25.789 47.048 1.00145.21 ATOM 65 CA LEU B 383 -11.856 26.426 47.613 1.00136.85 ATOM 66 C LEU B 383 -12.266 25.795 48.940 1.00133.13 ATOM 67 O LEU B 383 -12.369 26.494 49.951 1.00119.63 ATOM 68 CB LEU B 383 -13.018 26.364 46.611 1.00118.71 ATOM 69 N CYS B 384 -12.506 24.490 48.959 1.00157.95 ATOM 70 CA CYS B 384 -12.909 23.779 50.164 1.00161.61 ATOM 71 C CYS B 384 -11.826 22.768 50.541 1.00162.53 ATOM 72 O CYS B 384 -10.713 22.788 50.009 1.00167.35 ATOM 73 CB CYS B 384 -14.270 23.107 49.966 1.00167.75 ATOM 74 SG CYS B 384 -14.316 21.859 48.660 1.00161.98 ATOM 75 N SER B 385 -12.167 21.873 51.469 1.00152.97 ATOM 76 CA SER B 385 -11.234 20.884 51.989 1.00147.86 ATOM 77 C SER B 385 -11.193 19.608 51.153 1.00145.59 ATOM 78 O SER B 385 -10.733 18.572 51.645 1.00139.79 ATOM 79 CB SER B 385 -11.586 20.546 53.440 1.00143.79 ATOM 80 OG SER B 385 -12.905 20.038 53.540 1.00136.62 ATOM 81 N TYR B 386 -11.656 19.659 49.908 1.00145.37 ATOM 82 CA TYR B 386 -11.663 18.475 49.062 1.00142.20 ATOM 83 C TYR B 386 -10.283 18.230 48.462 1.00137.14 ATOM 84 O TYR B 386 -9.516 19.162 48.203 1.00146.99 ATOM 85 CB TYR B 386 -12.701 18.614 47.948 1.00145.39 ATOM 86 CG TYR B 386 -12.718 17.447 46.984 1.00136.41 ATOM 87 CD1 TYR B 386 -13.348 16.255 47.317 1.00129.19 ATOM 88 CD2 TYR B 386 -12.098 17.537 45.745 1.00132.14 ATOM 89 CE1 TYR B 386 -13.361 15.186 46.442 1.00125.61 ATOM 90 CE2 TYR B 386 -12.106 16.474 44.864 1.00125.23 ATOM 91 CZ TYR B 386 -12.738 15.301 45.216 1.00122.09 ATOM 92 OH TYR B 386 -12.748 14.241 44.340 1.00117.79 ATOM 93 N ALA B 387 -9.971 16.954 48.247 1.00108.76 ATOM 94 CA ALA B 387 -8.713 16.541 47.641 1.00109.25 ATOM 95 C ALA B 387 -8.991 15.402 46.675 1.00108.54 ATOM 96 O ALA B 387 -9.695 14.450 47.024 1.00109.19 ATOM 97 CB ALA B 387 -7.697 16.107 48.703 1.00113.35 ATOM 98 N SER B 388 -8.438 15.498 45.470 1.00128.06 ATOM 99 CA SER B 388 -8.730 14.562 44.396 1.00141.27 ATOM 100 C SER B 388 -7.511 13.716 44.054 1.00150.15 ATOM 101 O SER B 388 -6.367 14.162 44.177 1.00152.60 ATOM 102 CB SER B 388 -9.201 15.300 43.140 1.00139.97 ATOM 103 OG SER B 388 -9.089 14.469 41.999 1.00138.72 ATOM 104 N ARG B 389 -7.774 12.486 43.615 1.00160.79 ATOM 105 CA ARG B 389 -6.738 11.596 43.112 1.00168.27 ATOM 106 C ARG B 389 -6.484 11.769 41.621 1.00171.82 ATOM 107 O ARG B 389 -5.485 11.248 41.113 1.00172.06 ATOM 108 CB ARG B 389 -7.108 10.134 43.390 1.00174.72 ATOM 109 CG ARG B 389 -7.320 9.804 44.858 1.00182.70 ATOM 110 CD ARG B 389 -7.573 8.316 45.051 1.00186.93 ATOM 111 NE ARG B 389 -7.717 7.959 46.459 1.00189.20 ATOM 112 CZ ARG B 389 -8.881 7.885 47.096 1.00187.67 ATOM 113 NH1 ARG B 389 -10.010 8.144 46.451 1.00185.65 ATOM 114 NH2 ARG B 389 -8.916 7.551 48.379 1.00185.82 ATOM 115 N ASP B 390 -7.359 12.480 40.914 1.00168.71 ATOM 116 CA ASP B 390 -7.248 12.665 39.476 1.00179.41 ATOM 117 C ASP B 390 -7.459 14.135 39.139 1.00218.85 ATOM 118 O ASP B 390 -8.058 14.891 39.909 1.00211.50 ATOM 119 CB ASP B 390 -8.266 11.790 38.726 1.00167.11 ATOM 120 CG ASP B 390 -8.027 11.763 37.229 1.00161.97 ATOM 121 OD1 ASP B 390 -6.981 12.278 36.780 1.00165.22 ATOM 122 OD2 ASP B 390 -8.889 11.228 36.499 1.00158.67 ATOM 123 N THR B 391 -6.951 14.535 37.971 1.00220.73 ATOM 124 CA THR B 391 -7.105 15.919 37.531 1.00231.63 ATOM 125 C THR B 391 -8.555 16.224 37.178 1.00222.88 ATOM 126 O THR B 391 -9.095 17.267 37.568 1.00212.98 ATOM 127 CB THR B 391 -6.195 16.197 36.334 1.00246.29 ATOM 128 OG1 THR B 391 -6.615 15.402 35.218 1.00248.79 ATOM 129 CG2 THR B 391 -4.752 15.863 36.669 1.00252.25 ATOM 130 N TYR B 392 -9.203 15.323 36.435 1.00221.15 ATOM 131 CA TYR B 392 -10.578 15.566 36.012 1.00195.10 ATOM 132 C TYR B 392 -11.547 15.512 37.186 1.00176.99 ATOM 133 O TYR B 392 -12.582 16.187 37.162 1.00176.97 ATOM 134 CB TYR B 392 -10.982 14.555 34.938 1.00187.00 ATOM 135 CG TYR B 392 -12.227 14.938 34.170 1.00174.13 ATOM 136 CD1 TYR B 392 -12.155 15.789 33.074 1.00166.27 ATOM 137 CD2 TYR B 392 -13.473 14.446 34.536 1.00163.51 ATOM 138 CE1 TYR B 392 -13.289 16.141 32.366 1.00159.18 ATOM 139 CE2 TYR B 392 -14.614 14.793 33.835 1.00154.60 ATOM 140 CZ TYR B 392 -14.516 15.640 32.751 1.00151.36 ATOM 141 OH TYR B 392 -15.648 15.987 32.050 1.00146.06 ATOM 142 N LYS B 393 -11.234 14.721 38.216 1.00147.59 ATOM 143 CA LYS B 393 -12.082 14.689 39.404 1.00128.37 ATOM 144 C LYS B 393 -12.058 16.028 40.131 1.00129.01 ATOM 145 O LYS B 393 -13.080 16.467 40.671 1.00115.92 ATOM 146 CB LYS B 393 -11.639 13.565 40.340 1.00113.80 ATOM 147 CG LYS B 393 -11.761 12.167 39.757 1.00108.26 ATOM 148 CD LYS B 393 -13.211 11.751 39.613 1.00102.60 ATOM 149 CE LYS B 393 -13.332 10.283 39.235 1.00 98.53 ATOM 150 NZ LYS B 393 -12.701 9.988 37.919 1.00 96.48 ATOM 151 N LEU B 394 -10.898 16.690 40.158 1.00152.03 ATOM 152 CA LEU B 394 -10.821 18.018 40.756 1.00157.18 ATOM 153 C LEU B 394 -11.524 19.051 39.887 1.00146.37 ATOM 154 O LEU B 394 -12.207 19.944 40.403 1.00141.26 ATOM 155 CB LEU B 394 -9.360 18.408 40.983 1.00165.39 ATOM 156 CG LEU B 394 -9.114 19.788 41.593 1.00172.11 ATOM 157 CD1 LEU B 394 -9.779 19.899 42.956 1.00168.90 ATOM 158 CD2 LEU B 394 -7.624 20.073 41.694 1.00180.38 ATOM 159 N LYS B 395 -11.367 18.947 38.565 1.00145.64 ATOM 160 CA LYS B 395 -12.081 19.838 37.657 1.00139.18 ATOM 161 C LYS B 395 -13.588 19.672 37.798 1.00128.94 ATOM 162 O LYS B 395 -14.332 20.660 37.820 1.00121.90 ATOM 163 CB LYS B 395 -11.640 19.571 36.217 1.00136.50 ATOM 164 CG LYS B 395 -12.428 20.327 35.163 1.00131.81 ATOM 165 CD LYS B 395 -12.004 19.904 33.766 1.00134.15 ATOM 166 CE LYS B 395 -12.839 20.590 32.698 1.00131.37 ATOM 167 NZ LYS B 395 -12.447 20.152 31.330 1.00132.00 ATOM 168 N ARG B 396 -14.054 18.426 37.901 1.00113.23 ATOM 169 CA ARG B 396 -15.476 18.170 38.102 1.00 92.95 ATOM 170 C ARG B 396 -15.952 18.687 39.455 1.00101.62 ATOM 171 O ARG B 396 -17.109 19.103 39.587 1.00 95.57 ATOM 172 CB ARG B 396 -15.750 16.672 37.971 1.00 84.46 ATOM 173 CG ARG B 396 -17.214 16.282 38.013 1.00 84.26 ATOM 174 CD ARG B 396 -17.374 14.772 37.931 1.00 82.57 ATOM 175 NE ARG B 396 -16.844 14.101 39.115 1.00 86.07 ATOM 176 CZ ARG B 396 -16.839 12.783 39.288 1.00 81.19 ATOM 177 NH1 ARG B 396 -17.334 11.986 38.350 1.00 79.55 ATOM 178 NH2 ARG B 396 -16.340 12.259 40.398 1.00 82.59 ATOM 179 N HIS B 397 -15.077 18.672 40.465 1.00111.18 ATOM 180 CA HIS B 397 -15.452 19.169 41.785 1.00 96.84 ATOM 181 C HIS B 397 -15.634 20.681 41.792 1.00 94.13 ATOM 182 O HIS B 397 -16.481 21.196 42.529 1.00 87.62 ATOM 183 CB HIS B 397 -14.400 18.758 42.817 1.00111.71 ATOM 184 CG HIS B 397 -14.486 19.517 44.105 1.00127.31 ATOM 185 ND1 HIS B 397 -15.561 19.411 44.962 1.00129.15 ATOM 186 CD2 HIS B 397 -13.632 20.397 44.679 1.00130.49 ATOM 187 CE1 HIS B 397 -15.364 20.192 46.010 1.00131.94 ATOM 188 NE2 HIS B 397 -14.202 20.802 45.863 1.00141.60 ATOM 189 N MET B 398 -14.855 21.405 40.982 1.00119.45 ATOM 190 CA MET B 398 -14.946 22.861 40.972 1.00128.14 ATOM 191 C MET B 398 -16.311 23.353 40.513 1.00117.47 ATOM 192 O MET B 398 -16.703 24.472 40.862 1.00113.90 ATOM 193 CB MET B 398 -13.852 23.455 40.083 1.00142.55 ATOM 194 CG MET B 398 -12.439 23.134 40.542 1.00151.00 ATOM 195 SD MET B 398 -12.175 23.485 42.292 1.00155.43 ATOM 196 CE MET B 398 -12.458 25.253 42.340 1.00160.27 ATOM 197 N ARG B 399 -17.044 22.543 39.744 1.00110.55 ATOM 198 CA ARG B 399 -18.388 22.925 39.329 1.00101.99 ATOM 199 C ARG B 399 -19.329 23.089 40.515 1.00 93.89 ATOM 200 O ARG B 399 -20.339 23.793 40.399 1.00 85.96 ATOM 201 CB ARG B 399 -18.947 21.889 38.351 1.00 99.47 ATOM 202 CG ARG B 399 -18.084 21.676 37.115 1.00 91.15 ATOM 203 CD ARG B 399 -18.468 20.404 36.372 1.00 71.50 ATOM 204 NE ARG B 399 -17.506 20.079 35.321 1.00 73.19 ATOM 205 CZ ARG B 399 -17.462 18.916 34.677 1.00 77.99 ATOM 206 NH1 ARG B 399 -18.325 17.955 34.976 1.00 71.91 ATOM 207 NH2 ARG B 399 -16.551 18.712 33.735 1.00 77.58 ATOM 208 N THR B 400 -19.018 22.461 41.652 1.00101.46 ATOM 209 CA THR B 400 -19.854 22.614 42.839 1.00109.31 ATOM 210 C THR B 400 -19.832 24.049 43.351 1.00100.85 ATOM 211 O THR B 400 -20.861 24.574 43.791 1.00 99.38 ATOM 212 CB THR B 400 -19.393 21.655 43.937 1.00111.74 ATOM 213 OG1 THR B 400 -19.381 20.314 43.431 1.00115.98 ATOM 214 CG2 THR B 400 -20.327 21.730 45.136 1.00112.21 ATOM 215 N HIS B 401 -18.672 24.702 43.302 1.00 94.54 ATOM 216 CA HIS B 401 -18.579 26.072 43.794 1.00105.14 ATOM 217 C HIS B 401 -18.981 27.075 42.718 1.00 97.71 ATOM 218 O HIS B 401 -19.761 27.998 42.980 1.00 91.87 ATOM 219 CB HIS B 401 -17.163 26.357 44.303 1.00119.66 ATOM 220 CG HIS B 401 -16.715 25.429 45.390 1.00134.41 ATOM 221 ND1 HIS B 401 -17.249 25.457 46.661 1.00137.16 ATOM 222 CD2 HIS B 401 -15.782 24.448 45.396 1.00138.06 ATOM 223 CE1 HIS B 401 -16.665 24.531 47.402 1.00137.66 ATOM 224 NE2 HIS B 401 -15.770 23.906 46.658 1.00147.44 ATOM 225 N SER B 402 -18.464 26.906 41.497 1.00 93.54 ATOM 226 CA SER B 402 -18.752 27.854 40.427 1.00 89.93 ATOM 227 C SER B 402 -20.188 27.759 39.928 1.00 83.45 ATOM 228 O SER B 402 -20.685 28.718 39.327 1.00 83.44 ATOM 229 CB SER B 402 -17.789 27.640 39.257 1.00 89.74 ATOM 230 OG SER B 402 -18.011 26.390 38.628 1.00 80.92 ATOM 231 ZN ZN B 602 -14.110 22.723 46.542 1.00137.54 TER