HEADER transcription/dna 30-JAN-17 5UND TITLE Crystal Structure of CTCF(ZnF 4-10) With 28-mer DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.55 ANGSTORMS DBREF 5UND B 348 547 UNP P49711 CTCF_HUMAN 348 547 SEQRES 1 B 32 GLY GLU LYS PRO TYR GLU CYS TYR ILE CYS HIS ALA ARG SEQRES 2 B 32 PHE THR GLN SER GLY THR MET LYS MET HIS ILE LEU GLN SEQRES 3 B 32 LYS HIS THR GLU ASN VAL ATOM 1 N GLY B 403 -20.867 26.638 40.164 1.00 75.27 ATOM 2 CA GLY B 403 -22.215 26.477 39.658 1.00 64.20 ATOM 3 C GLY B 403 -22.299 26.277 38.164 1.00 72.31 ATOM 4 O GLY B 403 -23.333 26.579 37.562 1.00 63.68 ATOM 5 N GLU B 404 -21.233 25.778 37.545 1.00 72.98 ATOM 6 CA GLU B 404 -21.215 25.564 36.107 1.00 74.66 ATOM 7 C GLU B 404 -21.855 24.228 35.758 1.00 78.13 ATOM 8 O GLU B 404 -21.609 23.212 36.415 1.00 86.40 ATOM 9 CB GLU B 404 -19.779 25.607 35.581 1.00 71.53 ATOM 10 CG GLU B 404 -19.653 25.358 34.087 1.00 75.80 ATOM 11 CD GLU B 404 -18.210 25.248 33.634 1.00 92.60 ATOM 12 OE1 GLU B 404 -17.309 25.341 34.494 1.00 98.01 ATOM 13 OE2 GLU B 404 -17.977 25.068 32.420 1.00 96.40 ATOM 14 N LYS B 405 -22.689 24.236 34.718 1.00 75.13 ATOM 15 CA LYS B 405 -23.308 23.028 34.176 1.00 69.90 ATOM 16 C LYS B 405 -22.912 22.934 32.706 1.00 72.69 ATOM 17 O LYS B 405 -23.596 23.483 31.831 1.00 64.43 ATOM 18 CB LYS B 405 -24.824 23.053 34.358 1.00 61.49 ATOM 19 CG LYS B 405 -25.250 23.173 35.813 1.00 61.23 ATOM 20 CD LYS B 405 -26.757 23.196 35.969 1.00 62.72 ATOM 21 CE LYS B 405 -27.150 23.776 37.318 1.00 62.02 ATOM 22 NZ LYS B 405 -26.462 23.077 38.435 1.00 76.69 ATOM 23 N PRO B 406 -21.802 22.256 32.398 1.00 67.12 ATOM 24 CA PRO B 406 -21.300 22.255 31.014 1.00 52.41 ATOM 25 C PRO B 406 -22.079 21.373 30.057 1.00 55.06 ATOM 26 O PRO B 406 -21.911 21.523 28.839 1.00 73.66 ATOM 27 CB PRO B 406 -19.858 21.736 31.162 1.00 60.07 ATOM 28 CG PRO B 406 -19.553 21.794 32.636 1.00 64.62 ATOM 29 CD PRO B 406 -20.861 21.616 33.328 1.00 66.64 ATOM 30 N TYR B 407 -22.912 20.463 30.549 1.00 52.71 ATOM 31 CA TYR B 407 -23.582 19.484 29.706 1.00 45.51 ATOM 32 C TYR B 407 -25.024 19.907 29.459 1.00 47.62 ATOM 33 O TYR B 407 -25.772 20.168 30.406 1.00 46.52 ATOM 34 CB TYR B 407 -23.513 18.098 30.346 1.00 38.33 ATOM 35 CG TYR B 407 -22.086 17.641 30.572 1.00 71.74 ATOM 36 CD1 TYR B 407 -21.388 16.962 29.582 1.00 78.10 ATOM 37 CD2 TYR B 407 -21.429 17.910 31.768 1.00 73.51 ATOM 38 CE1 TYR B 407 -20.081 16.552 29.780 1.00 87.60 ATOM 39 CE2 TYR B 407 -20.123 17.503 31.976 1.00 83.49 ATOM 40 CZ TYR B 407 -19.454 16.824 30.978 1.00 92.74 ATOM 41 OH TYR B 407 -18.154 16.414 31.175 1.00 99.85 ATOM 42 N GLU B 408 -25.406 19.978 28.185 1.00 58.27 ATOM 43 CA GLU B 408 -26.696 20.511 27.766 1.00 43.17 ATOM 44 C GLU B 408 -27.473 19.451 27.001 1.00 45.65 ATOM 45 O GLU B 408 -26.948 18.853 26.056 1.00 55.48 ATOM 46 CB GLU B 408 -26.506 21.758 26.896 1.00 38.52 ATOM 47 CG GLU B 408 -27.773 22.262 26.230 1.00 42.68 ATOM 48 CD GLU B 408 -27.522 23.468 25.336 1.00 58.45 ATOM 49 OE1 GLU B 408 -26.356 23.901 25.223 1.00 64.31 ATOM 50 OE2 GLU B 408 -28.493 23.988 24.747 1.00 64.13 ATOM 51 N CYS B 409 -28.719 19.221 27.408 1.00 41.60 ATOM 52 CA CYS B 409 -29.601 18.333 26.660 1.00 33.04 ATOM 53 C CYS B 409 -29.911 18.963 25.308 1.00 51.80 ATOM 54 O CYS B 409 -30.486 20.053 25.241 1.00 51.93 ATOM 55 CB CYS B 409 -30.886 18.072 27.441 1.00 49.38 ATOM 56 SG CYS B 409 -32.111 17.060 26.567 1.00 43.64 ATOM 57 N TYR B 410 -29.529 18.282 24.227 1.00 39.50 ATOM 58 CA TYR B 410 -29.672 18.872 22.903 1.00 43.91 ATOM 59 C TYR B 410 -31.122 18.977 22.452 1.00 42.61 ATOM 60 O TYR B 410 -31.386 19.613 21.427 1.00 43.80 ATOM 61 CB TYR B 410 -28.858 18.071 21.881 1.00 28.83 ATOM 62 CG TYR B 410 -29.479 16.761 21.458 1.00 47.79 ATOM 63 CD1 TYR B 410 -29.383 15.627 22.258 1.00 34.49 ATOM 64 CD2 TYR B 410 -30.142 16.652 20.242 1.00 41.00 ATOM 65 CE1 TYR B 410 -29.945 14.424 21.861 1.00 41.51 ATOM 66 CE2 TYR B 410 -30.704 15.458 19.837 1.00 27.54 ATOM 67 CZ TYR B 410 -30.606 14.347 20.648 1.00 43.95 ATOM 68 OH TYR B 410 -31.173 13.160 20.237 1.00 49.74 ATOM 69 N ILE B 411 -32.060 18.401 23.195 1.00 35.04 ATOM 70 CA ILE B 411 -33.473 18.418 22.830 1.00 31.11 ATOM 71 C ILE B 411 -34.224 19.550 23.523 1.00 34.39 ATOM 72 O ILE B 411 -34.929 20.319 22.869 1.00 42.48 ATOM 73 CB ILE B 411 -34.117 17.045 23.125 1.00 43.40 ATOM 74 CG1 ILE B 411 -33.384 15.947 22.350 1.00 45.90 ATOM 75 CG2 ILE B 411 -35.591 17.059 22.755 1.00 46.51 ATOM 76 CD1 ILE B 411 -33.983 14.566 22.511 1.00 36.01 ATOM 77 N CYS B 412 -34.090 19.674 24.849 1.00 35.98 ATOM 78 CA CYS B 412 -34.806 20.703 25.602 1.00 37.01 ATOM 79 C CYS B 412 -33.901 21.768 26.210 1.00 28.80 ATOM 80 O CYS B 412 -34.416 22.711 26.821 1.00 41.85 ATOM 81 CB CYS B 412 -35.648 20.072 26.721 1.00 25.22 ATOM 82 SG CYS B 412 -34.673 19.438 28.114 1.00 36.24 ATOM 83 N HIS B 413 -32.578 21.632 26.087 1.00 40.71 ATOM 84 CA HIS B 413 -31.615 22.658 26.488 1.00 46.73 ATOM 85 C HIS B 413 -31.531 22.828 28.005 1.00 46.74 ATOM 86 O HIS B 413 -31.134 23.888 28.494 1.00 49.93 ATOM 87 CB HIS B 413 -31.917 23.998 25.810 1.00 44.49 ATOM 88 CG HIS B 413 -32.112 23.888 24.331 1.00 40.96 ATOM 89 ND1 HIS B 413 -31.130 23.418 23.487 1.00 37.92 ATOM 90 CD2 HIS B 413 -33.179 24.170 23.547 1.00 46.90 ATOM 91 CE1 HIS B 413 -31.580 23.423 22.245 1.00 48.30 ATOM 92 NE2 HIS B 413 -32.821 23.876 22.254 1.00 55.52 ATOM 93 N ALA B 414 -31.887 21.795 28.763 1.00 30.48 ATOM 94 CA ALA B 414 -31.618 21.786 30.193 1.00 34.17 ATOM 95 C ALA B 414 -30.150 21.460 30.439 1.00 49.92 ATOM 96 O ALA B 414 -29.535 20.684 29.703 1.00 34.94 ATOM 97 CB ALA B 414 -32.510 20.769 30.907 1.00 27.48 ATOM 98 N ARG B 415 -29.584 22.060 31.485 1.00 35.43 ATOM 99 CA ARG B 415 -28.157 21.946 31.749 1.00 42.13 ATOM 100 C ARG B 415 -27.889 21.069 32.968 1.00 46.76 ATOM 101 O ARG B 415 -28.712 20.973 33.883 1.00 49.36 ATOM 102 CB ARG B 415 -27.529 23.326 31.937 1.00 42.36 ATOM 103 CG ARG B 415 -27.854 24.288 30.799 1.00 28.10 ATOM 104 CD ARG B 415 -26.897 25.471 30.754 1.00 46.83 ATOM 105 NE ARG B 415 -25.519 25.053 30.507 1.00 49.09 ATOM 106 CZ ARG B 415 -25.010 24.829 29.299 1.00 60.48 ATOM 107 NH1 ARG B 415 -25.766 24.975 28.219 1.00 47.54 ATOM 108 NH2 ARG B 415 -23.746 24.451 29.171 1.00 70.49 ATOM 109 N PHE B 416 -26.722 20.423 32.964 1.00 42.72 ATOM 110 CA PHE B 416 -26.363 19.439 33.976 1.00 46.38 ATOM 111 C PHE B 416 -24.877 19.548 34.293 1.00 53.59 ATOM 112 O PHE B 416 -24.078 20.007 33.474 1.00 57.68 ATOM 113 CB PHE B 416 -26.697 18.011 33.516 1.00 50.45 ATOM 114 CG PHE B 416 -28.111 17.845 33.043 1.00 63.83 ATOM 115 CD1 PHE B 416 -29.118 17.509 33.932 1.00 49.19 ATOM 116 CD2 PHE B 416 -28.435 18.033 31.707 1.00 48.79 ATOM 117 CE1 PHE B 416 -30.421 17.360 33.501 1.00 48.95 ATOM 118 CE2 PHE B 416 -29.735 17.890 31.271 1.00 41.68 ATOM 119 CZ PHE B 416 -30.729 17.554 32.170 1.00 53.89 ATOM 120 N THR B 417 -24.513 19.103 35.500 1.00 62.95 ATOM 121 CA THR B 417 -23.135 19.203 35.969 1.00 61.22 ATOM 122 C THR B 417 -22.245 18.074 35.465 1.00 53.07 ATOM 123 O THR B 417 -21.023 18.246 35.417 1.00 69.09 ATOM 124 CB THR B 417 -23.097 19.219 37.502 1.00 63.18 ATOM 125 OG1 THR B 417 -23.559 17.959 38.009 1.00 67.78 ATOM 126 CG2 THR B 417 -23.980 20.327 38.057 1.00 49.31 ATOM 127 N GLN B 418 -22.818 16.931 35.095 1.00 51.55 ATOM 128 CA GLN B 418 -22.053 15.786 34.624 1.00 52.24 ATOM 129 C GLN B 418 -22.716 15.202 33.382 1.00 52.12 ATOM 130 O GLN B 418 -23.902 15.422 33.122 1.00 60.53 ATOM 131 CB GLN B 418 -21.925 14.701 35.708 1.00 55.63 ATOM 132 CG GLN B 418 -21.214 15.158 36.977 1.00 53.29 ATOM 133 CD GLN B 418 -21.034 14.036 37.985 1.00 60.45 ATOM 134 OE1 GLN B 418 -21.362 12.881 37.713 1.00 56.54 ATOM 135 NE2 GLN B 418 -20.511 14.374 39.159 1.00 69.18 ATOM 136 N SER B 419 -21.929 14.445 32.611 1.00 52.18 ATOM 137 CA SER B 419 -22.451 13.860 31.380 1.00 63.93 ATOM 138 C SER B 419 -23.431 12.731 31.674 1.00 49.41 ATOM 139 O SER B 419 -24.455 12.598 30.992 1.00 58.74 ATOM 140 CB SER B 419 -21.305 13.356 30.504 1.00 52.42 ATOM 141 OG SER B 419 -20.629 12.273 31.120 1.00 83.51 ATOM 142 N GLY B 420 -23.131 11.900 32.675 1.00 48.06 ATOM 143 CA GLY B 420 -24.040 10.822 33.026 1.00 40.98 ATOM 144 C GLY B 420 -25.383 11.326 33.512 1.00 45.27 ATOM 145 O GLY B 420 -26.417 10.696 33.266 1.00 44.84 ATOM 146 N THR B 421 -25.388 12.463 34.208 1.00 58.41 ATOM 147 CA THR B 421 -26.645 13.097 34.582 1.00 42.20 ATOM 148 C THR B 421 -27.444 13.489 33.346 1.00 43.32 ATOM 149 O THR B 421 -28.661 13.270 33.286 1.00 47.81 ATOM 150 CB THR B 421 -26.372 14.323 35.452 1.00 47.60 ATOM 151 OG1 THR B 421 -25.608 13.936 36.600 1.00 65.36 ATOM 152 CG2 THR B 421 -27.675 14.944 35.905 1.00 39.83 ATOM 153 N MET B 422 -26.773 14.064 32.346 1.00 43.47 ATOM 154 CA MET B 422 -27.460 14.434 31.114 1.00 55.49 ATOM 155 C MET B 422 -27.948 13.201 30.366 1.00 53.85 ATOM 156 O MET B 422 -29.061 13.192 29.826 1.00 39.44 ATOM 157 CB MET B 422 -26.538 15.266 30.227 1.00 38.96 ATOM 158 CG MET B 422 -27.168 15.648 28.900 1.00 50.01 ATOM 159 SD MET B 422 -25.990 16.443 27.803 1.00 56.66 ATOM 160 CE MET B 422 -24.830 15.106 27.534 1.00 58.24 ATOM 161 N LYS B 423 -27.127 12.150 30.325 1.00 38.88 ATOM 162 CA LYS B 423 -27.526 10.919 29.652 1.00 48.99 ATOM 163 C LYS B 423 -28.781 10.330 30.288 1.00 50.04 ATOM 164 O LYS B 423 -29.729 9.954 29.587 1.00 50.42 ATOM 165 CB LYS B 423 -26.373 9.914 29.686 1.00 68.10 ATOM 166 CG LYS B 423 -26.580 8.687 28.814 1.00 68.18 ATOM 167 CD LYS B 423 -25.382 7.754 28.884 1.00 84.93 ATOM 168 CE LYS B 423 -25.601 6.518 28.027 1.00 99.90 ATOM 169 NZ LYS B 423 -24.439 5.586 28.075 1.00110.67 ATOM 170 N MET B 424 -28.808 10.257 31.623 1.00 46.37 ATOM 171 CA MET B 424 -29.972 9.705 32.313 1.00 32.13 ATOM 172 C MET B 424 -31.215 10.550 32.066 1.00 49.33 ATOM 173 O MET B 424 -32.319 10.013 31.907 1.00 29.24 ATOM 174 CB MET B 424 -29.687 9.592 33.811 1.00 45.25 ATOM 175 CG MET B 424 -30.827 8.999 34.615 1.00 46.35 ATOM 176 SD MET B 424 -31.296 7.358 34.039 1.00 55.73 ATOM 177 CE MET B 424 -29.767 6.462 34.301 1.00 38.83 ATOM 178 N HIS B 425 -31.056 11.876 32.035 1.00 39.79 ATOM 179 CA HIS B 425 -32.171 12.758 31.698 1.00 30.32 ATOM 180 C HIS B 425 -32.753 12.403 30.335 1.00 44.88 ATOM 181 O HIS B 425 -33.966 12.209 30.193 1.00 32.28 ATOM 182 CB HIS B 425 -31.706 14.216 31.731 1.00 24.91 ATOM 183 CG HIS B 425 -32.601 15.162 30.988 1.00 57.81 ATOM 184 ND1 HIS B 425 -33.681 15.784 31.576 1.00 41.97 ATOM 185 CD2 HIS B 425 -32.565 15.606 29.709 1.00 46.24 ATOM 186 CE1 HIS B 425 -34.276 16.564 30.691 1.00 26.20 ATOM 187 NE2 HIS B 425 -33.619 16.473 29.548 1.00 46.02 ATOM 188 N ILE B 426 -31.891 12.293 29.321 1.00 35.31 ATOM 189 CA ILE B 426 -32.354 11.960 27.976 1.00 50.26 ATOM 190 C ILE B 426 -33.028 10.596 27.967 1.00 35.95 ATOM 191 O ILE B 426 -34.029 10.383 27.271 1.00 47.13 ATOM 192 CB ILE B 426 -31.179 12.020 26.985 1.00 42.45 ATOM 193 CG1 ILE B 426 -30.627 13.444 26.909 1.00 41.80 ATOM 194 CG2 ILE B 426 -31.605 11.519 25.610 1.00 35.94 ATOM 195 CD1 ILE B 426 -29.362 13.565 26.100 1.00 49.13 ATOM 196 N LEU B 427 -32.501 9.655 28.750 1.00 38.26 ATOM 197 CA LEU B 427 -33.073 8.315 28.772 1.00 28.69 ATOM 198 C LEU B 427 -34.459 8.314 29.406 1.00 40.87 ATOM 199 O LEU B 427 -35.357 7.594 28.951 1.00 45.24 ATOM 200 CB LEU B 427 -32.134 7.363 29.510 1.00 35.72 ATOM 201 CG LEU B 427 -32.558 5.895 29.488 1.00 59.28 ATOM 202 CD1 LEU B 427 -32.573 5.382 28.057 1.00 64.05 ATOM 203 CD2 LEU B 427 -31.651 5.043 30.371 1.00 50.05 ATOM 204 N GLN B 428 -34.661 9.123 30.447 1.00 34.90 ATOM 205 CA GLN B 428 -35.940 9.143 31.148 1.00 36.47 ATOM 206 C GLN B 428 -36.942 10.127 30.560 1.00 29.23 ATOM 207 O GLN B 428 -38.151 9.941 30.746 1.00 49.87 ATOM 208 CB GLN B 428 -35.733 9.470 32.632 1.00 31.53 ATOM 209 CG GLN B 428 -34.851 8.476 33.370 1.00 36.02 ATOM 210 CD GLN B 428 -35.378 7.056 33.292 1.00 43.34 ATOM 211 OE1 GLN B 428 -36.586 6.829 33.196 1.00 44.89 ATOM 212 NE2 GLN B 428 -34.469 6.090 33.331 1.00 40.40 ATOM 213 N LYS B 429 -36.482 11.159 29.849 1.00 43.40 ATOM 214 CA LYS B 429 -37.383 12.185 29.342 1.00 33.26 ATOM 215 C LYS B 429 -37.555 12.181 27.831 1.00 48.52 ATOM 216 O LYS B 429 -38.574 12.681 27.347 1.00 49.68 ATOM 217 CB LYS B 429 -36.899 13.579 29.769 1.00 49.45 ATOM 218 CG LYS B 429 -36.803 13.783 31.271 1.00 36.85 ATOM 219 CD LYS B 429 -38.171 14.028 31.887 1.00 57.43 ATOM 220 CE LYS B 429 -38.054 14.382 33.365 1.00 79.00 ATOM 221 NZ LYS B 429 -37.189 15.577 33.608 1.00 69.85 ATOM 222 N HIS B 430 -36.599 11.639 27.074 1.00 49.87 ATOM 223 CA HIS B 430 -36.585 11.820 25.625 1.00 47.55 ATOM 224 C HIS B 430 -36.359 10.510 24.877 1.00 48.72 ATOM 225 O HIS B 430 -35.900 10.522 23.733 1.00 48.81 ATOM 226 CB HIS B 430 -35.513 12.830 25.217 1.00 36.55 ATOM 227 CG HIS B 430 -35.660 14.178 25.855 1.00 43.48 ATOM 228 ND1 HIS B 430 -36.803 14.939 25.739 1.00 30.88 ATOM 229 CD2 HIS B 430 -34.789 14.916 26.585 1.00 32.95 ATOM 230 CE1 HIS B 430 -36.636 16.082 26.382 1.00 37.26 ATOM 231 NE2 HIS B 430 -35.423 16.092 26.907 1.00 45.38 ATOM 232 N THR B 431 -36.670 9.371 25.492 1.00 35.42 ATOM 233 CA THR B 431 -36.342 8.083 24.890 1.00 43.47 ATOM 234 C THR B 431 -37.533 7.140 24.985 1.00 46.89 ATOM 235 O THR B 431 -38.162 7.035 26.040 1.00 55.52 ATOM 236 CB THR B 431 -35.110 7.462 25.562 1.00 40.87 ATOM 237 OG1 THR B 431 -34.001 8.362 25.435 1.00 49.00 ATOM 238 CG2 THR B 431 -34.739 6.143 24.902 1.00 33.07 ATOM 239 N GLU B 432 -37.832 6.462 23.879 0.50 60.59 ATOM 240 CA GLU B 432 -38.950 5.533 23.799 0.50 60.32 ATOM 241 C GLU B 432 -38.495 4.115 24.127 0.50 57.18 ATOM 242 O GLU B 432 -37.330 3.756 23.935 0.50 60.43 ATOM 243 CB GLU B 432 -39.577 5.564 22.402 0.50 60.26 ATOM 244 CG GLU B 432 -40.973 4.958 22.319 0.50 62.95 ATOM 245 CD GLU B 432 -41.420 4.697 20.892 0.50 71.70 ATOM 246 OE1 GLU B 432 -40.587 4.245 20.079 0.50 76.64 ATOM 247 OE2 GLU B 432 -42.605 4.944 20.582 0.50 71.79 ATOM 248 N ASN B 433 -39.435 3.311 24.631 1.00 47.77 ATOM 249 CA ASN B 433 -39.206 1.888 24.909 1.00 73.11 ATOM 250 C ASN B 433 -38.053 1.670 25.892 1.00 70.98 ATOM 251 O ASN B 433 -37.173 0.834 25.677 1.00 82.19 ATOM 252 CB ASN B 433 -38.969 1.105 23.613 1.00 85.42 ATOM 253 CG ASN B 433 -40.113 1.245 22.628 1.00 95.73 ATOM 254 OD1 ASN B 433 -39.917 1.673 21.489 1.00 91.05 ATOM 255 ND2 ASN B 433 -41.316 0.884 23.063 1.00 97.47 ATOM 256 N VAL B 434 -38.068 2.423 26.986 1.00 61.80 ATOM 257 CA VAL B 434 -37.054 2.287 28.027 1.00 70.25 ATOM 258 C VAL B 434 -37.538 1.266 29.046 1.00 56.67 ATOM 259 O VAL B 434 -38.582 1.454 29.680 1.00 53.61 ATOM 260 CB VAL B 434 -36.757 3.632 28.703 1.00 70.44 ATOM 261 CG1 VAL B 434 -35.690 3.447 29.768 1.00 40.38 ATOM 262 CG2 VAL B 434 -36.319 4.651 27.672 1.00 61.72 ATOM 263 ZN ZN B 603 -34.040 17.376 27.724 1.00 40.28 ATOM 264 C1 EDO B 606 -37.753 18.527 31.470 1.00 85.11 ATOM 265 O1 EDO B 606 -36.556 18.998 32.098 1.00 82.70 ATOM 266 C2 EDO B 606 -37.449 18.153 30.024 1.00 82.89 ATOM 267 O2 EDO B 606 -38.652 17.755 29.355 1.00 77.89 TER