HEADER TOXIN 31-DEC-69 5VMR TITLE Receptor binding domain of BoNT/B in complex with mini-protein binder TITLE 2 Bot.2110.4 COMPND MOL_ID: 2; COMPND 2 MOLECULE: Bot.2110.4; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.95 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG D 37 DBREF 5VMR D 1 43 PDB 5VMR 5VMR 1 43 SEQRES 1 D 38 ASP MET PHE CYS ALA LEU LYS ILE LYS PHE PHE LEU GLU SEQRES 2 D 38 ILE GLY ASP GLU ASP ALA ALA ARG LYS ALA ALA LYS LYS SEQRES 3 D 38 CYS GLY TYR SER GLU GLU GLN ALA GLU ARG ILE ILE ATOM 1 N ASP D 2 -3.269 100.496 54.866 1.00101.68 ATOM 2 CA ASP D 2 -2.942 101.915 54.762 1.00101.59 ATOM 3 C ASP D 2 -2.283 102.385 56.049 1.00 97.41 ATOM 4 O ASP D 2 -1.218 102.996 56.032 1.00 97.28 ATOM 5 CB ASP D 2 -4.196 102.746 54.483 1.00105.19 ATOM 6 N MET D 3 -2.931 102.090 57.171 1.00 94.25 ATOM 7 CA MET D 3 -2.330 102.315 58.476 1.00 89.80 ATOM 8 C MET D 3 -1.251 101.266 58.712 1.00 85.79 ATOM 9 O MET D 3 -0.157 101.574 59.193 1.00 86.09 ATOM 10 CB MET D 3 -3.393 102.268 59.578 1.00 89.34 ATOM 11 CG MET D 3 -2.849 102.033 60.985 1.00 86.37 ATOM 12 SD MET D 3 -1.904 103.432 61.633 1.00151.39 ATOM 13 CE MET D 3 -1.668 102.941 63.345 1.00 75.76 ATOM 14 N PHE D 4 -1.572 100.026 58.353 1.00 83.25 ATOM 15 CA PHE D 4 -0.636 98.916 58.445 1.00 79.94 ATOM 16 C PHE D 4 0.631 99.222 57.642 1.00 78.80 ATOM 17 O PHE D 4 1.754 99.022 58.119 1.00 76.40 ATOM 18 CB PHE D 4 -1.295 97.628 57.942 1.00 80.49 ATOM 19 CG PHE D 4 -0.412 96.416 58.042 1.00 78.89 ATOM 20 CD1 PHE D 4 -0.372 95.668 59.209 1.00 77.20 ATOM 21 CD2 PHE D 4 0.387 96.034 56.976 1.00 79.53 ATOM 22 CE1 PHE D 4 0.447 94.556 59.308 1.00 77.00 ATOM 23 CE2 PHE D 4 1.212 94.921 57.067 1.00 78.99 ATOM 24 CZ PHE D 4 1.243 94.178 58.233 1.00 77.92 ATOM 25 N CYS D 5 0.440 99.724 56.425 1.00 80.34 ATOM 26 CA CYS D 5 1.552 100.053 55.542 1.00 80.46 ATOM 27 C CYS D 5 2.443 101.104 56.195 1.00 77.62 ATOM 28 O CYS D 5 3.666 101.004 56.162 1.00 77.21 ATOM 29 CB CYS D 5 1.035 100.550 54.190 1.00 85.25 ATOM 30 SG CYS D 5 1.939 99.914 52.746 1.00128.53 ATOM 31 N ALA D 6 1.820 102.100 56.814 1.00 76.15 ATOM 32 CA ALA D 6 2.556 103.165 57.482 1.00 74.81 ATOM 33 C ALA D 6 3.416 102.597 58.604 1.00 71.67 ATOM 34 O ALA D 6 4.543 103.033 58.821 1.00 72.49 ATOM 35 CB ALA D 6 1.605 104.208 58.021 1.00 76.18 ATOM 36 N LEU D 7 2.871 101.623 59.326 1.00 68.92 ATOM 37 CA LEU D 7 3.605 101.011 60.426 1.00 66.43 ATOM 38 C LEU D 7 4.758 100.173 59.913 1.00 65.37 ATOM 39 O LEU D 7 5.842 100.148 60.503 1.00 63.34 ATOM 40 CB LEU D 7 2.677 100.153 61.270 1.00 65.86 ATOM 41 CG LEU D 7 1.606 100.986 61.965 1.00 66.28 ATOM 42 CD1 LEU D 7 0.404 100.119 62.274 1.00 65.53 ATOM 43 CD2 LEU D 7 2.181 101.611 63.219 1.00 65.63 ATOM 44 N LYS D 8 4.505 99.479 58.812 1.00 66.85 ATOM 45 CA LYS D 8 5.519 98.655 58.166 1.00 68.78 ATOM 46 C LYS D 8 6.737 99.522 57.806 1.00 67.64 ATOM 47 O LYS D 8 7.885 99.125 58.008 1.00 67.07 ATOM 48 CB LYS D 8 4.901 97.970 56.945 1.00 73.91 ATOM 49 CG LYS D 8 5.796 97.026 56.191 1.00 77.60 ATOM 50 CD LYS D 8 4.942 96.001 55.444 1.00 81.41 ATOM 51 CE LYS D 8 4.376 96.558 54.147 1.00 86.47 ATOM 52 NZ LYS D 8 5.423 97.185 53.304 1.00 89.93 ATOM 53 N ILE D 9 6.475 100.740 57.344 1.00 68.43 ATOM 54 CA ILE D 9 7.546 101.685 57.044 1.00 71.16 ATOM 55 C ILE D 9 8.334 102.048 58.292 1.00 70.82 ATOM 56 O ILE D 9 9.568 102.066 58.266 1.00 65.79 ATOM 57 CB ILE D 9 6.993 102.980 56.411 1.00 74.10 ATOM 58 CG1 ILE D 9 6.252 102.650 55.113 1.00 76.72 ATOM 59 CG2 ILE D 9 8.110 104.007 56.192 1.00 75.84 ATOM 60 CD1 ILE D 9 5.439 103.791 54.574 1.00 78.56 ATOM 61 N LYS D 10 7.636 102.336 59.392 1.00 63.89 ATOM 62 CA LYS D 10 8.349 102.730 60.602 1.00 71.49 ATOM 63 C LYS D 10 9.093 101.545 61.196 1.00 66.25 ATOM 64 O LYS D 10 10.153 101.711 61.804 1.00 63.52 ATOM 65 CB LYS D 10 7.413 103.335 61.652 1.00 74.39 ATOM 66 CG LYS D 10 8.216 104.019 62.749 1.00 78.30 ATOM 67 CD LYS D 10 7.448 105.113 63.449 1.00 83.97 ATOM 68 CE LYS D 10 8.405 106.045 64.179 1.00 89.21 ATOM 69 NZ LYS D 10 9.660 105.347 64.567 1.00 92.14 ATOM 70 N PHE D 11 8.542 100.349 61.014 1.00 65.11 ATOM 71 CA PHE D 11 9.257 99.152 61.438 1.00 65.87 ATOM 72 C PHE D 11 10.587 99.072 60.703 1.00 68.19 ATOM 73 O PHE D 11 11.660 98.920 61.318 1.00 68.50 ATOM 74 CB PHE D 11 8.462 97.886 61.160 1.00 66.54 ATOM 75 CG PHE D 11 9.237 96.638 61.440 1.00 66.48 ATOM 76 CD1 PHE D 11 9.444 96.217 62.752 1.00 65.61 ATOM 77 CD2 PHE D 11 9.813 95.909 60.403 1.00 69.22 ATOM 78 CE1 PHE D 11 10.178 95.067 63.027 1.00 67.21 ATOM 79 CE2 PHE D 11 10.558 94.759 60.664 1.00 69.08 ATOM 80 CZ PHE D 11 10.740 94.333 61.984 1.00 69.16 ATOM 81 N PHE D 12 10.522 99.215 59.384 1.00 70.13 ATOM 82 CA PHE D 12 11.752 99.133 58.611 1.00 73.73 ATOM 83 C PHE D 12 12.709 100.222 59.063 1.00 72.52 ATOM 84 O PHE D 12 13.865 99.934 59.262 1.00 72.91 ATOM 85 CB PHE D 12 11.478 99.194 57.108 1.00 79.20 ATOM 86 CG PHE D 12 10.859 97.935 56.573 1.00 83.79 ATOM 87 CD1 PHE D 12 11.289 96.700 57.037 1.00 85.61 ATOM 88 CD2 PHE D 12 9.863 97.976 55.613 1.00 86.00 ATOM 89 CE1 PHE D 12 10.723 95.525 56.567 1.00 86.52 ATOM 90 CE2 PHE D 12 9.298 96.800 55.129 1.00 87.51 ATOM 91 CZ PHE D 12 9.731 95.575 55.607 1.00 86.83 ATOM 92 N LEU D 13 12.231 101.433 59.336 1.00 71.43 ATOM 93 CA LEU D 13 13.115 102.460 59.909 1.00 71.08 ATOM 94 C LEU D 13 13.678 102.050 61.274 1.00 69.18 ATOM 95 O LEU D 13 14.830 102.316 61.601 1.00 70.11 ATOM 96 CB LEU D 13 12.369 103.790 60.053 1.00 70.57 ATOM 97 CG LEU D 13 11.917 104.447 58.748 1.00 71.68 ATOM 98 CD1 LEU D 13 11.117 105.696 59.039 1.00 72.53 ATOM 99 CD2 LEU D 13 13.127 104.783 57.905 1.00 74.07 ATOM 100 N GLU D 14 12.833 101.418 62.079 1.00 67.81 ATOM 101 CA GLU D 14 13.213 100.990 63.422 1.00 68.70 ATOM 102 C GLU D 14 14.358 99.953 63.410 1.00 68.39 ATOM 103 O GLU D 14 15.168 99.906 64.331 1.00 68.22 ATOM 104 CB GLU D 14 11.965 100.450 64.149 1.00 70.19 ATOM 105 CG GLU D 14 12.177 100.065 65.601 1.00 72.13 ATOM 106 CD GLU D 14 12.235 101.247 66.561 1.00 74.11 ATOM 107 OE1 GLU D 14 11.379 102.159 66.484 1.00 74.53 ATOM 108 OE2 GLU D 14 13.155 101.256 67.404 1.00 75.65 ATOM 109 N ILE D 15 14.429 99.129 62.369 1.00 69.48 ATOM 110 CA ILE D 15 15.460 98.089 62.289 1.00 71.56 ATOM 111 C ILE D 15 16.676 98.459 61.403 1.00 74.96 ATOM 112 O ILE D 15 17.528 97.610 61.148 1.00 75.54 ATOM 113 CB ILE D 15 14.865 96.746 61.769 1.00 66.89 ATOM 114 CG1 ILE D 15 14.493 96.840 60.289 1.00 67.79 ATOM 115 CG2 ILE D 15 13.616 96.340 62.574 1.00 64.73 ATOM 116 CD1 ILE D 15 14.163 95.501 59.659 1.00 68.45 ATOM 117 N GLY D 16 16.783 99.712 60.959 1.00 79.53 ATOM 118 CA GLY D 16 17.821 100.068 59.990 1.00 88.04 ATOM 119 C GLY D 16 17.245 99.727 58.631 1.00 93.48 ATOM 120 O GLY D 16 16.057 99.772 58.486 1.00 91.64 ATOM 121 N ASP D 17 18.040 99.388 57.632 1.00 99.93 ATOM 122 CA ASP D 17 17.445 99.046 56.331 1.00104.41 ATOM 123 C ASP D 17 16.539 100.189 55.846 1.00106.70 ATOM 124 O ASP D 17 15.309 100.058 55.769 1.00105.62 ATOM 125 CB ASP D 17 16.655 97.726 56.412 1.00105.19 ATOM 126 CG ASP D 17 16.242 97.194 55.041 1.00108.93 ATOM 127 OD1 ASP D 17 16.280 97.956 54.053 1.00111.22 ATOM 128 OD2 ASP D 17 15.870 96.006 54.954 1.00109.62 ATOM 129 N GLU D 18 17.172 101.312 55.533 1.00111.67 ATOM 130 CA GLU D 18 16.489 102.476 54.996 1.00115.99 ATOM 131 C GLU D 18 15.827 102.104 53.672 1.00113.75 ATOM 132 O GLU D 18 14.803 102.671 53.282 1.00112.77 ATOM 133 CB GLU D 18 17.496 103.616 54.821 1.00124.90 ATOM 134 CG GLU D 18 16.931 104.937 54.338 1.00132.69 ATOM 135 CD GLU D 18 18.002 106.015 54.251 1.00139.51 ATOM 136 OE1 GLU D 18 19.174 105.721 54.568 1.00142.55 ATOM 137 OE2 GLU D 18 17.678 107.152 53.843 1.00142.82 ATOM 138 N ASP D 19 16.399 101.097 53.019 1.00112.23 ATOM 139 CA ASP D 19 15.975 100.663 51.698 1.00110.54 ATOM 140 C ASP D 19 14.550 100.117 51.684 1.00103.72 ATOM 141 O ASP D 19 13.718 100.556 50.889 1.00104.71 ATOM 142 CB ASP D 19 16.925 99.584 51.181 1.00114.17 ATOM 143 CG ASP D 19 16.724 99.289 49.713 1.00119.26 ATOM 144 OD1 ASP D 19 16.084 100.106 49.018 1.00120.79 ATOM 145 OD2 ASP D 19 17.169 98.216 49.261 1.00122.18 ATOM 146 N ALA D 20 14.289 99.137 52.547 1.00 96.72 ATOM 147 CA ALA D 20 12.960 98.546 52.665 1.00 91.27 ATOM 148 C ALA D 20 11.925 99.606 53.039 1.00 87.09 ATOM 149 O ALA D 20 10.801 99.592 52.533 1.00 85.92 ATOM 150 CB ALA D 20 12.971 97.419 53.691 1.00 89.14 ATOM 151 N ALA D 21 12.327 100.535 53.903 1.00 84.92 ATOM 152 CA ALA D 21 11.476 101.662 54.263 1.00 82.96 ATOM 153 C ALA D 21 11.049 102.426 53.008 1.00 86.55 ATOM 154 O ALA D 21 9.856 102.663 52.790 1.00 86.19 ATOM 155 CB ALA D 21 12.200 102.588 55.241 1.00 80.55 ATOM 156 N ARG D 22 12.029 102.779 52.178 1.00 91.35 ATOM 157 CA ARG D 22 11.770 103.494 50.928 1.00 97.42 ATOM 158 C ARG D 22 10.867 102.694 49.996 1.00100.70 ATOM 159 O ARG D 22 9.909 103.229 49.434 1.00102.62 ATOM 160 CB ARG D 22 13.082 103.815 50.212 1.00100.73 ATOM 161 CG ARG D 22 13.382 105.293 50.077 1.00102.62 ATOM 162 CD ARG D 22 14.748 105.505 49.443 1.00106.03 ATOM 163 NE ARG D 22 15.541 106.483 50.180 1.00107.37 ATOM 164 CZ ARG D 22 16.586 106.176 50.941 1.00106.74 ATOM 165 NH1 ARG D 22 16.975 104.910 51.072 1.00105.49 ATOM 166 NH2 ARG D 22 17.247 107.137 51.572 1.00107.22 ATOM 167 N LYS D 23 11.174 101.409 49.840 1.00102.65 ATOM 168 CA LYS D 23 10.404 100.550 48.946 1.00106.81 ATOM 169 C LYS D 23 8.951 100.487 49.385 1.00104.54 ATOM 170 O LYS D 23 8.046 100.644 48.568 1.00107.51 ATOM 171 CB LYS D 23 10.988 99.134 48.892 1.00109.39 ATOM 172 CG LYS D 23 12.171 98.985 47.949 1.00112.76 ATOM 173 CD LYS D 23 13.126 97.879 48.381 1.00112.82 ATOM 174 CE LYS D 23 14.396 97.913 47.540 1.00117.33 ATOM 175 NZ LYS D 23 14.162 97.479 46.140 1.00122.08 ATOM 176 N ALA D 24 8.739 100.288 50.685 1.00 99.55 ATOM 177 CA ALA D 24 7.396 100.153 51.226 1.00 97.49 ATOM 178 C ALA D 24 6.626 101.447 51.015 1.00 99.01 ATOM 179 O ALA D 24 5.467 101.425 50.607 1.00 99.14 ATOM 180 CB ALA D 24 7.446 99.787 52.700 1.00 94.55 ATOM 181 N ALA D 25 7.283 102.573 51.281 1.00101.47 ATOM 182 CA ALA D 25 6.686 103.889 51.073 1.00104.90 ATOM 183 C ALA D 25 6.238 104.094 49.621 1.00110.53 ATOM 184 O ALA D 25 5.147 104.613 49.374 1.00111.56 ATOM 185 CB ALA D 25 7.661 104.976 51.485 1.00104.75 ATOM 186 N LYS D 26 7.069 103.676 48.668 1.00114.53 ATOM 187 CA LYS D 26 6.716 103.789 47.252 1.00119.94 ATOM 188 C LYS D 26 5.462 102.974 46.931 1.00121.43 ATOM 189 O LYS D 26 4.544 103.475 46.283 1.00122.52 ATOM 190 CB LYS D 26 7.882 103.340 46.361 1.00122.47 ATOM 191 CG LYS D 26 9.105 104.253 46.418 1.00123.63 ATOM 192 CD LYS D 26 10.253 103.732 45.549 1.00126.32 ATOM 193 CE LYS D 26 11.462 104.667 45.607 1.00128.03 ATOM 194 NZ LYS D 26 12.619 104.162 44.811 1.00131.07 ATOM 195 N LYS D 27 5.421 101.731 47.410 1.00122.04 ATOM 196 CA LYS D 27 4.259 100.857 47.236 1.00124.98 ATOM 197 C LYS D 27 3.024 101.354 47.991 1.00125.74 ATOM 198 O LYS D 27 1.905 101.246 47.490 1.00128.42 ATOM 199 CB LYS D 27 4.587 99.431 47.693 1.00123.48 ATOM 200 CG LYS D 27 5.852 98.837 47.094 1.00124.09 ATOM 201 CD LYS D 27 6.509 97.873 48.076 1.00121.08 ATOM 202 CE LYS D 27 5.776 96.543 48.146 1.00121.28 ATOM 203 NZ LYS D 27 6.453 95.595 49.074 1.00119.42 ATOM 204 N CYS D 28 3.238 101.872 49.202 1.00123.88 ATOM 205 CA CYS D 28 2.151 102.287 50.098 1.00123.69 ATOM 206 C CYS D 28 1.236 103.358 49.506 1.00126.13 ATOM 207 O CYS D 28 0.050 103.413 49.827 1.00126.43 ATOM 208 CB CYS D 28 2.717 102.798 51.427 1.00121.84 ATOM 209 SG CYS D 28 3.167 101.522 52.626 1.00161.63 ATOM 210 N GLY D 29 1.847 104.119 48.604 1.00122.84 ATOM 211 CA GLY D 29 1.307 105.331 48.039 1.00117.74 ATOM 212 C GLY D 29 1.988 106.669 48.275 1.00112.37 ATOM 213 O GLY D 29 1.490 107.694 47.841 1.00110.16 ATOM 214 N TYR D 30 3.159 106.702 48.885 1.00110.03 ATOM 215 CA TYR D 30 3.775 107.988 49.188 1.00106.12 ATOM 216 C TYR D 30 4.619 108.606 48.064 1.00107.33 ATOM 217 O TYR D 30 4.930 107.957 47.082 1.00104.99 ATOM 218 CB TYR D 30 4.649 107.881 50.431 1.00100.65 ATOM 219 CG TYR D 30 3.921 107.580 51.694 1.00 97.84 ATOM 220 CD1 TYR D 30 3.387 108.586 52.455 1.00 96.93 ATOM 221 CD2 TYR D 30 3.788 106.293 52.131 1.00 97.56 ATOM 222 CE1 TYR D 30 2.725 108.316 53.619 1.00101.00 ATOM 223 CE2 TYR D 30 3.126 106.005 53.291 1.00101.70 ATOM 224 CZ TYR D 30 2.599 107.024 54.030 1.00103.14 ATOM 225 OH TYR D 30 1.945 106.729 55.186 1.00108.28 ATOM 226 N SER D 31 4.968 109.878 48.227 0.94113.11 ATOM 227 CA SER D 31 5.728 110.598 47.212 0.94116.10 ATOM 228 C SER D 31 7.223 110.315 47.316 0.94122.20 ATOM 229 O SER D 31 7.790 110.318 48.410 0.94128.22 ATOM 230 CB SER D 31 5.472 112.103 47.319 0.94116.24 ATOM 231 N GLU D 32 7.855 110.072 46.173 0.94122.90 ATOM 232 CA GLU D 32 9.288 109.813 46.132 0.94125.15 ATOM 233 C GLU D 32 10.036 110.828 46.987 0.94127.53 ATOM 234 O GLU D 32 10.927 110.470 47.758 0.94131.04 ATOM 235 CB GLU D 32 9.801 109.856 44.692 0.94121.69 ATOM 236 N GLU D 33 9.668 112.097 46.847 0.93125.94 ATOM 237 CA GLU D 33 10.306 113.167 47.605 0.93126.59 ATOM 238 C GLU D 33 9.819 113.189 49.050 0.93127.36 ATOM 239 O GLU D 33 10.612 113.339 49.979 0.93134.12 ATOM 240 CB GLU D 33 10.044 114.522 46.941 0.93126.04 ATOM 241 N GLN D 34 8.511 113.038 49.231 1.00121.10 ATOM 242 CA GLN D 34 7.917 113.043 50.562 1.00118.89 ATOM 243 C GLN D 34 8.387 111.849 51.384 1.00115.79 ATOM 244 O GLN D 34 8.195 111.804 52.600 1.00120.53 ATOM 245 CB GLN D 34 6.389 113.047 50.467 1.00119.66 ATOM 246 N ALA D 35 9.000 110.882 50.708 0.89108.83 ATOM 247 CA ALA D 35 9.560 109.715 51.374 0.89109.84 ATOM 248 C ALA D 35 10.927 110.067 51.942 0.89109.43 ATOM 249 O ALA D 35 11.360 109.507 52.949 0.89114.38 ATOM 250 CB ALA D 35 9.668 108.549 50.404 0.89107.99 ATOM 251 N GLU D 36 11.602 111.007 51.287 1.00104.14 ATOM 252 CA GLU D 36 12.898 111.483 51.750 1.00104.33 ATOM 253 C GLU D 36 12.745 112.177 53.097 1.00108.92 ATOM 254 O GLU D 36 13.594 112.038 53.978 1.00112.63 ATOM 255 CB GLU D 36 13.515 112.441 50.729 1.00 99.75 ATOM 256 N ILE D 38 10.185 111.585 55.311 1.00 92.84 ATOM 257 CA ILE D 38 9.854 110.681 56.419 1.00 99.08 ATOM 258 C ILE D 38 11.093 110.029 57.036 1.00101.97 ATOM 259 O ILE D 38 11.158 109.814 58.248 1.00109.60 ATOM 260 CB ILE D 38 8.877 109.590 55.940 1.00 98.54 ATOM 261 N ILE D 39 12.068 109.712 56.191 1.00 97.26 ATOM 262 CA ILE D 39 13.335 109.159 56.649 1.00 99.73 ATOM 263 C ILE D 39 14.183 110.234 57.323 1.00102.53 ATOM 264 O ILE D 39 14.601 110.087 58.470 1.00108.87 ATOM 265 CB ILE D 39 14.133 108.546 55.490 1.00 94.95 ATOM 266 CG1 ILE D 39 13.331 107.432 54.815 1.00 93.49 ATOM 267 CG2 ILE D 39 15.475 108.041 55.987 1.00 98.34 ATOM 268 CD1 ILE D 39 13.934 106.956 53.513 1.00 89.42 TER