HEADER TRANSCRIPTION/DNA 31-DEC-69 5VMX TITLE Kaiso (ZBTB33) zinc finger DNA binding domain in complex with a hemi TITLE 2 CpG-methylated DNA resembling the specific Kaiso binding sequence COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional regulator Kaiso; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.05 ANGSTORMS DBREF 5VMX A 471 604 UNP Q86T24 KAISO_HUMAN 471 604 SEQRES 1 A 25 LYS LYS TYR PRO CYS ARG TYR CYS GLU LYS VAL PHE PRO SEQRES 2 A 25 LEU ALA GLU TYR ARG THR LYS HIS GLU ILE HIS HIS ATOM 1 N LYS A 520 45.190 384.025 24.663 1.00 70.45 ATOM 2 CA LYS A 520 44.995 385.404 25.087 1.00 67.03 ATOM 3 C LYS A 520 45.106 386.335 23.889 1.00 65.41 ATOM 4 O LYS A 520 45.956 386.151 23.023 1.00 66.14 ATOM 5 CB LYS A 520 46.006 385.810 26.162 1.00 72.84 ATOM 6 CG LYS A 520 45.769 385.143 27.510 1.00 91.79 ATOM 7 CD LYS A 520 46.573 385.825 28.608 1.00 96.13 ATOM 8 CE LYS A 520 46.373 385.142 29.955 1.00104.08 ATOM 9 NZ LYS A 520 47.181 385.804 31.022 1.00102.43 ATOM 10 N LYS A 521 44.234 387.329 23.834 1.00 60.48 ATOM 11 CA LYS A 521 44.277 388.292 22.744 1.00 61.40 ATOM 12 C LYS A 521 44.527 389.682 23.289 1.00 60.99 ATOM 13 O LYS A 521 44.035 390.037 24.364 1.00 60.85 ATOM 14 CB LYS A 521 42.977 388.253 21.931 1.00 65.18 ATOM 15 CG LYS A 521 42.774 386.922 21.219 1.00 78.16 ATOM 16 CD LYS A 521 41.709 387.010 20.143 1.00 83.98 ATOM 17 CE LYS A 521 41.569 385.684 19.421 1.00 84.21 ATOM 18 NZ LYS A 521 41.247 384.580 20.366 1.00 94.90 ATOM 19 N TYR A 522 45.300 390.464 22.544 1.00 52.08 ATOM 20 CA TYR A 522 45.580 391.836 22.927 1.00 48.06 ATOM 21 C TYR A 522 45.111 392.801 21.836 1.00 49.08 ATOM 22 O TYR A 522 45.886 393.185 20.963 1.00 47.65 ATOM 23 CB TYR A 522 47.076 392.001 23.217 1.00 44.80 ATOM 24 CG TYR A 522 47.562 391.036 24.268 1.00 49.95 ATOM 25 CD1 TYR A 522 47.491 391.356 25.617 1.00 55.08 ATOM 26 CD2 TYR A 522 48.063 389.787 23.916 1.00 55.51 ATOM 27 CE1 TYR A 522 47.924 390.464 26.586 1.00 55.50 ATOM 28 CE2 TYR A 522 48.495 388.891 24.876 1.00 55.50 ATOM 29 CZ TYR A 522 48.426 389.239 26.210 1.00 58.97 ATOM 30 OH TYR A 522 48.850 388.358 27.179 1.00 53.55 ATOM 31 N PRO A 523 43.830 393.190 21.880 1.00 54.14 ATOM 32 CA PRO A 523 43.261 394.052 20.833 1.00 61.75 ATOM 33 C PRO A 523 43.621 395.530 21.016 1.00 56.58 ATOM 34 O PRO A 523 43.609 395.999 22.161 1.00 51.39 ATOM 35 CB PRO A 523 41.755 393.836 20.996 1.00 68.44 ATOM 36 CG PRO A 523 41.585 393.561 22.458 1.00 67.09 ATOM 37 CD PRO A 523 42.846 392.863 22.927 1.00 63.25 ATOM 38 N CYS A 524 43.954 396.227 19.922 1.00 55.66 ATOM 39 CA CYS A 524 44.249 397.672 19.949 1.00 57.09 ATOM 40 C CYS A 524 42.986 398.406 20.371 1.00 51.39 ATOM 41 O CYS A 524 41.895 398.072 19.912 1.00 51.14 ATOM 42 CB CYS A 524 44.739 398.174 18.574 1.00 56.51 ATOM 43 SG CYS A 524 44.944 400.016 18.339 1.00 38.10 ATOM 44 N ARG A 525 43.103 399.358 21.268 0.60 53.41 ATOM 45 CA ARG A 525 41.968 400.132 21.695 0.60 59.95 ATOM 46 C ARG A 525 41.541 401.229 20.738 0.60 60.09 ATOM 47 O ARG A 525 40.630 401.944 21.038 0.60 65.07 ATOM 48 CB ARG A 525 42.236 400.719 23.059 0.60 59.15 ATOM 49 CG ARG A 525 41.987 399.764 24.201 0.60 59.37 ATOM 50 CD ARG A 525 42.881 398.539 24.121 0.60 49.70 ATOM 51 NE ARG A 525 44.254 398.834 24.519 0.60 49.28 ATOM 52 CZ ARG A 525 44.759 398.577 25.707 0.60 39.22 ATOM 53 NH1 ARG A 525 44.019 398.006 26.626 0.60 51.40 ATOM 54 NH2 ARG A 525 46.002 398.887 25.973 0.60 36.11 ATOM 55 N TYR A 526 42.234 401.405 19.628 1.00 58.00 ATOM 56 CA TYR A 526 41.953 402.511 18.704 1.00 57.31 ATOM 57 C TYR A 526 41.587 402.029 17.315 1.00 53.16 ATOM 58 O TYR A 526 41.004 402.776 16.529 1.00 62.47 ATOM 59 CB TYR A 526 43.153 403.458 18.589 1.00 48.05 ATOM 60 CG TYR A 526 43.626 404.011 19.899 1.00 52.55 ATOM 61 CD1 TYR A 526 43.087 405.180 20.421 1.00 52.87 ATOM 62 CD2 TYR A 526 44.619 403.367 20.617 1.00 48.36 ATOM 63 CE1 TYR A 526 43.540 405.693 21.633 1.00 49.82 ATOM 64 CE2 TYR A 526 45.073 403.870 21.822 1.00 55.81 ATOM 65 CZ TYR A 526 44.530 405.036 22.323 1.00 46.38 ATOM 66 OH TYR A 526 44.986 405.517 23.525 1.00 59.11 ATOM 67 N CYS A 527 41.964 400.795 16.997 1.00 54.25 ATOM 68 CA CYS A 527 41.560 400.196 15.735 1.00 61.39 ATOM 69 C CYS A 527 41.247 398.717 15.956 1.00 63.95 ATOM 70 O CYS A 527 41.168 398.249 17.093 1.00 58.93 ATOM 71 CB CYS A 527 42.638 400.386 14.653 1.00 47.45 ATOM 72 SG CYS A 527 44.097 399.315 14.733 1.00 53.16 ATOM 73 N GLU A 528 41.060 397.992 14.862 1.00 60.97 ATOM 74 CA GLU A 528 40.570 396.618 14.926 1.00 67.63 ATOM 75 C GLU A 528 41.693 395.585 15.081 1.00 65.35 ATOM 76 O GLU A 528 41.419 394.403 15.244 1.00 74.30 ATOM 77 CB GLU A 528 39.728 396.306 13.678 1.00 79.43 ATOM 78 CG GLU A 528 40.507 396.229 12.358 1.00 93.54 ATOM 79 CD GLU A 528 41.197 397.535 11.968 1.00105.09 ATOM 80 OE1 GLU A 528 42.283 397.463 11.351 1.00109.85 ATOM 81 OE2 GLU A 528 40.662 398.628 12.274 1.00103.09 ATOM 82 N LYS A 529 42.951 396.029 15.056 1.00 60.07 ATOM 83 CA LYS A 529 44.080 395.090 15.082 1.00 61.34 ATOM 84 C LYS A 529 44.232 394.366 16.419 1.00 58.62 ATOM 85 O LYS A 529 43.952 394.924 17.479 1.00 56.52 ATOM 86 CB LYS A 529 45.383 395.815 14.735 1.00 59.08 ATOM 87 CG LYS A 529 45.443 396.283 13.291 1.00 69.96 ATOM 88 CD LYS A 529 46.836 396.756 12.926 1.00 81.39 ATOM 89 CE LYS A 529 47.804 395.595 12.856 1.00 91.94 ATOM 90 NZ LYS A 529 49.189 396.070 12.588 1.00 94.59 ATOM 91 N VAL A 530 44.680 393.114 16.360 1.00 61.81 ATOM 92 CA VAL A 530 44.851 392.302 17.558 1.00 58.86 ATOM 93 C VAL A 530 46.230 391.634 17.570 1.00 59.70 ATOM 94 O VAL A 530 46.691 391.143 16.542 1.00 56.86 ATOM 95 CB VAL A 530 43.751 391.226 17.661 1.00 63.32 ATOM 96 CG1 VAL A 530 43.909 390.427 18.944 1.00 60.55 ATOM 97 CG2 VAL A 530 42.373 391.872 17.597 1.00 64.85 ATOM 98 N PHE A 531 46.877 391.615 18.736 1.00 49.33 ATOM 99 CA PHE A 531 48.263 391.150 18.868 1.00 47.51 ATOM 100 C PHE A 531 48.388 389.974 19.830 1.00 50.44 ATOM 101 O PHE A 531 47.611 389.873 20.776 1.00 49.22 ATOM 102 CB PHE A 531 49.157 392.309 19.340 1.00 48.58 ATOM 103 CG PHE A 531 49.114 393.508 18.434 1.00 45.43 ATOM 104 CD1 PHE A 531 48.127 394.463 18.577 1.00 42.23 ATOM 105 CD2 PHE A 531 50.053 393.661 17.423 1.00 46.05 ATOM 106 CE1 PHE A 531 48.077 395.558 17.732 1.00 46.39 ATOM 107 CE2 PHE A 531 50.013 394.749 16.579 1.00 44.77 ATOM 108 CZ PHE A 531 49.022 395.704 16.734 1.00 41.06 ATOM 109 N PRO A 532 49.382 389.085 19.595 1.00 52.38 ATOM 110 CA PRO A 532 49.610 387.910 20.444 1.00 47.88 ATOM 111 C PRO A 532 50.489 388.201 21.665 1.00 48.36 ATOM 112 O PRO A 532 50.626 387.328 22.534 1.00 49.64 ATOM 113 CB PRO A 532 50.319 386.936 19.494 1.00 54.40 ATOM 114 CG PRO A 532 51.140 387.847 18.620 1.00 49.51 ATOM 115 CD PRO A 532 50.302 389.108 18.441 1.00 43.52 ATOM 116 N LEU A 533 51.089 389.395 21.709 1.00 45.70 ATOM 117 CA LEU A 533 51.877 389.846 22.856 1.00 42.81 ATOM 118 C LEU A 533 51.399 391.223 23.311 1.00 46.31 ATOM 119 O LEU A 533 51.099 392.091 22.483 1.00 37.23 ATOM 120 CB LEU A 533 53.376 389.919 22.527 1.00 43.09 ATOM 121 CG LEU A 533 54.245 388.680 22.780 1.00 39.11 ATOM 122 CD1 LEU A 533 53.923 387.600 21.758 1.00 39.42 ATOM 123 CD2 LEU A 533 55.745 389.050 22.764 1.00 34.14 ATOM 124 N ALA A 534 51.345 391.426 24.624 1.00 43.67 ATOM 125 CA ALA A 534 50.925 392.715 25.169 1.00 41.84 ATOM 126 C ALA A 534 51.841 393.845 24.678 1.00 34.92 ATOM 127 O ALA A 534 51.354 394.917 24.291 1.00 38.28 ATOM 128 CB ALA A 534 50.897 392.664 26.704 1.00 39.56 ATOM 129 N GLU A 535 53.153 393.602 24.640 1.00 33.79 ATOM 130 CA GLU A 535 54.087 394.690 24.294 1.00 36.42 ATOM 131 C GLU A 535 53.955 395.105 22.819 1.00 40.47 ATOM 132 O GLU A 535 54.240 396.264 22.465 1.00 36.74 ATOM 133 CB GLU A 535 55.540 394.297 24.604 1.00 36.66 ATOM 134 CG GLU A 535 56.085 393.161 23.749 1.00 37.58 ATOM 135 CD GLU A 535 57.590 392.965 23.912 1.00 43.37 ATOM 136 OE1 GLU A 535 58.024 392.560 25.011 1.00 38.40 ATOM 137 OE2 GLU A 535 58.335 393.203 22.936 1.00 44.58 ATOM 138 N TYR A 536 53.517 394.176 21.961 1.00 30.74 ATOM 139 CA TYR A 536 53.334 394.519 20.547 1.00 31.96 ATOM 140 C TYR A 536 52.164 395.488 20.447 1.00 34.61 ATOM 141 O TYR A 536 52.207 396.485 19.703 1.00 35.56 ATOM 142 CB TYR A 536 53.069 393.281 19.667 1.00 33.53 ATOM 143 CG TYR A 536 54.189 392.252 19.558 1.00 38.95 ATOM 144 CD1 TYR A 536 55.431 392.450 20.157 1.00 39.19 ATOM 145 CD2 TYR A 536 53.986 391.066 18.856 1.00 34.18 ATOM 146 CE1 TYR A 536 56.449 391.472 20.053 1.00 35.28 ATOM 147 CE2 TYR A 536 54.988 390.095 18.747 1.00 37.70 ATOM 148 CZ TYR A 536 56.206 390.300 19.348 1.00 39.96 ATOM 149 OH TYR A 536 57.181 389.331 19.230 1.00 39.77 ATOM 150 N ARG A 537 51.115 395.197 21.215 1.00 32.99 ATOM 151 CA ARG A 537 49.973 396.087 21.251 1.00 34.18 ATOM 152 C ARG A 537 50.354 397.461 21.816 1.00 38.75 ATOM 153 O ARG A 537 49.954 398.495 21.275 1.00 38.65 ATOM 154 CB ARG A 537 48.829 395.508 22.073 1.00 36.36 ATOM 155 CG ARG A 537 47.754 396.584 22.287 1.00 37.73 ATOM 156 CD ARG A 537 46.559 396.084 22.988 1.00 44.90 ATOM 157 NE ARG A 537 46.849 395.687 24.353 1.00 51.05 ATOM 158 CZ ARG A 537 45.926 395.237 25.189 1.00 51.51 ATOM 159 NH1 ARG A 537 44.666 395.158 24.786 1.00 53.56 ATOM 160 NH2 ARG A 537 46.260 394.884 26.420 1.00 58.16 ATOM 161 N THR A 538 51.127 397.488 22.898 1.00 37.67 ATOM 162 CA THR A 538 51.511 398.785 23.473 1.00 43.48 ATOM 163 C THR A 538 52.318 399.648 22.488 1.00 34.53 ATOM 164 O THR A 538 51.985 400.842 22.229 1.00 37.83 ATOM 165 CB THR A 538 52.321 398.597 24.752 1.00 43.53 ATOM 166 OG1 THR A 538 51.541 397.834 25.678 1.00 40.47 ATOM 167 CG2 THR A 538 52.647 399.943 25.373 1.00 49.17 ATOM 168 N LYS A 539 53.372 399.048 21.933 1.00 34.72 ATOM 169 CA LYS A 539 54.158 399.738 20.905 1.00 37.23 ATOM 170 C LYS A 539 53.277 400.231 19.758 1.00 42.73 ATOM 171 O LYS A 539 53.507 401.307 19.212 1.00 37.93 ATOM 172 CB LYS A 539 55.252 398.832 20.353 1.00 37.69 ATOM 173 CG LYS A 539 56.325 398.467 21.356 1.00 48.03 ATOM 174 CD LYS A 539 57.374 399.547 21.475 1.00 57.97 ATOM 175 CE LYS A 539 58.680 398.974 22.011 1.00 61.57 ATOM 176 NZ LYS A 539 59.261 397.896 21.130 1.00 65.67 ATOM 177 N HIS A 540 52.271 399.440 19.389 1.00 35.82 ATOM 178 CA HIS A 540 51.361 399.855 18.330 1.00 31.98 ATOM 179 C HIS A 540 50.473 401.053 18.709 1.00 37.40 ATOM 180 O HIS A 540 50.242 401.959 17.901 1.00 37.15 ATOM 181 CB HIS A 540 50.477 398.680 17.932 1.00 39.66 ATOM 182 CG HIS A 540 49.340 399.062 17.047 1.00 39.74 ATOM 183 ND1 HIS A 540 49.500 399.315 15.701 1.00 47.20 ATOM 184 CD2 HIS A 540 48.024 399.259 17.314 1.00 36.56 ATOM 185 CE1 HIS A 540 48.330 399.631 15.174 1.00 48.19 ATOM 186 NE2 HIS A 540 47.418 399.593 16.131 1.00 42.84 ATOM 187 N GLU A 541 49.953 401.049 19.930 1.00 32.53 ATOM 188 CA GLU A 541 49.069 402.114 20.380 1.00 35.32 ATOM 189 C GLU A 541 49.780 403.468 20.509 1.00 36.10 ATOM 190 O GLU A 541 49.193 404.557 20.240 1.00 36.33 ATOM 191 CB GLU A 541 48.423 401.705 21.699 1.00 33.49 ATOM 192 CG GLU A 541 47.390 400.572 21.480 1.00 38.82 ATOM 193 CD GLU A 541 46.699 400.152 22.748 1.00 45.42 ATOM 194 OE1 GLU A 541 47.267 400.376 23.835 1.00 51.40 ATOM 195 OE2 GLU A 541 45.577 399.608 22.672 1.00 50.85 ATOM 196 N ILE A 542 51.054 403.395 20.909 1.00 34.39 ATOM 197 CA ILE A 542 51.887 404.600 20.881 1.00 35.37 ATOM 198 C ILE A 542 51.855 405.315 19.511 1.00 34.13 ATOM 199 O ILE A 542 51.804 406.552 19.451 1.00 35.25 ATOM 200 CB ILE A 542 53.344 404.257 21.272 1.00 43.46 ATOM 201 CG1 ILE A 542 53.489 404.312 22.791 1.00 48.11 ATOM 202 CG2 ILE A 542 54.334 405.237 20.657 1.00 46.86 ATOM 203 CD1 ILE A 542 53.490 405.718 23.336 1.00 47.45 ATOM 204 N HIS A 543 51.873 404.557 18.414 1.00 35.85 ATOM 205 CA HIS A 543 51.693 405.146 17.072 1.00 37.47 ATOM 206 C HIS A 543 50.370 405.901 16.897 1.00 43.48 ATOM 207 O HIS A 543 50.302 406.897 16.167 1.00 42.97 ATOM 208 CB HIS A 543 51.782 404.065 15.986 1.00 41.32 ATOM 209 CG HIS A 543 53.177 403.604 15.705 1.00 64.77 ATOM 210 ND1 HIS A 543 53.882 404.004 14.591 1.00 80.44 ATOM 211 CD2 HIS A 543 53.998 402.773 16.392 1.00 73.14 ATOM 212 CE1 HIS A 543 55.077 403.438 14.601 1.00 85.12 ATOM 213 NE2 HIS A 543 55.173 402.689 15.686 1.00 77.47 ATOM 214 N HIS A 544 49.306 405.410 17.522 1.00 35.57 ATOM 215 CA HIS A 544 48.036 406.132 17.488 1.00 35.03 ATOM 216 C HIS A 544 48.129 407.455 18.228 1.00 33.21 ATOM 217 O HIS A 544 47.572 408.446 17.766 1.00 40.11 ATOM 218 CB HIS A 544 46.907 405.296 18.095 1.00 40.75 ATOM 219 CG HIS A 544 46.387 404.216 17.196 1.00 40.75 ATOM 220 ND1 HIS A 544 45.675 404.488 16.049 1.00 45.42 ATOM 221 CD2 HIS A 544 46.444 402.861 17.294 1.00 34.62 ATOM 222 CE1 HIS A 544 45.307 403.351 15.478 1.00 39.03 ATOM 223 NE2 HIS A 544 45.760 402.353 16.212 1.00 37.95 ATOM 224 ZN ZN A 702 45.499 400.303 16.261 1.00 45.53 TER