HEADER TRANSCRIPTION/DNA 31-DEC-69 5VMZ TITLE Kaiso (ZBTB33) E535Q mutant zinc finger DNA binding domain in complex TITLE 2 with a double CpG-methylated DNA resembling the specific Kaiso TITLE 3 binding sequence (KBS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional regulator Kaiso; COMPND 3 CHAIN: A; COMPND 4 MUTATION: YES; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.32 ANGSTORMS DBREF 5VMZ A 471 604 UNP Q86T24 KAISO_HUMAN 471 604 SEQRES 1 A 25 LYS LYS TYR PRO CYS ARG TYR CYS GLU LYS VAL PHE PRO SEQRES 2 A 25 LEU ALA GLN TYR ARG THR LYS HIS GLU ILE HIS HIS ATOM 1 N LYS A 520 -1.056 -16.103 24.892 1.00 62.27 ATOM 2 CA LYS A 520 -0.804 -17.487 25.264 1.00 62.47 ATOM 3 C LYS A 520 -0.790 -18.368 24.033 1.00 62.37 ATOM 4 O LYS A 520 -1.589 -18.171 23.111 1.00 56.37 ATOM 5 CB LYS A 520 -1.855 -18.007 26.243 1.00 67.86 ATOM 6 CG LYS A 520 -1.754 -17.417 27.637 1.00 86.76 ATOM 7 CD LYS A 520 -2.707 -18.139 28.586 1.00 95.44 ATOM 8 CE LYS A 520 -2.849 -17.400 29.912 1.00104.11 ATOM 9 NZ LYS A 520 -3.886 -18.021 30.788 1.00101.06 ATOM 10 N LYS A 521 0.124 -19.337 24.032 1.00 62.42 ATOM 11 CA LYS A 521 0.177 -20.367 23.006 1.00 54.20 ATOM 12 C LYS A 521 -0.170 -21.730 23.591 1.00 56.35 ATOM 13 O LYS A 521 0.230 -22.050 24.720 1.00 52.48 ATOM 14 CB LYS A 521 1.565 -20.427 22.367 1.00 54.53 ATOM 15 CG LYS A 521 1.770 -19.473 21.216 1.00 59.70 ATOM 16 CD LYS A 521 2.359 -18.184 21.709 1.00 69.30 ATOM 17 CE LYS A 521 2.649 -17.230 20.572 1.00 69.10 ATOM 18 NZ LYS A 521 3.335 -16.038 21.112 1.00 77.51 ATOM 19 N TYR A 522 -0.904 -22.530 22.816 1.00 49.79 ATOM 20 CA TYR A 522 -1.168 -23.927 23.164 1.00 49.30 ATOM 21 C TYR A 522 -0.618 -24.842 22.071 1.00 48.59 ATOM 22 O TYR A 522 -1.289 -25.098 21.074 1.00 48.72 ATOM 23 CB TYR A 522 -2.672 -24.166 23.368 1.00 47.27 ATOM 24 CG TYR A 522 -3.278 -23.233 24.395 1.00 51.91 ATOM 25 CD1 TYR A 522 -3.351 -23.599 25.729 1.00 54.01 ATOM 26 CD2 TYR A 522 -3.763 -21.981 24.032 1.00 51.45 ATOM 27 CE1 TYR A 522 -3.889 -22.751 26.672 1.00 57.23 ATOM 28 CE2 TYR A 522 -4.306 -21.121 24.973 1.00 50.69 ATOM 29 CZ TYR A 522 -4.369 -21.517 26.290 1.00 52.76 ATOM 30 OH TYR A 522 -4.902 -20.682 27.242 1.00 51.81 ATOM 31 N PRO A 523 0.625 -25.309 22.236 1.00 46.88 ATOM 32 CA PRO A 523 1.228 -26.118 21.169 1.00 50.24 ATOM 33 C PRO A 523 0.855 -27.593 21.278 1.00 53.17 ATOM 34 O PRO A 523 0.889 -28.120 22.394 1.00 49.77 ATOM 35 CB PRO A 523 2.735 -25.915 21.383 1.00 48.36 ATOM 36 CG PRO A 523 2.875 -25.633 22.857 1.00 49.07 ATOM 37 CD PRO A 523 1.598 -24.914 23.273 1.00 48.70 ATOM 38 N CYS A 524 0.488 -28.229 20.159 1.00 58.20 ATOM 39 CA CYS A 524 0.217 -29.673 20.153 1.00 55.97 ATOM 40 C CYS A 524 1.458 -30.398 20.580 1.00 51.50 ATOM 41 O CYS A 524 2.540 -30.143 20.056 1.00 50.06 ATOM 42 CB CYS A 524 -0.210 -30.192 18.777 1.00 56.94 ATOM 43 SG CYS A 524 -0.384 -32.029 18.706 1.00 37.34 ATOM 44 N ARG A 525 1.319 -31.316 21.521 1.00 54.96 ATOM 45 CA ARG A 525 2.505 -32.019 22.002 1.00 67.73 ATOM 46 C ARG A 525 2.798 -33.280 21.184 1.00 61.81 ATOM 47 O ARG A 525 3.494 -34.177 21.653 1.00 73.29 ATOM 48 CB ARG A 525 2.340 -32.363 23.478 1.00 76.29 ATOM 49 CG ARG A 525 1.572 -31.294 24.250 1.00 87.32 ATOM 50 CD ARG A 525 0.636 -31.977 25.223 1.00 93.12 ATOM 51 NE ARG A 525 -0.474 -31.149 25.687 1.00 81.17 ATOM 52 CZ ARG A 525 -0.462 -30.457 26.819 1.00 84.35 ATOM 53 NH1 ARG A 525 0.610 -30.467 27.595 1.00 86.82 ATOM 54 NH2 ARG A 525 -1.527 -29.761 27.179 1.00 91.65 ATOM 55 N TYR A 526 2.281 -33.338 19.957 1.00 52.28 ATOM 56 CA TYR A 526 2.508 -34.492 19.083 1.00 52.40 ATOM 57 C TYR A 526 2.953 -34.062 17.700 1.00 55.49 ATOM 58 O TYR A 526 3.556 -34.854 16.963 1.00 62.86 ATOM 59 CB TYR A 526 1.251 -35.348 18.946 1.00 52.49 ATOM 60 CG TYR A 526 0.739 -35.893 20.244 1.00 53.22 ATOM 61 CD1 TYR A 526 1.149 -37.135 20.714 1.00 52.00 ATOM 62 CD2 TYR A 526 -0.149 -35.158 21.011 1.00 47.74 ATOM 63 CE1 TYR A 526 0.675 -37.628 21.910 1.00 48.58 ATOM 64 CE2 TYR A 526 -0.622 -35.639 22.198 1.00 47.43 ATOM 65 CZ TYR A 526 -0.219 -36.872 22.643 1.00 44.80 ATOM 66 OH TYR A 526 -0.711 -37.335 23.840 1.00 54.38 ATOM 67 N CYS A 527 2.632 -32.821 17.335 1.00 46.79 ATOM 68 CA CYS A 527 3.112 -32.280 16.075 1.00 48.52 ATOM 69 C CYS A 527 3.430 -30.787 16.237 1.00 52.96 ATOM 70 O CYS A 527 3.649 -30.302 17.350 1.00 56.20 ATOM 71 CB CYS A 527 2.098 -32.515 14.952 1.00 45.40 ATOM 72 SG CYS A 527 0.625 -31.485 15.047 1.00 52.10 ATOM 73 N GLU A 528 3.470 -30.062 15.129 1.00 54.42 ATOM 74 CA GLU A 528 3.973 -28.693 15.161 1.00 71.29 ATOM 75 C GLU A 528 2.863 -27.675 15.421 1.00 62.82 ATOM 76 O GLU A 528 3.133 -26.588 15.895 1.00 68.36 ATOM 77 CB GLU A 528 4.712 -28.369 13.851 1.00 84.82 ATOM 78 CG GLU A 528 3.820 -28.330 12.599 1.00 99.83 ATOM 79 CD GLU A 528 3.337 -29.713 12.146 1.00106.62 ATOM 80 OE1 GLU A 528 3.934 -30.732 12.559 1.00105.85 ATOM 81 OE2 GLU A 528 2.351 -29.778 11.379 1.00107.03 ATOM 82 N LYS A 529 1.618 -28.049 15.141 1.00 56.01 ATOM 83 CA LYS A 529 0.492 -27.125 15.224 1.00 53.60 ATOM 84 C LYS A 529 0.369 -26.418 16.577 1.00 53.41 ATOM 85 O LYS A 529 0.573 -27.011 17.637 1.00 48.62 ATOM 86 CB LYS A 529 -0.811 -27.857 14.904 1.00 50.62 ATOM 87 CG LYS A 529 -0.864 -28.411 13.485 1.00 57.89 ATOM 88 CD LYS A 529 -2.232 -29.010 13.165 1.00 69.24 ATOM 89 CE LYS A 529 -2.268 -29.585 11.750 1.00 80.15 ATOM 90 NZ LYS A 529 -1.171 -30.575 11.503 1.00 85.84 ATOM 91 N VAL A 530 0.049 -25.131 16.523 1.00 50.97 ATOM 92 CA VAL A 530 -0.152 -24.351 17.728 1.00 51.99 ATOM 93 C VAL A 530 -1.585 -23.805 17.736 1.00 54.57 ATOM 94 O VAL A 530 -2.120 -23.455 16.687 1.00 59.35 ATOM 95 CB VAL A 530 0.893 -23.225 17.805 1.00 61.46 ATOM 96 CG1 VAL A 530 0.662 -22.335 19.004 1.00 44.68 ATOM 97 CG2 VAL A 530 2.310 -23.839 17.841 1.00 56.35 ATOM 98 N PHE A 531 -2.217 -23.757 18.907 1.00 48.76 ATOM 99 CA PHE A 531 -3.611 -23.317 19.006 1.00 43.92 ATOM 100 C PHE A 531 -3.761 -22.155 19.968 1.00 44.03 ATOM 101 O PHE A 531 -2.998 -22.054 20.926 1.00 45.52 ATOM 102 CB PHE A 531 -4.512 -24.487 19.449 1.00 45.36 ATOM 103 CG PHE A 531 -4.461 -25.665 18.520 1.00 39.60 ATOM 104 CD1 PHE A 531 -3.490 -26.637 18.669 1.00 37.32 ATOM 105 CD2 PHE A 531 -5.374 -25.781 17.480 1.00 38.21 ATOM 106 CE1 PHE A 531 -3.439 -27.718 17.806 1.00 44.13 ATOM 107 CE2 PHE A 531 -5.330 -26.844 16.613 1.00 34.91 ATOM 108 CZ PHE A 531 -4.361 -27.824 16.773 1.00 37.29 ATOM 109 N PRO A 532 -4.752 -21.272 19.717 1.00 46.09 ATOM 110 CA PRO A 532 -5.002 -20.083 20.535 1.00 49.22 ATOM 111 C PRO A 532 -6.025 -20.290 21.667 1.00 49.79 ATOM 112 O PRO A 532 -6.213 -19.389 22.492 1.00 51.64 ATOM 113 CB PRO A 532 -5.531 -19.082 19.508 1.00 51.11 ATOM 114 CG PRO A 532 -6.302 -19.920 18.572 1.00 44.15 ATOM 115 CD PRO A 532 -5.561 -21.246 18.485 1.00 43.31 ATOM 116 N LEU A 533 -6.676 -21.449 21.695 1.00 42.07 ATOM 117 CA LEU A 533 -7.523 -21.849 22.819 1.00 43.66 ATOM 118 C LEU A 533 -7.086 -23.210 23.359 1.00 46.39 ATOM 119 O LEU A 533 -6.754 -24.121 22.593 1.00 38.02 ATOM 120 CB LEU A 533 -8.997 -21.933 22.410 1.00 43.29 ATOM 121 CG LEU A 533 -9.927 -20.777 22.760 1.00 48.96 ATOM 122 CD1 LEU A 533 -9.549 -19.587 21.944 1.00 40.06 ATOM 123 CD2 LEU A 533 -11.382 -21.160 22.503 1.00 42.54 ATOM 124 N ALA A 534 -7.126 -23.366 24.676 1.00 46.41 ATOM 125 CA ALA A 534 -6.776 -24.642 25.281 1.00 39.33 ATOM 126 C ALA A 534 -7.618 -25.780 24.703 1.00 40.86 ATOM 127 O ALA A 534 -7.087 -26.857 24.393 1.00 42.89 ATOM 128 CB ALA A 534 -6.940 -24.572 26.790 1.00 41.32 ATOM 129 N GLN A 535 -8.920 -25.546 24.520 1.00 29.83 ATOM 130 CA GLN A 535 -9.782 -26.654 24.122 1.00 33.62 ATOM 131 C GLN A 535 -9.538 -27.033 22.663 1.00 34.69 ATOM 132 O GLN A 535 -9.717 -28.183 22.301 1.00 39.44 ATOM 133 CB GLN A 535 -11.265 -26.335 24.374 1.00 30.21 ATOM 134 CG GLN A 535 -11.891 -25.418 23.359 1.00 35.83 ATOM 135 CD GLN A 535 -13.389 -25.312 23.530 1.00 37.18 ATOM 136 OE1 GLN A 535 -13.867 -24.746 24.513 1.00 33.22 ATOM 137 NE2 GLN A 535 -14.145 -25.855 22.565 1.00 31.17 ATOM 138 N TYR A 536 -9.101 -26.096 21.823 1.00 29.07 ATOM 139 CA TYR A 536 -8.840 -26.471 20.434 1.00 28.71 ATOM 140 C TYR A 536 -7.672 -27.450 20.386 1.00 35.20 ATOM 141 O TYR A 536 -7.690 -28.414 19.625 1.00 41.43 ATOM 142 CB TYR A 536 -8.549 -25.254 19.544 1.00 30.23 ATOM 143 CG TYR A 536 -9.694 -24.266 19.379 1.00 32.63 ATOM 144 CD1 TYR A 536 -10.958 -24.516 19.905 1.00 35.57 ATOM 145 CD2 TYR A 536 -9.502 -23.079 18.688 1.00 35.42 ATOM 146 CE1 TYR A 536 -11.993 -23.591 19.758 1.00 34.54 ATOM 147 CE2 TYR A 536 -10.518 -22.162 18.532 1.00 38.04 ATOM 148 CZ TYR A 536 -11.760 -22.411 19.074 1.00 41.35 ATOM 149 OH TYR A 536 -12.766 -21.469 18.897 1.00 45.59 ATOM 150 N ARG A 537 -6.662 -27.216 21.216 1.00 35.66 ATOM 151 CA ARG A 537 -5.537 -28.125 21.262 1.00 40.41 ATOM 152 C ARG A 537 -5.960 -29.503 21.781 1.00 38.40 ATOM 153 O ARG A 537 -5.600 -30.530 21.205 1.00 38.46 ATOM 154 CB ARG A 537 -4.405 -27.572 22.125 1.00 36.63 ATOM 155 CG ARG A 537 -3.362 -28.645 22.379 1.00 45.35 ATOM 156 CD ARG A 537 -2.205 -28.154 23.177 1.00 46.03 ATOM 157 NE ARG A 537 -2.603 -27.766 24.521 1.00 52.00 ATOM 158 CZ ARG A 537 -1.741 -27.367 25.447 1.00 45.85 ATOM 159 NH1 ARG A 537 -0.449 -27.338 25.165 1.00 50.06 ATOM 160 NH2 ARG A 537 -2.162 -27.023 26.657 1.00 49.07 ATOM 161 N THR A 538 -6.711 -29.509 22.875 1.00 36.55 ATOM 162 CA THR A 538 -7.190 -30.743 23.479 1.00 37.48 ATOM 163 C THR A 538 -7.936 -31.598 22.476 1.00 40.44 ATOM 164 O THR A 538 -7.671 -32.788 22.346 1.00 38.44 ATOM 165 CB THR A 538 -8.123 -30.468 24.662 1.00 38.70 ATOM 166 OG1 THR A 538 -7.394 -29.802 25.697 1.00 31.84 ATOM 167 CG2 THR A 538 -8.694 -31.775 25.213 1.00 30.20 ATOM 168 N LYS A 539 -8.868 -30.992 21.757 1.00 34.19 ATOM 169 CA LYS A 539 -9.631 -31.743 20.772 1.00 30.31 ATOM 170 C LYS A 539 -8.727 -32.273 19.672 1.00 36.88 ATOM 171 O LYS A 539 -8.898 -33.391 19.201 1.00 37.22 ATOM 172 CB LYS A 539 -10.738 -30.878 20.183 1.00 28.70 ATOM 173 CG LYS A 539 -11.685 -30.322 21.235 1.00 31.91 ATOM 174 CD LYS A 539 -12.180 -31.385 22.187 1.00 41.80 ATOM 175 CE LYS A 539 -13.240 -30.816 23.122 1.00 40.81 ATOM 176 NZ LYS A 539 -13.810 -31.844 24.042 1.00 39.50 ATOM 177 N HIS A 540 -7.766 -31.457 19.261 1.00 34.47 ATOM 178 CA HIS A 540 -6.796 -31.862 18.259 1.00 32.54 ATOM 179 C HIS A 540 -5.941 -33.035 18.731 1.00 38.44 ATOM 180 O HIS A 540 -5.684 -33.971 17.977 1.00 39.57 ATOM 181 CB HIS A 540 -5.890 -30.694 17.902 1.00 34.14 ATOM 182 CG HIS A 540 -4.686 -31.091 17.109 1.00 33.17 ATOM 183 ND1 HIS A 540 -4.757 -31.414 15.772 1.00 36.54 ATOM 184 CD2 HIS A 540 -3.382 -31.209 17.457 1.00 33.03 ATOM 185 CE1 HIS A 540 -3.549 -31.710 15.328 1.00 39.19 ATOM 186 NE2 HIS A 540 -2.696 -31.588 16.329 1.00 46.81 ATOM 187 N GLU A 541 -5.494 -32.985 19.979 1.00 32.73 ATOM 188 CA GLU A 541 -4.670 -34.067 20.503 1.00 37.29 ATOM 189 C GLU A 541 -5.431 -35.378 20.646 1.00 39.25 ATOM 190 O GLU A 541 -4.844 -36.449 20.506 1.00 40.80 ATOM 191 CB GLU A 541 -4.054 -33.661 21.836 1.00 35.69 ATOM 192 CG GLU A 541 -3.061 -32.511 21.679 1.00 33.58 ATOM 193 CD GLU A 541 -2.337 -32.204 22.956 1.00 38.54 ATOM 194 OE1 GLU A 541 -2.911 -32.471 24.032 1.00 47.13 ATOM 195 OE2 GLU A 541 -1.205 -31.689 22.880 1.00 44.12 ATOM 196 N ILE A 542 -6.733 -35.305 20.896 1.00 35.62 ATOM 197 CA ILE A 542 -7.531 -36.521 20.970 1.00 32.23 ATOM 198 C ILE A 542 -7.455 -37.274 19.639 1.00 36.29 ATOM 199 O ILE A 542 -7.375 -38.502 19.610 1.00 41.35 ATOM 200 CB ILE A 542 -8.994 -36.211 21.346 1.00 40.83 ATOM 201 CG1 ILE A 542 -9.119 -36.156 22.865 1.00 35.00 ATOM 202 CG2 ILE A 542 -9.935 -37.289 20.817 1.00 36.95 ATOM 203 CD1 ILE A 542 -8.873 -37.522 23.520 1.00 37.35 ATOM 204 N HIS A 543 -7.440 -36.525 18.540 1.00 37.10 ATOM 205 CA HIS A 543 -7.233 -37.102 17.214 1.00 34.83 ATOM 206 C HIS A 543 -5.906 -37.827 17.077 1.00 41.76 ATOM 207 O HIS A 543 -5.817 -38.780 16.317 1.00 40.83 ATOM 208 CB HIS A 543 -7.307 -36.020 16.136 1.00 31.22 ATOM 209 CG HIS A 543 -8.704 -35.581 15.825 1.00 50.24 ATOM 210 ND1 HIS A 543 -9.337 -34.566 16.511 1.00 58.41 ATOM 211 CD2 HIS A 543 -9.592 -36.022 14.905 1.00 52.92 ATOM 212 CE1 HIS A 543 -10.556 -34.405 16.029 1.00 57.06 ATOM 213 NE2 HIS A 543 -10.734 -35.274 15.052 1.00 58.32 ATOM 214 N HIS A 544 -4.861 -37.353 17.758 1.00 36.15 ATOM 215 CA HIS A 544 -3.577 -38.056 17.712 1.00 37.65 ATOM 216 C HIS A 544 -3.670 -39.423 18.422 1.00 38.17 ATOM 217 O HIS A 544 -3.094 -40.408 17.959 1.00 46.86 ATOM 218 CB HIS A 544 -2.458 -37.223 18.352 1.00 36.69 ATOM 219 CG HIS A 544 -1.858 -36.175 17.455 1.00 53.48 ATOM 220 ND1 HIS A 544 -1.013 -36.480 16.411 1.00 52.53 ATOM 221 CD2 HIS A 544 -1.951 -34.821 17.475 1.00 36.40 ATOM 222 CE1 HIS A 544 -0.621 -35.365 15.817 1.00 40.90 ATOM 223 NE2 HIS A 544 -1.168 -34.345 16.447 1.00 48.06 ATOM 224 ZN ZN A 702 -0.862 -32.319 16.579 1.00 46.02 ATOM 225 O1 TLA A 705 -15.669 -29.704 18.302 1.00 33.54 ATOM 226 O11 TLA A 705 -15.237 -28.971 20.352 1.00 33.50 ATOM 227 C1 TLA A 705 -15.357 -29.907 19.506 1.00 38.11 ATOM 228 C2 TLA A 705 -15.130 -31.328 19.925 1.00 40.96 ATOM 229 O2 TLA A 705 -15.404 -32.130 18.797 1.00 36.02 ATOM 230 C3 TLA A 705 -16.078 -31.593 21.070 1.00 48.66 ATOM 231 O3 TLA A 705 -17.408 -31.284 20.682 1.00 50.03 ATOM 232 C4 TLA A 705 -15.968 -33.034 21.547 1.00 49.21 ATOM 233 O4 TLA A 705 -17.011 -33.741 21.527 1.00 38.79 ATOM 234 O41 TLA A 705 -14.862 -33.510 21.970 1.00 40.04 TER