HEADER IMMUNE SYSTEM 31-DEC-69 5VN3 TITLE Cryo-EM model of B41 SOSIP.664 in complex with soluble CD4 (D1-D2) TITLE 2 and fragment antigen binding variable domain of 17b COMPND MOL_ID: 3; COMPND 2 MOLECULE: Envelope glycoprotein gp160; COMPND 3 CHAIN: G, I, J; COMPND 4 MUTATION: YES; COMPND 5 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 5VN3 J 31 505 UNP B3UES2 B3UES2_9HIV 29 509 SEQRES 1 J 12 VAL LYS LEU THR PRO LEU CYS VAL THR LEU ASN CYS SEQRES 1 J 10 LEU ILE ASN CYS ASN THR SER VAL ILE THR ATOM 1 N VAL J 120 130.705 175.057 179.594 1.00 92.53 ATOM 2 CA VAL J 120 129.469 174.726 178.906 1.00 92.53 ATOM 3 C VAL J 120 129.538 175.418 177.559 1.00 92.53 ATOM 4 O VAL J 120 129.558 176.651 177.495 1.00 92.53 ATOM 5 CB VAL J 120 128.223 175.184 179.679 1.00 92.53 ATOM 6 CG1 VAL J 120 127.001 175.014 178.826 1.00 92.53 ATOM 7 CG2 VAL J 120 128.063 174.389 180.942 1.00 92.53 ATOM 8 N LYS J 121 129.595 174.646 176.489 1.00 89.60 ATOM 9 CA LYS J 121 129.677 175.213 175.152 1.00 89.60 ATOM 10 C LYS J 121 128.323 175.026 174.484 1.00 89.60 ATOM 11 O LYS J 121 128.078 174.032 173.804 1.00 89.60 ATOM 12 CB LYS J 121 130.777 174.574 174.352 1.00 89.60 ATOM 13 CG LYS J 121 131.018 175.279 173.052 1.00 89.60 ATOM 14 CD LYS J 121 132.181 174.695 172.308 1.00 89.60 ATOM 15 CE LYS J 121 132.376 175.423 171.001 1.00 89.60 ATOM 16 NZ LYS J 121 133.516 174.874 170.232 1.00 89.60 ATOM 17 N LEU J 122 127.443 175.994 174.683 1.00 94.59 ATOM 18 CA LEU J 122 126.114 175.942 174.099 1.00 94.59 ATOM 19 C LEU J 122 126.184 176.441 172.663 1.00 94.59 ATOM 20 O LEU J 122 126.463 177.617 172.423 1.00 94.59 ATOM 21 CB LEU J 122 125.152 176.781 174.930 1.00 94.59 ATOM 22 CG LEU J 122 123.665 176.706 174.625 1.00 94.59 ATOM 23 CD1 LEU J 122 122.935 176.802 175.926 1.00 94.59 ATOM 24 CD2 LEU J 122 123.215 177.840 173.729 1.00 94.59 ATOM 25 N THR J 123 125.922 175.552 171.710 1.00103.23 ATOM 26 CA THR J 123 125.963 175.908 170.304 1.00103.23 ATOM 27 C THR J 123 124.722 175.425 169.569 1.00103.23 ATOM 28 O THR J 123 124.188 174.358 169.895 1.00103.23 ATOM 29 CB THR J 123 127.226 175.344 169.645 1.00103.23 ATOM 30 OG1 THR J 123 127.186 175.593 168.238 1.00103.23 ATOM 31 CG2 THR J 123 127.387 173.864 169.917 1.00103.23 ATOM 32 N PRO J 124 124.230 176.184 168.596 1.00106.92 ATOM 33 CA PRO J 124 123.032 175.766 167.869 1.00106.92 ATOM 34 C PRO J 124 123.317 174.654 166.879 1.00106.92 ATOM 35 O PRO J 124 124.445 174.451 166.430 1.00106.92 ATOM 36 CB PRO J 124 122.602 177.039 167.135 1.00106.92 ATOM 37 CG PRO J 124 123.222 178.130 167.890 1.00106.92 ATOM 38 CD PRO J 124 124.533 177.598 168.349 1.00106.92 ATOM 39 N LEU J 125 122.251 173.931 166.542 1.00126.40 ATOM 40 CA LEU J 125 122.325 172.819 165.597 1.00126.40 ATOM 41 C LEU J 125 120.927 172.586 165.045 1.00126.40 ATOM 42 O LEU J 125 120.024 172.206 165.795 1.00126.40 ATOM 43 CB LEU J 125 122.858 171.564 166.264 1.00126.40 ATOM 44 CG LEU J 125 122.931 170.367 165.328 1.00126.40 ATOM 45 CD1 LEU J 125 123.868 170.666 164.181 1.00126.40 ATOM 46 CD2 LEU J 125 123.382 169.136 166.085 1.00126.40 ATOM 47 N CYS J 126 120.749 172.814 163.751 1.00141.77 ATOM 48 CA CYS J 126 119.453 172.638 163.118 1.00141.77 ATOM 49 C CYS J 126 119.383 171.328 162.346 1.00141.77 ATOM 50 O CYS J 126 120.395 170.692 162.046 1.00141.77 ATOM 51 CB CYS J 126 119.138 173.809 162.188 1.00141.77 ATOM 52 SG CYS J 126 118.785 175.342 163.052 1.00141.77 ATOM 53 N VAL J 127 118.151 170.935 162.031 1.00148.37 ATOM 54 CA VAL J 127 117.847 169.716 161.294 1.00148.37 ATOM 55 C VAL J 127 117.260 170.139 159.952 1.00148.37 ATOM 56 O VAL J 127 116.538 171.140 159.873 1.00148.37 ATOM 57 CB VAL J 127 116.878 168.814 162.093 1.00148.37 ATOM 58 CG1 VAL J 127 116.580 167.499 161.379 1.00148.37 ATOM 59 CG2 VAL J 127 117.438 168.532 163.476 1.00148.37 ATOM 60 N THR J 128 117.575 169.386 158.898 1.00152.32 ATOM 61 CA THR J 128 117.105 169.683 157.546 1.00152.32 ATOM 62 C THR J 128 115.611 169.396 157.424 1.00152.32 ATOM 63 O THR J 128 115.177 168.332 156.976 1.00152.32 ATOM 64 CB THR J 128 117.896 168.875 156.527 1.00152.32 ATOM 65 OG1 THR J 128 117.711 167.478 156.783 1.00152.32 ATOM 66 CG2 THR J 128 119.372 169.208 156.624 1.00152.32 ATOM 67 N LEU J 129 114.812 170.380 157.827 1.00153.71 ATOM 68 CA LEU J 129 113.360 170.317 157.750 1.00153.71 ATOM 69 C LEU J 129 112.872 171.648 157.206 1.00153.71 ATOM 70 O LEU J 129 113.124 172.699 157.803 1.00153.71 ATOM 71 CB LEU J 129 112.713 170.023 159.102 1.00153.71 ATOM 72 CG LEU J 129 112.951 168.627 159.677 1.00153.71 ATOM 73 CD1 LEU J 129 112.268 168.499 161.030 1.00153.71 ATOM 74 CD2 LEU J 129 112.485 167.537 158.718 1.00153.71 ATOM 75 N ASN J 130 112.186 171.594 156.071 1.00155.56 ATOM 76 CA ASN J 130 111.679 172.781 155.401 1.00155.56 ATOM 77 C ASN J 130 110.601 173.490 156.216 1.00155.56 ATOM 78 O ASN J 130 109.962 172.898 157.091 1.00155.56 ATOM 79 CB ASN J 130 111.144 172.390 154.027 1.00155.56 ATOM 80 CG ASN J 130 110.198 171.201 154.086 1.00155.56 ATOM 81 OD1 ASN J 130 109.915 170.665 155.158 1.00155.56 ATOM 82 ND2 ASN J 130 109.702 170.784 152.928 1.00155.56 ATOM 83 N CYS J 131 110.412 174.770 155.913 1.00154.83 ATOM 84 CA CYS J 131 109.422 175.616 156.564 1.00154.83 ATOM 85 C CYS J 131 109.098 176.799 155.671 1.00154.83 ATOM 86 O CYS J 131 109.918 177.702 155.517 1.00154.83 ATOM 87 CB CYS J 131 109.924 176.113 157.912 1.00154.83 ATOM 88 SG CYS J 131 108.770 177.187 158.778 1.00154.83 TER ATOM 1 N LEU J 193 108.081 174.825 161.296 1.00150.82 ATOM 2 CA LEU J 193 108.827 174.639 162.532 1.00150.82 ATOM 3 C LEU J 193 110.066 173.793 162.277 1.00150.82 ATOM 4 O LEU J 193 109.992 172.567 162.274 1.00150.82 ATOM 5 CB LEU J 193 107.942 173.983 163.597 1.00150.82 ATOM 6 CG LEU J 193 108.501 173.763 165.008 1.00150.82 ATOM 7 CD1 LEU J 193 108.832 175.083 165.684 1.00150.82 ATOM 8 CD2 LEU J 193 107.521 172.961 165.853 1.00150.82 ATOM 9 N ILE J 194 111.203 174.444 162.057 1.00149.84 ATOM 10 CA ILE J 194 112.446 173.724 161.805 1.00149.84 ATOM 11 C ILE J 194 112.994 173.235 163.135 1.00149.84 ATOM 12 O ILE J 194 113.008 173.974 164.125 1.00149.84 ATOM 13 CB ILE J 194 113.471 174.620 161.091 1.00149.84 ATOM 14 CG1 ILE J 194 112.867 175.251 159.849 1.00149.84 ATOM 15 CG2 ILE J 194 114.676 173.806 160.647 1.00149.84 ATOM 16 CD1 ILE J 194 113.715 176.347 159.257 1.00149.84 ATOM 17 N ASN J 195 113.444 171.988 163.167 1.00147.07 ATOM 18 CA ASN J 195 114.007 171.436 164.389 1.00147.07 ATOM 19 C ASN J 195 115.407 172.006 164.569 1.00147.07 ATOM 20 O ASN J 195 116.331 171.651 163.833 1.00147.07 ATOM 21 CB ASN J 195 114.033 169.914 164.325 1.00147.07 ATOM 22 CG ASN J 195 114.292 169.277 165.677 1.00147.07 ATOM 23 OD1 ASN J 195 114.428 169.965 166.688 1.00147.07 ATOM 24 ND2 ASN J 195 114.361 167.952 165.701 1.00147.07 ATOM 25 N CYS J 196 115.566 172.903 165.541 1.00141.64 ATOM 26 CA CYS J 196 116.850 173.531 165.850 1.00141.64 ATOM 27 C CYS J 196 117.055 173.433 167.358 1.00141.64 ATOM 28 O CYS J 196 116.738 174.365 168.100 1.00141.64 ATOM 29 CB CYS J 196 116.888 174.970 165.370 1.00141.64 ATOM 30 SG CYS J 196 116.834 175.149 163.585 1.00141.64 ATOM 31 N ASN J 197 117.588 172.305 167.807 1.00130.61 ATOM 32 CA ASN J 197 117.844 172.081 169.219 1.00130.61 ATOM 33 C ASN J 197 119.318 172.306 169.509 1.00130.61 ATOM 34 O ASN J 197 120.186 171.941 168.714 1.00130.61 ATOM 35 CB ASN J 197 117.439 170.668 169.642 1.00130.61 ATOM 36 CG ASN J 197 115.936 170.458 169.616 1.00130.61 ATOM 37 OD1 ASN J 197 115.168 171.365 169.931 1.00130.61 ATOM 38 ND2 ASN J 197 115.512 169.248 169.270 1.00130.61 ATOM 39 N THR J 198 119.591 172.915 170.657 1.00117.92 ATOM 40 CA THR J 198 120.959 173.192 171.050 1.00117.92 ATOM 41 C THR J 198 121.667 171.904 171.440 1.00117.92 ATOM 42 O THR J 198 121.040 170.904 171.791 1.00117.92 ATOM 43 CB THR J 198 120.988 174.164 172.219 1.00117.92 ATOM 44 OG1 THR J 198 120.402 173.537 173.363 1.00117.92 ATOM 45 CG2 THR J 198 120.182 175.396 171.886 1.00117.92 ATOM 46 N SER J 199 122.991 171.934 171.374 1.00108.06 ATOM 47 CA SER J 199 123.813 170.779 171.722 1.00108.06 ATOM 48 C SER J 199 124.928 171.294 172.619 1.00108.06 ATOM 49 O SER J 199 125.860 171.945 172.143 1.00108.06 ATOM 50 CB SER J 199 124.370 170.096 170.482 1.00108.06 ATOM 51 OG SER J 199 125.301 170.934 169.831 1.00108.06 ATOM 52 N VAL J 200 124.828 171.011 173.904 1.00 97.90 ATOM 53 CA VAL J 200 125.811 171.480 174.868 1.00 97.90 ATOM 54 C VAL J 200 126.900 170.442 175.061 1.00 97.90 ATOM 55 O VAL J 200 126.707 169.247 174.820 1.00 97.90 ATOM 56 CB VAL J 200 125.126 171.832 176.198 1.00 97.90 ATOM 57 CG1 VAL J 200 124.052 172.853 175.933 1.00 97.90 ATOM 58 CG2 VAL J 200 124.542 170.604 176.841 1.00 97.90 ATOM 59 N ILE J 201 128.067 170.916 175.477 1.00 93.56 ATOM 60 CA ILE J 201 129.236 170.088 175.731 1.00 93.56 ATOM 61 C ILE J 201 129.825 170.546 177.052 1.00 93.56 ATOM 62 O ILE J 201 130.017 171.747 177.260 1.00 93.56 ATOM 63 CB ILE J 201 130.278 170.201 174.603 1.00 93.56 ATOM 64 CG1 ILE J 201 129.756 169.585 173.311 1.00 93.56 ATOM 65 CG2 ILE J 201 131.581 169.533 174.979 1.00 93.56 ATOM 66 CD1 ILE J 201 130.648 169.841 172.124 1.00 93.56 ATOM 67 N THR J 202 130.103 169.603 177.944 1.00 92.45 ATOM 68 CA THR J 202 130.673 169.912 179.247 1.00 92.45 ATOM 69 C THR J 202 132.110 169.414 179.279 1.00 92.45 ATOM 70 O THR J 202 132.359 168.219 179.100 1.00 92.45 ATOM 71 CB THR J 202 129.853 169.278 180.361 1.00 92.45 ATOM 72 OG1 THR J 202 128.481 169.655 180.209 1.00 92.45 ATOM 73 CG2 THR J 202 130.336 169.787 181.685 1.00 92.45 TER