HEADER TRANSFERASE 31-DEC-69 5VNZ TITLE Structure of a TRAF6-Ubc13~Ub complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF receptor-associated factor 6; COMPND 3 CHAIN: A, D; COMPND 4 EC: 2.3.2.27; COMPND 5 FRAGMENT: residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.41 ANGSTORMS DBREF 5VNZ A 50 167 PDB 5VNZ 5VNZ 50 167 SEQRES 1 A 30 LEU THR VAL LYS CYS SER ASN PHE GLY CYS SER GLU LYS SEQRES 2 A 30 MET GLU LEU ARG GLN LEU GLU LYS HIS LEU SER GLN CYS SEQRES 3 A 30 ARG PHE ALA LEU ATOM 1 N LEU A 131 8.912 48.398 -31.335 1.00119.89 ATOM 2 CA LEU A 131 9.230 49.560 -30.491 1.00121.22 ATOM 3 C LEU A 131 10.509 50.238 -30.977 1.00119.66 ATOM 4 O LEU A 131 11.473 49.556 -31.332 1.00120.94 ATOM 5 CB LEU A 131 9.415 49.146 -29.022 1.00122.89 ATOM 6 CG LEU A 131 8.227 48.539 -28.272 1.00123.07 ATOM 7 CD1 LEU A 131 8.668 48.015 -26.913 1.00122.30 ATOM 8 CD2 LEU A 131 7.095 49.543 -28.120 1.00124.17 ATOM 9 N THR A 132 10.517 51.571 -30.980 1.00119.23 ATOM 10 CA THR A 132 11.675 52.334 -31.455 1.00119.68 ATOM 11 C THR A 132 12.783 52.385 -30.395 1.00117.01 ATOM 12 O THR A 132 12.505 52.518 -29.200 1.00113.72 ATOM 13 CB THR A 132 11.286 53.765 -31.890 1.00120.40 ATOM 14 OG1 THR A 132 10.415 54.353 -30.917 1.00123.09 ATOM 15 CG2 THR A 132 10.581 53.740 -33.243 1.00120.29 ATOM 16 N VAL A 133 14.032 52.274 -30.856 1.00117.51 ATOM 17 CA VAL A 133 15.222 52.237 -29.992 1.00118.92 ATOM 18 C VAL A 133 16.332 53.127 -30.552 1.00123.45 ATOM 19 O VAL A 133 16.339 53.437 -31.743 1.00125.70 ATOM 20 CB VAL A 133 15.774 50.797 -29.820 1.00115.39 ATOM 21 CG1 VAL A 133 14.770 49.920 -29.096 1.00115.61 ATOM 22 CG2 VAL A 133 16.154 50.164 -31.154 1.00113.86 ATOM 23 N LYS A 134 17.267 53.515 -29.685 1.00127.97 ATOM 24 CA LYS A 134 18.454 54.287 -30.083 1.00128.92 ATOM 25 C LYS A 134 19.636 53.359 -30.335 1.00130.07 ATOM 26 O LYS A 134 19.684 52.241 -29.807 1.00130.87 ATOM 27 CB LYS A 134 18.826 55.325 -29.014 1.00129.77 ATOM 28 CG LYS A 134 18.196 56.691 -29.238 1.00132.53 ATOM 29 CD LYS A 134 18.595 57.686 -28.157 1.00132.89 ATOM 30 CE LYS A 134 17.805 57.479 -26.874 1.00132.12 ATOM 31 NZ LYS A 134 18.097 58.539 -25.870 1.00132.49 ATOM 32 N CYS A 135 20.589 53.836 -31.136 1.00131.60 ATOM 33 CA CYS A 135 21.813 53.086 -31.428 1.00133.90 ATOM 34 C CYS A 135 22.654 52.969 -30.153 1.00135.71 ATOM 35 O CYS A 135 22.936 53.975 -29.498 1.00138.84 ATOM 36 CB CYS A 135 22.624 53.779 -32.531 1.00134.26 ATOM 37 SG CYS A 135 23.996 52.817 -33.198 1.00131.03 ATOM 38 N SER A 136 23.039 51.742 -29.807 1.00135.53 ATOM 39 CA SER A 136 23.779 51.473 -28.567 1.00137.32 ATOM 40 C SER A 136 25.239 51.949 -28.589 1.00136.84 ATOM 41 O SER A 136 25.850 52.105 -27.530 1.00139.63 ATOM 42 CB SER A 136 23.733 49.978 -28.237 1.00138.33 ATOM 43 OG SER A 136 24.270 49.206 -29.295 1.00140.35 ATOM 44 N ASN A 137 25.789 52.174 -29.784 1.00134.71 ATOM 45 CA ASN A 137 27.174 52.626 -29.947 1.00133.39 ATOM 46 C ASN A 137 27.367 54.068 -29.471 1.00134.55 ATOM 47 O ASN A 137 26.492 54.919 -29.656 1.00127.87 ATOM 48 CB ASN A 137 27.613 52.500 -31.408 1.00132.76 ATOM 49 CG ASN A 137 27.693 51.058 -31.869 1.00133.84 ATOM 50 OD1 ASN A 137 28.465 50.269 -31.328 1.00133.06 ATOM 51 ND2 ASN A 137 26.914 50.710 -32.887 1.00139.55 ATOM 52 N PHE A 138 28.532 54.324 -28.879 1.00140.68 ATOM 53 CA PHE A 138 28.841 55.610 -28.248 1.00143.40 ATOM 54 C PHE A 138 29.086 56.674 -29.320 1.00137.48 ATOM 55 O PHE A 138 30.086 56.612 -30.037 1.00137.68 ATOM 56 CB PHE A 138 30.077 55.495 -27.333 1.00152.52 ATOM 57 CG PHE A 138 29.799 54.870 -25.982 1.00161.34 ATOM 58 CD1 PHE A 138 29.346 53.552 -25.876 1.00163.34 ATOM 59 CD2 PHE A 138 30.020 55.592 -24.803 1.00164.94 ATOM 60 CE1 PHE A 138 29.101 52.979 -24.632 1.00165.29 ATOM 61 CE2 PHE A 138 29.777 55.021 -23.560 1.00165.43 ATOM 62 CZ PHE A 138 29.317 53.713 -23.474 1.00166.03 ATOM 63 N GLY A 139 28.167 57.633 -29.428 1.00133.65 ATOM 64 CA GLY A 139 28.267 58.720 -30.407 1.00133.08 ATOM 65 C GLY A 139 27.143 58.756 -31.427 1.00132.96 ATOM 66 O GLY A 139 26.751 59.840 -31.869 1.00130.82 ATOM 67 N CYS A 140 26.628 57.584 -31.803 1.00135.70 ATOM 68 CA CYS A 140 25.567 57.481 -32.816 1.00138.26 ATOM 69 C CYS A 140 24.223 57.993 -32.286 1.00142.11 ATOM 70 O CYS A 140 23.817 57.644 -31.175 1.00147.91 ATOM 71 CB CYS A 140 25.419 56.028 -33.292 1.00136.06 ATOM 72 SG CYS A 140 24.258 55.793 -34.658 1.00128.69 ATOM 73 N SER A 141 23.546 58.812 -33.092 1.00142.92 ATOM 74 CA SER A 141 22.289 59.465 -32.707 1.00145.53 ATOM 75 C SER A 141 21.036 58.880 -33.373 1.00147.55 ATOM 76 O SER A 141 19.922 59.283 -33.040 1.00148.20 ATOM 77 CB SER A 141 22.377 60.957 -33.039 1.00147.19 ATOM 78 OG SER A 141 22.590 61.159 -34.427 1.00147.72 ATOM 79 N GLU A 142 21.213 57.934 -34.297 1.00151.18 ATOM 80 CA GLU A 142 20.111 57.436 -35.133 1.00152.88 ATOM 81 C GLU A 142 19.168 56.500 -34.373 1.00149.21 ATOM 82 O GLU A 142 19.574 55.836 -33.413 1.00145.01 ATOM 83 CB GLU A 142 20.656 56.733 -36.382 1.00157.94 ATOM 84 CG GLU A 142 21.447 57.656 -37.307 1.00162.88 ATOM 85 CD GLU A 142 22.114 56.926 -38.458 1.00165.51 ATOM 86 OE1 GLU A 142 21.503 55.975 -38.987 1.00170.51 ATOM 87 OE2 GLU A 142 23.243 57.313 -38.844 1.00162.45 ATOM 88 N LYS A 143 17.911 56.465 -34.821 1.00145.92 ATOM 89 CA LYS A 143 16.848 55.672 -34.195 1.00142.67 ATOM 90 C LYS A 143 16.168 54.754 -35.211 1.00138.45 ATOM 91 O LYS A 143 16.185 55.017 -36.415 1.00137.78 ATOM 92 CB LYS A 143 15.810 56.589 -33.549 1.00144.09 ATOM 93 CG LYS A 143 16.380 57.487 -32.464 1.00146.24 ATOM 94 CD LYS A 143 15.318 58.374 -31.842 1.00149.12 ATOM 95 CE LYS A 143 15.951 59.414 -30.932 1.00152.08 ATOM 96 NZ LYS A 143 14.935 60.255 -30.241 1.00154.79 ATOM 97 N MET A 144 15.563 53.682 -34.706 1.00134.91 ATOM 98 CA MET A 144 15.000 52.619 -35.544 1.00134.32 ATOM 99 C MET A 144 14.120 51.687 -34.719 1.00129.79 ATOM 100 O MET A 144 14.135 51.751 -33.492 1.00132.81 ATOM 101 CB MET A 144 16.132 51.801 -36.167 1.00138.49 ATOM 102 CG MET A 144 16.977 51.031 -35.154 1.00141.23 ATOM 103 SD MET A 144 18.757 51.098 -35.468 1.00144.15 ATOM 104 CE MET A 144 19.083 52.822 -35.095 1.00144.90 ATOM 105 N GLU A 145 13.384 50.807 -35.394 1.00125.00 ATOM 106 CA GLU A 145 12.671 49.720 -34.717 1.00124.58 ATOM 107 C GLU A 145 13.677 48.677 -34.232 1.00121.86 ATOM 108 O GLU A 145 14.722 48.491 -34.853 1.00122.47 ATOM 109 CB GLU A 145 11.657 49.056 -35.650 1.00127.50 ATOM 110 CG GLU A 145 10.541 49.975 -36.123 1.00127.94 ATOM 111 CD GLU A 145 9.415 49.235 -36.828 1.00127.01 ATOM 112 OE1 GLU A 145 9.620 48.082 -37.270 1.00123.12 ATOM 113 OE2 GLU A 145 8.314 49.813 -36.941 1.00129.28 ATOM 114 N LEU A 146 13.353 47.998 -33.133 1.00119.64 ATOM 115 CA LEU A 146 14.235 46.978 -32.538 1.00120.16 ATOM 116 C LEU A 146 14.617 45.863 -33.519 1.00124.64 ATOM 117 O LEU A 146 15.751 45.381 -33.498 1.00126.41 ATOM 118 CB LEU A 146 13.581 46.369 -31.293 1.00118.00 ATOM 119 CG LEU A 146 14.312 45.233 -30.565 1.00116.39 ATOM 120 CD1 LEU A 146 15.676 45.680 -30.063 1.00116.56 ATOM 121 CD2 LEU A 146 13.455 44.726 -29.417 1.00116.47 ATOM 122 N ARG A 147 13.664 45.457 -34.357 1.00129.30 ATOM 123 CA ARG A 147 13.895 44.452 -35.407 1.00134.30 ATOM 124 C ARG A 147 15.010 44.832 -36.394 1.00137.14 ATOM 125 O ARG A 147 15.741 43.966 -36.869 1.00142.29 ATOM 126 CB ARG A 147 12.590 44.149 -36.166 1.00139.50 ATOM 127 CG ARG A 147 11.945 45.326 -36.902 1.00143.41 ATOM 128 CD ARG A 147 10.681 44.922 -37.645 1.00145.77 ATOM 129 NE ARG A 147 9.582 44.551 -36.743 1.00146.87 ATOM 130 CZ ARG A 147 9.299 43.315 -36.312 1.00147.48 ATOM 131 NH1 ARG A 147 10.031 42.257 -36.675 1.00146.46 ATOM 132 NH2 ARG A 147 8.262 43.124 -35.497 1.00147.05 ATOM 133 N GLN A 148 15.120 46.128 -36.687 1.00139.63 ATOM 134 CA GLN A 148 16.137 46.664 -37.605 1.00142.27 ATOM 135 C GLN A 148 17.485 47.013 -36.948 1.00141.11 ATOM 136 O GLN A 148 18.376 47.518 -37.626 1.00140.53 ATOM 137 CB GLN A 148 15.579 47.917 -38.304 1.00144.93 ATOM 138 CG GLN A 148 14.369 47.656 -39.190 1.00146.43 ATOM 139 CD GLN A 148 13.522 48.899 -39.428 1.00149.90 ATOM 140 OE1 GLN A 148 14.029 50.022 -39.463 1.00150.50 ATOM 141 NE2 GLN A 148 12.221 48.699 -39.586 1.00152.84 ATOM 142 N LEU A 149 17.639 46.753 -35.648 1.00143.54 ATOM 143 CA LEU A 149 18.854 47.135 -34.909 1.00147.10 ATOM 144 C LEU A 149 20.066 46.290 -35.309 1.00150.88 ATOM 145 O LEU A 149 21.119 46.833 -35.638 1.00151.40 ATOM 146 CB LEU A 149 18.625 47.027 -33.393 1.00144.32 ATOM 147 CG LEU A 149 19.766 47.470 -32.462 1.00138.95 ATOM 148 CD1 LEU A 149 20.092 48.946 -32.642 1.00137.63 ATOM 149 CD2 LEU A 149 19.408 47.172 -31.015 1.00136.69 ATOM 150 N GLU A 150 19.904 44.967 -35.275 1.00153.19 ATOM 151 CA GLU A 150 20.990 44.027 -35.598 1.00154.81 ATOM 152 C GLU A 150 21.565 44.253 -37.001 1.00154.72 ATOM 153 O GLU A 150 22.772 44.123 -37.206 1.00154.74 ATOM 154 CB GLU A 150 20.508 42.579 -35.457 1.00158.22 ATOM 155 CG GLU A 150 21.630 41.551 -35.398 1.00162.28 ATOM 156 CD GLU A 150 21.129 40.145 -35.108 1.00166.86 ATOM 157 OE1 GLU A 150 20.054 39.770 -35.625 1.00170.45 ATOM 158 OE2 GLU A 150 21.816 39.408 -34.367 1.00169.86 ATOM 159 N LYS A 151 20.690 44.584 -37.951 1.00157.21 ATOM 160 CA LYS A 151 21.088 44.961 -39.314 1.00161.27 ATOM 161 C LYS A 151 21.931 46.239 -39.325 1.00159.09 ATOM 162 O LYS A 151 22.992 46.279 -39.946 1.00160.20 ATOM 163 CB LYS A 151 19.839 45.144 -40.196 1.00165.06 ATOM 164 CG LYS A 151 20.067 45.691 -41.606 1.00167.51 ATOM 165 CD LYS A 151 21.051 44.858 -42.416 1.00169.14 ATOM 166 CE LYS A 151 21.190 45.396 -43.832 1.00168.64 ATOM 167 NZ LYS A 151 22.159 44.609 -44.645 1.00168.07 ATOM 168 N HIS A 152 21.440 47.272 -38.639 1.00156.12 ATOM 169 CA HIS A 152 22.127 48.570 -38.544 1.00153.66 ATOM 170 C HIS A 152 23.417 48.512 -37.706 1.00153.63 ATOM 171 O HIS A 152 24.347 49.266 -37.976 1.00150.88 ATOM 172 CB HIS A 152 21.153 49.638 -38.005 1.00150.71 ATOM 173 CG HIS A 152 21.805 50.892 -37.519 1.00146.49 ATOM 174 ND1 HIS A 152 21.816 52.040 -38.279 1.00147.05 ATOM 175 CD2 HIS A 152 22.425 51.211 -36.352 1.00144.15 ATOM 176 CE1 HIS A 152 22.431 53.002 -37.616 1.00145.80 ATOM 177 NE2 HIS A 152 22.820 52.529 -36.446 1.00145.61 ATOM 178 N LEU A 153 23.486 47.627 -36.707 1.00155.54 ATOM 179 CA LEU A 153 24.685 47.529 -35.848 1.00155.99 ATOM 180 C LEU A 153 25.945 47.049 -36.587 1.00156.68 ATOM 181 O LEU A 153 27.059 47.400 -36.190 1.00156.88 ATOM 182 CB LEU A 153 24.426 46.655 -34.609 1.00156.67 ATOM 183 CG LEU A 153 23.636 47.301 -33.457 1.00157.79 ATOM 184 CD1 LEU A 153 23.295 46.255 -32.406 1.00158.91 ATOM 185 CD2 LEU A 153 24.402 48.459 -32.822 1.00155.93 ATOM 186 N SER A 154 25.770 46.256 -37.645 1.00157.10 ATOM 187 CA SER A 154 26.862 45.947 -38.577 1.00157.45 ATOM 188 C SER A 154 27.174 47.163 -39.457 1.00159.12 ATOM 189 O SER A 154 28.339 47.503 -39.671 1.00161.48 ATOM 190 CB SER A 154 26.508 44.741 -39.452 1.00157.54 ATOM 191 OG SER A 154 25.345 44.986 -40.224 1.00158.14 ATOM 192 N GLN A 155 26.120 47.817 -39.948 1.00160.88 ATOM 193 CA GLN A 155 26.240 49.038 -40.760 1.00163.16 ATOM 194 C GLN A 155 26.657 50.299 -39.984 1.00159.75 ATOM 195 O GLN A 155 26.955 51.312 -40.610 1.00155.36 ATOM 196 CB GLN A 155 24.911 49.327 -41.480 1.00168.97 ATOM 197 CG GLN A 155 24.491 48.276 -42.503 1.00173.79 ATOM 198 CD GLN A 155 25.224 48.403 -43.828 1.00177.90 ATOM 199 OE1 GLN A 155 25.175 49.447 -44.481 1.00184.37 ATOM 200 NE2 GLN A 155 25.896 47.332 -44.241 1.00179.56 ATOM 201 N CYS A 156 26.661 50.249 -38.648 1.00159.16 ATOM 202 CA CYS A 156 26.931 51.434 -37.815 1.00157.39 ATOM 203 C CYS A 156 28.377 51.910 -37.950 1.00153.22 ATOM 204 O CYS A 156 29.294 51.103 -38.139 1.00152.04 ATOM 205 CB CYS A 156 26.580 51.155 -36.340 1.00157.38 ATOM 206 SG CYS A 156 26.497 52.605 -35.259 1.00154.58 ATOM 207 N ARG A 157 28.558 53.213 -37.793 1.00151.31 ATOM 208 CA ARG A 157 29.810 53.900 -38.120 1.00152.97 ATOM 209 C ARG A 157 30.672 54.210 -36.884 1.00152.90 ATOM 210 O ARG A 157 31.749 54.792 -37.015 1.00154.76 ATOM 211 CB ARG A 157 29.519 55.218 -38.875 1.00154.69 ATOM 212 CG ARG A 157 28.212 55.353 -39.675 1.00158.34 ATOM 213 CD ARG A 157 28.124 54.418 -40.869 1.00161.78 ATOM 214 NE ARG A 157 26.783 54.406 -41.468 1.00162.49 ATOM 215 CZ ARG A 157 26.457 53.825 -42.627 1.00159.84 ATOM 216 NH1 ARG A 157 27.369 53.196 -43.369 1.00157.12 ATOM 217 NH2 ARG A 157 25.198 53.880 -43.055 1.00159.66 ATOM 218 N PHE A 158 30.206 53.789 -35.705 1.00150.14 ATOM 219 CA PHE A 158 30.802 54.149 -34.413 1.00145.82 ATOM 220 C PHE A 158 31.298 52.956 -33.571 1.00144.96 ATOM 221 O PHE A 158 31.845 53.160 -32.485 1.00143.64 ATOM 222 CB PHE A 158 29.772 54.951 -33.602 1.00142.53 ATOM 223 CG PHE A 158 29.527 56.341 -34.131 1.00137.40 ATOM 224 CD1 PHE A 158 28.598 56.572 -35.147 1.00133.20 ATOM 225 CD2 PHE A 158 30.231 57.424 -33.615 1.00136.87 ATOM 226 CE1 PHE A 158 28.382 57.853 -35.631 1.00131.88 ATOM 227 CE2 PHE A 158 30.018 58.709 -34.097 1.00134.85 ATOM 228 CZ PHE A 158 29.095 58.923 -35.108 1.00133.10 ATOM 229 N ALA A 159 31.133 51.726 -34.067 1.00145.45 ATOM 230 CA ALA A 159 31.476 50.525 -33.296 1.00149.69 ATOM 231 C ALA A 159 32.982 50.300 -33.224 1.00152.09 ATOM 232 O ALA A 159 33.718 50.635 -34.155 1.00161.38 ATOM 233 CB ALA A 159 30.796 49.299 -33.887 1.00149.41 ATOM 234 N LEU A 160 33.422 49.686 -32.128 1.00146.11 ATOM 235 CA LEU A 160 34.831 49.353 -31.922 1.00141.38 ATOM 236 C LEU A 160 35.215 48.088 -32.686 1.00134.70 ATOM 237 O LEU A 160 34.514 47.077 -32.633 1.00125.34 ATOM 238 CB LEU A 160 35.116 49.165 -30.430 1.00130.00 ATOM 239 CG LEU A 160 34.807 50.368 -29.525 1.00130.00 ATOM 240 CD1 LEU A 160 34.963 49.990 -28.054 1.00130.00 ATOM 241 CD2 LEU A 160 35.694 51.556 -29.882 1.00130.00 ATOM 242 ZN ZN A 203 24.367 53.570 -35.365 1.00138.16 TER 243 CA GLU D 161 37.982 47.713 3.645 1.00163.68 ATOM 244 C GLU D 161 37.254 47.161 2.406 1.00166.76 ATOM 245 O GLU D 161 37.522 47.605 1.287 1.00164.40 ATOM 246 CB GLU D 161 38.884 46.607 4.206 1.00130.00 ATOM 247 CG GLU D 161 39.930 47.089 5.204 1.00130.00 ATOM 248 CD GLU D 161 40.906 45.996 5.631 1.00130.00 ATOM 249 OE1 GLU D 161 40.797 44.840 5.144 1.00130.00 ATOM 250 OE2 GLU D 161 41.796 46.299 6.460 1.00130.00 ATOM 251 N HIS D 162 36.371 46.177 2.626 1.00172.49 ATOM 252 CA HIS D 162 35.538 45.495 1.586 1.00173.11 ATOM 253 C HIS D 162 36.242 44.368 0.817 1.00181.00 ATOM 254 O HIS D 162 36.059 44.218 -0.397 1.00174.33 ATOM 255 CB HIS D 162 34.854 46.496 0.638 1.00130.00 ATOM 256 CG HIS D 162 34.087 47.536 1.375 1.00130.00 ATOM 257 ND1 HIS D 162 32.821 47.301 1.870 1.00130.00 ATOM 258 CD2 HIS D 162 34.442 48.769 1.803 1.00130.00 ATOM 259 CE1 HIS D 162 32.413 48.364 2.536 1.00130.00 ATOM 260 NE2 HIS D 162 33.383 49.262 2.523 1.00130.00 ATOM 261 N HIS D 163 37.014 43.567 1.554 1.00192.34 ATOM 262 CA HIS D 163 37.718 42.404 1.005 1.00196.37 ATOM 263 C HIS D 163 37.970 41.357 2.090 1.00196.13 ATOM 264 O HIS D 163 37.035 40.733 2.594 1.00193.08 ATOM 265 CB HIS D 163 39.046 42.832 0.366 1.00198.08 ATOM 266 CG HIS D 163 38.900 43.371 -1.024 1.00198.73 ATOM 267 ND1 HIS D 163 38.745 44.715 -1.289 1.00198.77 ATOM 268 CD2 HIS D 163 38.864 42.745 -2.224 1.00196.20 ATOM 269 CE1 HIS D 163 38.631 44.894 -2.593 1.00196.52 ATOM 270 NE2 HIS D 163 38.700 43.714 -3.183 1.00194.69 ATOM 271 ZN ZN D 203 32.563 60.249 10.721 1.00141.07 TER