HEADER TRANSFERASE 31-DEC-69 5VNZ TITLE Structure of a TRAF6-Ubc13~Ub complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF receptor-associated factor 6; COMPND 3 CHAIN: A, D; COMPND 4 EC: 2.3.2.27; COMPND 5 FRAGMENT: residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.41 ANGSTORMS DBREF 5VNZ D 50 167 PDB 5VNZ 5VNZ 50 167 SEQRES 1 D 33 LEU THR VAL LYS CYS SER ASN PHE GLY CYS SER GLU LYS SEQRES 2 D 33 MET GLU LEU ARG GLN LEU GLU LYS HIS LEU SER GLN CYS SEQRES 3 D 33 ARG PHE ALA LEU GLU HIS HIS ATOM 1 N LEU D 131 37.181 75.979 6.916 1.00127.15 ATOM 2 CA LEU D 131 36.009 75.659 6.084 1.00127.80 ATOM 3 C LEU D 131 35.366 74.352 6.548 1.00126.48 ATOM 4 O LEU D 131 36.070 73.395 6.872 1.00130.72 ATOM 5 CB LEU D 131 36.398 75.524 4.606 1.00128.19 ATOM 6 CG LEU D 131 36.978 76.744 3.881 1.00127.49 ATOM 7 CD1 LEU D 131 37.485 76.350 2.501 1.00126.12 ATOM 8 CD2 LEU D 131 35.957 77.867 3.776 1.00128.14 ATOM 9 N THR D 132 34.035 74.315 6.577 1.00124.41 ATOM 10 CA THR D 132 33.305 73.131 7.042 1.00125.81 ATOM 11 C THR D 132 33.250 72.043 5.961 1.00121.27 ATOM 12 O THR D 132 33.084 72.347 4.779 1.00118.28 ATOM 13 CB THR D 132 31.879 73.482 7.523 1.00129.96 ATOM 14 OG1 THR D 132 31.252 74.363 6.585 1.00137.97 ATOM 15 CG2 THR D 132 31.922 74.159 8.889 1.00129.82 ATOM 16 N VAL D 133 33.394 70.786 6.388 1.00118.92 ATOM 17 CA VAL D 133 33.436 69.616 5.497 1.00117.44 ATOM 18 C VAL D 133 32.587 68.468 6.046 1.00118.75 ATOM 19 O VAL D 133 32.295 68.428 7.241 1.00119.61 ATOM 20 CB VAL D 133 34.884 69.099 5.282 1.00114.04 ATOM 21 CG1 VAL D 133 35.725 70.142 4.559 1.00112.64 ATOM 22 CG2 VAL D 133 35.552 68.701 6.598 1.00113.38 ATOM 23 N LYS D 134 32.207 67.542 5.165 1.00122.94 ATOM 24 CA LYS D 134 31.471 66.327 5.545 1.00127.86 ATOM 25 C LYS D 134 32.425 65.153 5.747 1.00128.84 ATOM 26 O LYS D 134 33.529 65.148 5.209 1.00127.73 ATOM 27 CB LYS D 134 30.418 65.964 4.486 1.00134.00 ATOM 28 CG LYS D 134 29.043 66.551 4.760 1.00139.31 ATOM 29 CD LYS D 134 28.029 66.159 3.696 1.00143.46 ATOM 30 CE LYS D 134 28.181 66.994 2.434 1.00145.27 ATOM 31 NZ LYS D 134 27.103 66.709 1.447 1.00147.31 ATOM 32 N CYS D 135 31.982 64.162 6.519 1.00129.24 ATOM 33 CA CYS D 135 32.766 62.949 6.768 1.00127.48 ATOM 34 C CYS D 135 32.889 62.145 5.476 1.00128.81 ATOM 35 O CYS D 135 31.880 61.841 4.835 1.00127.40 ATOM 36 CB CYS D 135 32.105 62.083 7.845 1.00128.56 ATOM 37 SG CYS D 135 33.163 60.756 8.502 1.00127.39 ATOM 38 N SER D 136 34.120 61.804 5.100 1.00132.13 ATOM 39 CA SER D 136 34.389 61.079 3.851 1.00135.13 ATOM 40 C SER D 136 33.956 59.606 3.870 1.00136.28 ATOM 41 O SER D 136 33.797 59.000 2.808 1.00139.50 ATOM 42 CB SER D 136 35.877 61.171 3.496 1.00135.84 ATOM 43 OG SER D 136 36.682 60.651 4.539 1.00137.99 ATOM 44 N ASN D 137 33.775 59.038 5.063 1.00137.54 ATOM 45 CA ASN D 137 33.381 57.634 5.219 1.00138.21 ATOM 46 C ASN D 137 31.939 57.392 4.782 1.00137.84 ATOM 47 O ASN D 137 31.064 58.230 4.998 1.00134.52 ATOM 48 CB ASN D 137 33.571 57.171 6.669 1.00138.55 ATOM 49 CG ASN D 137 35.031 57.130 7.080 1.00139.70 ATOM 50 OD1 ASN D 137 35.840 56.423 6.478 1.00137.47 ATOM 51 ND2 ASN D 137 35.377 57.912 8.096 1.00143.18 ATOM 52 N PHE D 138 31.712 56.223 4.184 1.00141.61 ATOM 53 CA PHE D 138 30.421 55.857 3.598 1.00146.02 ATOM 54 C PHE D 138 29.408 55.561 4.707 1.00137.96 ATOM 55 O PHE D 138 29.537 54.559 5.412 1.00135.53 ATOM 56 CB PHE D 138 30.574 54.625 2.685 1.00158.84 ATOM 57 CG PHE D 138 31.124 54.929 1.307 1.00170.41 ATOM 58 CD1 PHE D 138 32.394 55.493 1.138 1.00172.27 ATOM 59 CD2 PHE D 138 30.381 54.617 0.166 1.00174.14 ATOM 60 CE1 PHE D 138 32.892 55.759 -0.132 1.00172.45 ATOM 61 CE2 PHE D 138 30.881 54.878 -1.106 1.00172.89 ATOM 62 CZ PHE D 138 32.136 55.451 -1.255 1.00173.26 ATOM 63 N GLY D 139 28.416 56.439 4.858 1.00133.41 ATOM 64 CA GLY D 139 27.368 56.291 5.874 1.00129.14 ATOM 65 C GLY D 139 27.334 57.397 6.917 1.00126.82 ATOM 66 O GLY D 139 26.265 57.732 7.426 1.00120.74 ATOM 67 N CYS D 140 28.499 57.956 7.247 1.00128.79 ATOM 68 CA CYS D 140 28.604 58.998 8.277 1.00134.51 ATOM 69 C CYS D 140 28.030 60.332 7.787 1.00138.72 ATOM 70 O CYS D 140 28.324 60.765 6.671 1.00145.18 ATOM 71 CB CYS D 140 30.061 59.174 8.712 1.00134.96 ATOM 72 SG CYS D 140 30.314 60.342 10.076 1.00132.60 ATOM 73 N SER D 141 27.219 60.972 8.632 1.00139.44 ATOM 74 CA SER D 141 26.508 62.209 8.285 1.00140.42 ATOM 75 C SER D 141 27.075 63.477 8.942 1.00144.08 ATOM 76 O SER D 141 26.617 64.581 8.630 1.00147.35 ATOM 77 CB SER D 141 25.034 62.066 8.670 1.00139.22 ATOM 78 OG SER D 141 24.894 61.830 10.061 1.00139.31 ATOM 79 N GLU D 142 28.062 63.326 9.827 1.00146.41 ATOM 80 CA GLU D 142 28.542 64.438 10.659 1.00148.33 ATOM 81 C GLU D 142 29.402 65.439 9.884 1.00143.97 ATOM 82 O GLU D 142 30.051 65.080 8.897 1.00139.80 ATOM 83 CB GLU D 142 29.324 63.900 11.865 1.00153.60 ATOM 84 CG GLU D 142 28.488 63.063 12.821 1.00156.73 ATOM 85 CD GLU D 142 29.322 62.305 13.843 1.00159.51 ATOM 86 OE1 GLU D 142 30.429 62.766 14.209 1.00159.95 ATOM 87 OE2 GLU D 142 28.861 61.236 14.288 1.00160.62 ATOM 88 N LYS D 143 29.397 66.688 10.355 1.00141.51 ATOM 89 CA LYS D 143 30.136 67.792 9.732 1.00139.68 ATOM 90 C LYS D 143 31.048 68.490 10.740 1.00137.88 ATOM 91 O LYS D 143 30.808 68.443 11.949 1.00142.66 ATOM 92 CB LYS D 143 29.167 68.806 9.124 1.00140.17 ATOM 93 CG LYS D 143 28.253 68.222 8.059 1.00141.45 ATOM 94 CD LYS D 143 27.377 69.298 7.437 1.00142.02 ATOM 95 CE LYS D 143 26.306 68.693 6.545 1.00144.14 ATOM 96 NZ LYS D 143 25.450 69.735 5.919 1.00146.42 ATOM 97 N MET D 144 32.090 69.139 10.226 1.00133.31 ATOM 98 CA MET D 144 33.151 69.720 11.057 1.00129.85 ATOM 99 C MET D 144 34.052 70.632 10.234 1.00127.94 ATOM 100 O MET D 144 33.972 70.633 9.009 1.00125.14 ATOM 101 CB MET D 144 34.012 68.599 11.653 1.00129.36 ATOM 102 CG MET D 144 34.784 67.790 10.609 1.00128.86 ATOM 103 SD MET D 144 34.792 66.028 10.905 1.00131.27 ATOM 104 CE MET D 144 33.079 65.642 10.545 1.00133.64 ATOM 105 N GLU D 145 34.924 71.377 10.909 1.00129.31 ATOM 106 CA GLU D 145 35.989 72.123 10.233 1.00130.60 ATOM 107 C GLU D 145 37.046 71.147 9.717 1.00129.11 ATOM 108 O GLU D 145 37.270 70.095 10.323 1.00133.52 ATOM 109 CB GLU D 145 36.644 73.130 11.179 1.00135.52 ATOM 110 CG GLU D 145 35.708 74.218 11.685 1.00140.20 ATOM 111 CD GLU D 145 36.430 75.345 12.405 1.00143.91 ATOM 112 OE1 GLU D 145 37.594 75.158 12.828 1.00146.91 ATOM 113 OE2 GLU D 145 35.822 76.426 12.551 1.00145.21 ATOM 114 N LEU D 146 37.695 71.505 8.608 1.00126.88 ATOM 115 CA LEU D 146 38.714 70.653 7.973 1.00126.26 ATOM 116 C LEU D 146 39.858 70.270 8.913 1.00129.53 ATOM 117 O LEU D 146 40.357 69.145 8.854 1.00129.67 ATOM 118 CB LEU D 146 39.283 71.345 6.727 1.00123.57 ATOM 119 CG LEU D 146 40.411 70.652 5.955 1.00121.92 ATOM 120 CD1 LEU D 146 39.962 69.300 5.428 1.00122.68 ATOM 121 CD2 LEU D 146 40.876 71.543 4.819 1.00122.08 ATOM 122 N ARG D 147 40.266 71.208 9.767 1.00134.20 ATOM 123 CA ARG D 147 41.317 70.967 10.768 1.00138.99 ATOM 124 C ARG D 147 40.978 69.837 11.750 1.00141.38 ATOM 125 O ARG D 147 41.871 69.106 12.183 1.00143.67 ATOM 126 CB ARG D 147 41.619 72.254 11.546 1.00142.46 ATOM 127 CG ARG D 147 42.973 72.260 12.242 1.00143.98 ATOM 128 CD ARG D 147 43.269 73.562 12.992 1.00142.36 ATOM 129 NE ARG D 147 43.337 74.746 12.121 1.00142.65 ATOM 130 CZ ARG D 147 42.315 75.555 11.812 1.00142.95 ATOM 131 NH1 ARG D 147 41.079 75.344 12.279 1.00141.31 ATOM 132 NH2 ARG D 147 42.520 76.598 11.007 1.00140.72 ATOM 133 N GLN D 148 39.690 69.690 12.074 1.00144.98 ATOM 134 CA GLN D 148 39.201 68.646 12.987 1.00148.60 ATOM 135 C GLN D 148 38.876 67.297 12.313 1.00147.10 ATOM 136 O GLN D 148 38.453 66.359 13.000 1.00149.39 ATOM 137 CB GLN D 148 37.956 69.139 13.731 1.00153.87 ATOM 138 CG GLN D 148 38.181 70.377 14.587 1.00159.38 ATOM 139 CD GLN D 148 36.954 70.770 15.386 1.00165.41 ATOM 140 OE1 GLN D 148 35.820 70.609 14.931 1.00167.84 ATOM 141 NE2 GLN D 148 37.175 71.304 16.586 1.00172.68 ATOM 142 N LEU D 149 39.084 67.186 10.997 1.00145.79 ATOM 143 CA LEU D 149 38.729 65.975 10.245 1.00144.12 ATOM 144 C LEU D 149 39.638 64.794 10.577 1.00144.50 ATOM 145 O LEU D 149 39.150 63.711 10.903 1.00142.47 ATOM 146 CB LEU D 149 38.761 66.247 8.733 1.00141.28 ATOM 147 CG LEU D 149 38.330 65.122 7.784 1.00138.47 ATOM 148 CD1 LEU D 149 36.880 64.725 8.016 1.00139.06 ATOM 149 CD2 LEU D 149 38.540 65.532 6.335 1.00136.42 ATOM 150 N GLU D 150 40.950 65.012 10.489 1.00147.08 ATOM 151 CA GLU D 150 41.946 63.956 10.731 1.00151.29 ATOM 152 C GLU D 150 41.814 63.333 12.125 1.00152.34 ATOM 153 O GLU D 150 42.007 62.127 12.290 1.00149.68 ATOM 154 CB GLU D 150 43.366 64.500 10.535 1.00155.88 ATOM 155 CG GLU D 150 44.432 63.423 10.388 1.00161.62 ATOM 156 CD GLU D 150 45.845 63.980 10.402 1.00167.78 ATOM 157 OE1 GLU D 150 46.070 65.088 9.867 1.00173.84 ATOM 158 OE2 GLU D 150 46.739 63.299 10.947 1.00171.58 ATOM 159 N LYS D 151 41.491 64.166 13.115 1.00157.80 ATOM 160 CA LYS D 151 41.204 63.710 14.482 1.00163.75 ATOM 161 C LYS D 151 39.963 62.808 14.529 1.00162.49 ATOM 162 O LYS D 151 39.991 61.722 15.115 1.00165.15 ATOM 163 CB LYS D 151 41.006 64.914 15.416 1.00168.98 ATOM 164 CG LYS D 151 42.264 65.745 15.648 1.00173.45 ATOM 165 CD LYS D 151 41.955 67.211 15.929 1.00175.59 ATOM 166 CE LYS D 151 41.226 67.411 17.249 1.00176.66 ATOM 167 NZ LYS D 151 40.846 68.837 17.448 1.00176.43 ATOM 168 N HIS D 152 38.886 63.277 13.910 1.00159.70 ATOM 169 CA HIS D 152 37.615 62.533 13.850 1.00156.74 ATOM 170 C HIS D 152 37.682 61.278 12.959 1.00153.49 ATOM 171 O HIS D 152 36.975 60.316 13.223 1.00154.00 ATOM 172 CB HIS D 152 36.454 63.478 13.458 1.00154.96 ATOM 173 CG HIS D 152 35.438 62.882 12.526 1.00153.67 ATOM 174 ND1 HIS D 152 35.483 63.152 11.181 1.00160.17 ATOM 175 CD2 HIS D 152 34.393 62.038 12.710 1.00149.41 ATOM 176 CE1 HIS D 152 34.499 62.528 10.574 1.00160.13 ATOM 177 NE2 HIS D 152 33.819 61.841 11.474 1.00153.41 ATOM 178 N LEU D 153 38.519 61.281 11.921 1.00151.74 ATOM 179 CA LEU D 153 38.631 60.116 11.015 1.00152.71 ATOM 180 C LEU D 153 39.192 58.853 11.687 1.00154.26 ATOM 181 O LEU D 153 38.869 57.740 11.264 1.00154.69 ATOM 182 CB LEU D 153 39.440 60.451 9.750 1.00152.89 ATOM 183 CG LEU D 153 38.722 61.246 8.653 1.00151.10 ATOM 184 CD1 LEU D 153 39.716 61.667 7.580 1.00150.92 ATOM 185 CD2 LEU D 153 37.570 60.466 8.036 1.00149.14 ATOM 186 N SER D 154 40.021 59.025 12.718 1.00155.58 ATOM 187 CA SER D 154 40.411 57.915 13.597 1.00155.94 ATOM 188 C SER D 154 39.246 57.521 14.512 1.00156.06 ATOM 189 O SER D 154 38.966 56.337 14.699 1.00154.47 ATOM 190 CB SER D 154 41.636 58.288 14.436 1.00156.81 ATOM 191 OG SER D 154 41.374 59.415 15.254 1.00159.49 ATOM 192 N GLN D 155 38.568 58.528 15.066 1.00159.21 ATOM 193 CA GLN D 155 37.386 58.325 15.918 1.00163.22 ATOM 194 C GLN D 155 36.112 57.879 15.170 1.00161.96 ATOM 195 O GLN D 155 35.130 57.501 15.815 1.00158.79 ATOM 196 CB GLN D 155 37.068 59.613 16.694 1.00169.72 ATOM 197 CG GLN D 155 38.140 60.054 17.683 1.00175.59 ATOM 198 CD GLN D 155 38.101 59.281 18.991 1.00182.57 ATOM 199 OE1 GLN D 155 39.094 58.674 19.394 1.00187.70 ATOM 200 NE2 GLN D 155 36.954 59.303 19.662 1.00186.96 ATOM 201 N CYS D 156 36.113 57.936 13.834 1.00164.61 ATOM 202 CA CYS D 156 34.916 57.645 13.030 1.00163.45 ATOM 203 C CYS D 156 34.533 56.170 13.095 1.00161.17 ATOM 204 O CYS D 156 35.385 55.291 13.206 1.00163.19 ATOM 205 CB CYS D 156 35.101 58.084 11.568 1.00163.02 ATOM 206 SG CYS D 156 33.582 58.147 10.566 1.00158.62 ATOM 207 N ARG D 157 33.221 55.929 13.022 1.00159.00 ATOM 208 CA ARG D 157 32.614 54.640 13.336 1.00156.62 ATOM 209 C ARG D 157 32.251 53.832 12.077 1.00149.35 ATOM 210 O ARG D 157 31.681 52.743 12.188 1.00146.83 ATOM 211 CB ARG D 157 31.362 54.860 14.199 1.00162.64 ATOM 212 CG ARG D 157 31.672 55.459 15.567 1.00170.37 ATOM 213 CD ARG D 157 31.815 56.975 15.565 1.00174.98 ATOM 214 NE ARG D 157 32.089 57.526 16.894 1.00180.01 ATOM 215 CZ ARG D 157 32.445 58.790 17.148 1.00183.32 ATOM 216 NH1 ARG D 157 32.588 59.684 16.166 1.00185.75 ATOM 217 NH2 ARG D 157 32.662 59.171 18.407 1.00183.47 ATOM 218 N PHE D 158 32.587 54.361 10.896 1.00143.13 ATOM 219 CA PHE D 158 32.101 53.850 9.605 1.00138.25 ATOM 220 C PHE D 158 33.205 53.395 8.630 1.00138.92 ATOM 221 O PHE D 158 32.887 52.927 7.531 1.00135.04 ATOM 222 CB PHE D 158 31.252 54.942 8.939 1.00133.51 ATOM 223 CG PHE D 158 29.911 55.157 9.587 1.00128.17 ATOM 224 CD1 PHE D 158 28.804 54.437 9.156 1.00126.59 ATOM 225 CD2 PHE D 158 29.742 56.097 10.604 1.00123.63 ATOM 226 CE1 PHE D 158 27.553 54.636 9.733 1.00124.30 ATOM 227 CE2 PHE D 158 28.497 56.300 11.185 1.00121.41 ATOM 228 CZ PHE D 158 27.400 55.572 10.746 1.00121.32 ATOM 229 N ALA D 159 34.477 53.511 9.017 1.00143.20 ATOM 230 CA ALA D 159 35.601 53.213 8.111 1.00149.04 ATOM 231 C ALA D 159 35.756 51.695 7.878 1.00150.98 ATOM 232 O ALA D 159 35.535 50.908 8.802 1.00150.50 ATOM 233 CB ALA D 159 36.891 53.810 8.664 1.00150.40 ATOM 234 N LEU D 160 36.103 51.300 6.646 1.00153.79 ATOM 235 CA LEU D 160 36.031 49.887 6.197 1.00158.28 ATOM 236 C LEU D 160 37.030 49.528 5.071 1.00162.61 ATOM 237 O LEU D 160 37.730 50.405 4.557 1.00168.12 ATOM 238 CB LEU D 160 34.595 49.573 5.736 1.00130.00 ATOM 239 CG LEU D 160 33.489 49.466 6.800 1.00130.00 ATOM 240 CD1 LEU D 160 32.129 49.323 6.128 1.00130.00 ATOM 241 CD2 LEU D 160 33.743 48.309 7.768 1.00130.00 ATOM 242 N GLU D 161 37.085 48.237 4.706 1.00162.48 ATOM 243 CA GLU D 161 37.982 47.713 3.645 1.00163.68 ATOM 244 C GLU D 161 37.254 47.161 2.406 1.00166.76 ATOM 245 O GLU D 161 37.522 47.605 1.287 1.00164.40 ATOM 246 CB GLU D 161 38.884 46.607 4.206 1.00130.00 ATOM 247 CG GLU D 161 39.930 47.089 5.204 1.00130.00 ATOM 248 CD GLU D 161 40.906 45.996 5.631 1.00130.00 ATOM 249 OE1 GLU D 161 40.797 44.840 5.144 1.00130.00 ATOM 250 OE2 GLU D 161 41.796 46.299 6.460 1.00130.00 ATOM 251 N HIS D 162 36.371 46.177 2.626 1.00172.49 ATOM 252 CA HIS D 162 35.538 45.495 1.586 1.00173.11 ATOM 253 C HIS D 162 36.242 44.368 0.817 1.00181.00 ATOM 254 O HIS D 162 36.059 44.218 -0.397 1.00174.33 ATOM 255 CB HIS D 162 34.854 46.496 0.638 1.00130.00 ATOM 256 CG HIS D 162 34.087 47.536 1.375 1.00130.00 ATOM 257 ND1 HIS D 162 32.821 47.301 1.870 1.00130.00 ATOM 258 CD2 HIS D 162 34.442 48.769 1.803 1.00130.00 ATOM 259 CE1 HIS D 162 32.413 48.364 2.536 1.00130.00 ATOM 260 NE2 HIS D 162 33.383 49.262 2.523 1.00130.00 ATOM 261 N HIS D 163 37.014 43.567 1.554 1.00192.34 ATOM 262 CA HIS D 163 37.718 42.404 1.005 1.00196.37 ATOM 263 C HIS D 163 37.970 41.357 2.090 1.00196.13 ATOM 264 O HIS D 163 37.035 40.733 2.594 1.00193.08 ATOM 265 CB HIS D 163 39.046 42.832 0.366 1.00198.08 ATOM 266 CG HIS D 163 38.900 43.371 -1.024 1.00198.73 ATOM 267 ND1 HIS D 163 38.745 44.715 -1.289 1.00198.77 ATOM 268 CD2 HIS D 163 38.864 42.745 -2.224 1.00196.20 ATOM 269 CE1 HIS D 163 38.631 44.894 -2.593 1.00196.52 ATOM 270 NE2 HIS D 163 38.700 43.714 -3.183 1.00194.69 ATOM 271 ZN ZN D 203 32.563 60.249 10.721 1.00141.07 TER