HEADER TRANSFERASE 31-DEC-69 5VO0 TITLE Structure of a TRAF6-Ubc13~Ub complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF receptor-associated factor 6; COMPND 3 CHAIN: A, D; COMPND 4 EC: 2.3.2.27; COMPND 5 FRAGMENT: residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.90 ANGSTORMS DBREF 5VO0 D 50 221 PDB 5VO0 5VO0 50 221 SEQRES 1 D 29 GLN ARG ILE MET THR CYS PRO ASP CYS ALA GLY SER PHE SEQRES 2 D 29 VAL TYR ALA VAL LYS GLN SER HIS GLU GLN PHE CYS PRO SEQRES 3 D 29 PHE ALA ASN ATOM 1 N GLN D 185 70.693 -55.836 136.981 1.00126.62 ATOM 2 CA GLN D 185 71.401 -54.921 137.898 1.00126.24 ATOM 3 C GLN D 185 70.462 -54.154 138.852 1.00126.25 ATOM 4 O GLN D 185 70.785 -53.036 139.276 1.00121.38 ATOM 5 CB GLN D 185 72.264 -53.915 137.117 1.00127.73 ATOM 6 CG GLN D 185 73.305 -54.533 136.197 1.00131.25 ATOM 7 CD GLN D 185 74.354 -53.528 135.756 1.00136.82 ATOM 8 OE1 GLN D 185 75.228 -53.143 136.535 1.00140.38 ATOM 9 NE2 GLN D 185 74.268 -53.091 134.503 1.00141.26 ATOM 10 N ARG D 186 69.323 -54.750 139.213 1.00130.67 ATOM 11 CA ARG D 186 68.382 -54.107 140.134 1.00136.13 ATOM 12 C ARG D 186 68.746 -54.424 141.587 1.00132.73 ATOM 13 O ARG D 186 69.215 -55.517 141.894 1.00136.81 ATOM 14 CB ARG D 186 66.938 -54.508 139.813 1.00144.70 ATOM 15 CG ARG D 186 65.872 -53.698 140.542 1.00153.80 ATOM 16 CD ARG D 186 65.824 -52.230 140.120 1.00160.11 ATOM 17 NE ARG D 186 65.118 -51.383 141.087 1.00164.72 ATOM 18 CZ ARG D 186 64.702 -50.132 140.864 1.00166.99 ATOM 19 NH1 ARG D 186 64.887 -49.535 139.683 1.00169.31 ATOM 20 NH2 ARG D 186 64.072 -49.468 141.836 1.00164.46 ATOM 21 N ILE D 187 68.497 -53.460 142.470 1.00128.37 ATOM 22 CA ILE D 187 69.108 -53.422 143.801 1.00126.92 ATOM 23 C ILE D 187 68.246 -54.133 144.861 1.00123.63 ATOM 24 O ILE D 187 67.350 -53.542 145.467 1.00115.69 ATOM 25 CB ILE D 187 69.454 -51.955 144.190 1.00130.83 ATOM 26 CG1 ILE D 187 70.488 -51.368 143.203 1.00135.06 ATOM 27 CG2 ILE D 187 70.014 -51.860 145.609 1.00131.50 ATOM 28 CD1 ILE D 187 69.930 -50.812 141.905 1.00136.25 ATOM 29 N MET D 188 68.545 -55.416 145.066 1.00127.04 ATOM 30 CA MET D 188 67.873 -56.269 146.063 1.00129.49 ATOM 31 C MET D 188 68.124 -55.809 147.506 1.00126.36 ATOM 32 O MET D 188 69.203 -55.319 147.828 1.00130.46 ATOM 33 CB MET D 188 68.359 -57.724 145.896 1.00134.58 ATOM 34 CG MET D 188 67.654 -58.788 146.738 1.00142.21 ATOM 35 SD MET D 188 65.944 -59.130 146.247 1.00155.96 ATOM 36 CE MET D 188 65.462 -60.371 147.447 1.00153.41 ATOM 37 N THR D 189 67.118 -55.982 148.366 1.00123.66 ATOM 38 CA THR D 189 67.258 -55.810 149.829 1.00122.49 ATOM 39 C THR D 189 67.203 -57.157 150.581 1.00119.31 ATOM 40 O THR D 189 66.148 -57.802 150.641 1.00114.70 ATOM 41 CB THR D 189 66.157 -54.898 150.391 1.00126.44 ATOM 42 OG1 THR D 189 64.870 -55.468 150.115 1.00129.95 ATOM 43 CG2 THR D 189 66.247 -53.509 149.773 1.00127.75 ATOM 44 N CYS D 190 68.331 -57.551 151.181 1.00121.54 ATOM 45 CA CYS D 190 68.501 -58.900 151.751 1.00124.99 ATOM 46 C CYS D 190 67.313 -59.265 152.630 1.00133.16 ATOM 47 O CYS D 190 66.963 -58.502 153.529 1.00132.08 ATOM 48 CB CYS D 190 69.788 -59.027 152.586 1.00122.54 ATOM 49 SG CYS D 190 70.191 -60.710 153.144 1.00117.42 ATOM 50 N PRO D 191 66.664 -60.406 152.343 1.00148.81 ATOM 51 CA PRO D 191 65.649 -60.906 153.264 1.00154.59 ATOM 52 C PRO D 191 66.308 -61.572 154.479 1.00158.05 ATOM 53 O PRO D 191 67.086 -62.507 154.309 1.00161.63 ATOM 54 CB PRO D 191 64.870 -61.924 152.420 1.00157.22 ATOM 55 CG PRO D 191 65.829 -62.385 151.381 1.00157.48 ATOM 56 CD PRO D 191 66.820 -61.275 151.159 1.00155.43 ATOM 57 N ASP D 192 66.001 -61.058 155.673 1.00159.29 ATOM 58 CA ASP D 192 66.508 -61.529 156.997 1.00158.91 ATOM 59 C ASP D 192 67.928 -61.059 157.409 1.00152.96 ATOM 60 O ASP D 192 68.544 -61.623 158.323 1.00151.66 ATOM 61 CB ASP D 192 66.255 -63.051 157.258 1.00161.56 ATOM 62 CG ASP D 192 67.251 -63.994 156.554 1.00162.66 ATOM 63 OD1 ASP D 192 68.481 -63.792 156.626 1.00165.17 ATOM 64 OD2 ASP D 192 66.782 -64.977 155.937 1.00159.26 ATOM 65 N CYS D 193 68.405 -59.997 156.757 1.00143.19 ATOM 66 CA CYS D 193 69.606 -59.248 157.201 1.00133.80 ATOM 67 C CYS D 193 69.634 -57.740 156.855 1.00128.26 ATOM 68 O CYS D 193 70.347 -56.983 157.516 1.00119.85 ATOM 69 CB CYS D 193 70.883 -59.975 156.745 1.00130.58 ATOM 70 SG CYS D 193 72.048 -59.105 155.670 1.00125.26 ATOM 71 N ALA D 194 68.881 -57.318 155.833 1.00127.39 ATOM 72 CA ALA D 194 68.586 -55.901 155.550 1.00125.81 ATOM 73 C ALA D 194 69.796 -55.077 155.091 1.00126.56 ATOM 74 O ALA D 194 70.204 -54.117 155.753 1.00131.41 ATOM 75 CB ALA D 194 67.894 -55.243 156.743 1.00125.34 ATOM 76 N GLY D 195 70.341 -55.455 153.938 1.00124.18 ATOM 77 CA GLY D 195 71.477 -54.760 153.322 1.00122.18 ATOM 78 C GLY D 195 71.239 -54.523 151.842 1.00120.73 ATOM 79 O GLY D 195 70.666 -55.373 151.166 1.00121.83 ATOM 80 N SER D 196 71.686 -53.372 151.340 1.00121.20 ATOM 81 CA SER D 196 71.505 -52.997 149.931 1.00120.83 ATOM 82 C SER D 196 72.649 -53.526 149.070 1.00116.91 ATOM 83 O SER D 196 73.814 -53.235 149.341 1.00118.45 ATOM 84 CB SER D 196 71.441 -51.470 149.779 1.00123.65 ATOM 85 OG SER D 196 70.337 -50.913 150.470 1.00127.28 ATOM 86 N PHE D 197 72.316 -54.308 148.044 1.00113.50 ATOM 87 CA PHE D 197 73.289 -54.724 147.027 1.00113.65 ATOM 88 C PHE D 197 72.617 -54.966 145.677 1.00121.03 ATOM 89 O PHE D 197 71.397 -55.131 145.594 1.00127.76 ATOM 90 CB PHE D 197 74.051 -55.976 147.471 1.00107.87 ATOM 91 CG PHE D 197 73.164 -57.141 147.809 1.00103.60 ATOM 92 CD1 PHE D 197 72.715 -58.003 146.817 1.00103.57 ATOM 93 CD2 PHE D 197 72.782 -57.383 149.121 1.00101.57 ATOM 94 CE1 PHE D 197 71.900 -59.080 147.127 1.00102.01 ATOM 95 CE2 PHE D 197 71.967 -58.459 149.436 1.00100.42 ATOM 96 CZ PHE D 197 71.522 -59.307 148.438 1.00100.62 ATOM 97 N VAL D 198 73.435 -55.026 144.632 1.00124.39 ATOM 98 CA VAL D 198 72.950 -55.148 143.258 1.00124.24 ATOM 99 C VAL D 198 72.775 -56.640 142.965 1.00122.07 ATOM 100 O VAL D 198 73.694 -57.419 143.205 1.00116.80 ATOM 101 CB VAL D 198 73.942 -54.502 142.259 1.00129.11 ATOM 102 CG1 VAL D 198 73.324 -54.396 140.872 1.00131.29 ATOM 103 CG2 VAL D 198 74.370 -53.113 142.735 1.00130.34 ATOM 104 N TYR D 199 71.610 -57.038 142.446 1.00126.38 ATOM 105 CA TYR D 199 71.299 -58.466 142.186 1.00130.86 ATOM 106 C TYR D 199 72.411 -59.226 141.437 1.00130.32 ATOM 107 O TYR D 199 72.553 -60.437 141.601 1.00126.24 ATOM 108 CB TYR D 199 69.952 -58.613 141.445 1.00136.54 ATOM 109 CG TYR D 199 69.535 -60.052 141.167 1.00143.36 ATOM 110 CD1 TYR D 199 69.989 -60.721 140.024 1.00148.40 ATOM 111 CD2 TYR D 199 68.695 -60.749 142.044 1.00147.47 ATOM 112 CE1 TYR D 199 69.629 -62.038 139.767 1.00149.93 ATOM 113 CE2 TYR D 199 68.322 -62.068 141.788 1.00148.81 ATOM 114 CZ TYR D 199 68.791 -62.707 140.649 1.00148.61 ATOM 115 OH TYR D 199 68.430 -64.009 140.387 1.00146.33 ATOM 116 N ALA D 200 73.179 -58.520 140.609 1.00135.66 ATOM 117 CA ALA D 200 74.403 -59.071 140.017 1.00143.82 ATOM 118 C ALA D 200 75.350 -59.714 141.047 1.00151.39 ATOM 119 O ALA D 200 75.869 -60.809 140.808 1.00157.41 ATOM 120 CB ALA D 200 75.141 -57.990 139.237 1.00142.93 ATOM 121 N VAL D 201 75.534 -59.048 142.191 1.00155.02 ATOM 122 CA VAL D 201 76.562 -59.419 143.185 1.00154.73 ATOM 123 C VAL D 201 76.054 -60.184 144.432 1.00150.26 ATOM 124 O VAL D 201 76.693 -60.122 145.488 1.00149.50 ATOM 125 CB VAL D 201 77.402 -58.169 143.618 1.00158.42 ATOM 126 CG1 VAL D 201 78.016 -57.487 142.400 1.00159.22 ATOM 127 CG2 VAL D 201 76.600 -57.157 144.446 1.00158.18 ATOM 128 N LYS D 202 74.945 -60.923 144.314 1.00146.48 ATOM 129 CA LYS D 202 74.379 -61.674 145.464 1.00145.52 ATOM 130 C LYS D 202 75.400 -62.606 146.113 1.00141.91 ATOM 131 O LYS D 202 75.610 -62.561 147.322 1.00141.21 ATOM 132 CB LYS D 202 73.185 -62.554 145.066 1.00150.18 ATOM 133 CG LYS D 202 72.036 -61.855 144.358 1.00156.46 ATOM 134 CD LYS D 202 70.693 -62.496 144.682 1.00161.61 ATOM 135 CE LYS D 202 70.132 -62.009 146.011 1.00163.32 ATOM 136 NZ LYS D 202 69.026 -62.869 146.515 1.00164.61 ATOM 137 N GLN D 203 76.033 -63.427 145.276 1.00140.98 ATOM 138 CA GLN D 203 76.900 -64.544 145.705 1.00139.16 ATOM 139 C GLN D 203 77.924 -64.152 146.774 1.00131.86 ATOM 140 O GLN D 203 78.211 -64.944 147.674 1.00127.93 ATOM 141 CB GLN D 203 77.654 -65.177 144.514 1.00146.13 ATOM 142 CG GLN D 203 76.824 -65.493 143.267 1.00152.10 ATOM 143 CD GLN D 203 76.857 -64.384 142.215 1.00158.03 ATOM 144 OE1 GLN D 203 77.021 -63.202 142.538 1.00162.46 ATOM 145 NE2 GLN D 203 76.685 -64.761 140.955 1.00161.18 ATOM 146 N SER D 204 78.466 -62.938 146.663 1.00127.33 ATOM 147 CA SER D 204 79.457 -62.429 147.614 1.00125.99 ATOM 148 C SER D 204 78.866 -61.873 148.918 1.00123.30 ATOM 149 O SER D 204 79.566 -61.858 149.929 1.00123.87 ATOM 150 CB SER D 204 80.336 -61.367 146.948 1.00127.41 ATOM 151 OG SER D 204 79.553 -60.304 146.443 1.00129.47 ATOM 152 N HIS D 205 77.611 -61.406 148.896 1.00121.30 ATOM 153 CA HIS D 205 76.915 -60.964 150.127 1.00121.03 ATOM 154 C HIS D 205 76.577 -62.125 151.085 1.00122.73 ATOM 155 O HIS D 205 76.423 -61.899 152.288 1.00121.35 ATOM 156 CB HIS D 205 75.654 -60.130 149.801 1.00119.08 ATOM 157 CG HIS D 205 74.777 -59.855 150.989 1.00116.46 ATOM 158 ND1 HIS D 205 74.943 -58.761 151.813 1.00116.37 ATOM 159 CD2 HIS D 205 73.730 -60.549 151.495 1.00116.04 ATOM 160 CE1 HIS D 205 74.034 -58.795 152.774 1.00118.11 ATOM 161 NE2 HIS D 205 73.291 -59.875 152.609 1.00117.93 ATOM 162 N GLU D 206 76.487 -63.356 150.570 1.00126.79 ATOM 163 CA GLU D 206 76.307 -64.557 151.419 1.00128.95 ATOM 164 C GLU D 206 77.497 -64.844 152.365 1.00126.00 ATOM 165 O GLU D 206 77.408 -65.727 153.225 1.00120.89 ATOM 166 CB GLU D 206 75.975 -65.787 150.551 1.00134.80 ATOM 167 CG GLU D 206 74.543 -65.773 150.006 1.00139.90 ATOM 168 CD GLU D 206 74.426 -66.180 148.540 1.00143.66 ATOM 169 OE1 GLU D 206 75.124 -67.129 148.111 1.00144.73 ATOM 170 OE2 GLU D 206 73.619 -65.549 147.814 1.00142.71 ATOM 171 N GLN D 207 78.604 -64.115 152.185 1.00124.82 ATOM 172 CA GLN D 207 79.629 -63.970 153.223 1.00121.83 ATOM 173 C GLN D 207 79.105 -63.268 154.483 1.00118.10 ATOM 174 O GLN D 207 79.480 -63.663 155.583 1.00118.11 ATOM 175 CB GLN D 207 80.845 -63.180 152.706 1.00122.99 ATOM 176 CG GLN D 207 81.671 -63.869 151.626 1.00125.75 ATOM 177 CD GLN D 207 83.050 -63.245 151.454 1.00127.40 ATOM 178 OE1 GLN D 207 83.981 -63.565 152.195 1.00126.58 ATOM 179 NE2 GLN D 207 83.190 -62.360 150.468 1.00127.39 ATOM 180 N PHE D 208 78.248 -62.249 154.324 1.00115.81 ATOM 181 CA PHE D 208 77.922 -61.301 155.414 1.00117.73 ATOM 182 C PHE D 208 76.472 -61.332 155.967 1.00124.41 ATOM 183 O PHE D 208 75.897 -60.276 156.224 1.00123.99 ATOM 184 CB PHE D 208 78.231 -59.849 154.996 1.00116.44 ATOM 185 CG PHE D 208 79.397 -59.699 154.062 1.00115.71 ATOM 186 CD1 PHE D 208 80.649 -60.206 154.382 1.00114.81 ATOM 187 CD2 PHE D 208 79.248 -59.005 152.864 1.00116.90 ATOM 188 CE1 PHE D 208 81.718 -60.050 153.511 1.00114.28 ATOM 189 CE2 PHE D 208 80.316 -58.845 151.995 1.00115.49 ATOM 190 CZ PHE D 208 81.554 -59.370 152.318 1.00113.38 ATOM 191 N CYS D 209 75.893 -62.512 156.209 1.00134.79 ATOM 192 CA CYS D 209 74.691 -62.606 157.075 1.00141.67 ATOM 193 C CYS D 209 74.979 -63.262 158.457 1.00148.87 ATOM 194 O CYS D 209 74.135 -64.000 158.974 1.00141.31 ATOM 195 CB CYS D 209 73.537 -63.327 156.352 1.00140.52 ATOM 196 SG CYS D 209 73.283 -62.921 154.599 1.00140.25 ATOM 197 N PRO D 210 76.158 -62.978 159.063 1.00166.17 ATOM 198 CA PRO D 210 76.542 -63.423 160.393 1.00176.72 ATOM 199 C PRO D 210 76.309 -62.281 161.386 1.00190.96 ATOM 200 O PRO D 210 77.228 -61.828 162.085 1.00199.31 ATOM 201 CB PRO D 210 78.032 -63.711 160.214 1.00174.70 ATOM 202 CG PRO D 210 78.468 -62.662 159.235 1.00175.63 ATOM 203 CD PRO D 210 77.276 -62.243 158.460 1.00173.43 ATOM 204 N PHE D 211 75.062 -61.830 161.440 1.00205.17 ATOM 205 CA PHE D 211 74.699 -60.637 162.203 1.00214.13 ATOM 206 C PHE D 211 74.887 -60.771 163.717 1.00215.22 ATOM 207 O PHE D 211 73.992 -61.262 164.406 1.00223.31 ATOM 208 CB PHE D 211 73.246 -60.260 161.917 1.00220.66 ATOM 209 CG PHE D 211 72.781 -59.083 162.706 1.00225.24 ATOM 210 CD1 PHE D 211 73.124 -57.808 162.298 1.00225.98 ATOM 211 CD2 PHE D 211 72.033 -59.246 163.871 1.00228.72 ATOM 212 CE1 PHE D 211 72.710 -56.703 163.013 1.00229.58 ATOM 213 CE2 PHE D 211 71.645 -58.153 164.608 1.00233.32 ATOM 214 CZ PHE D 211 71.965 -56.880 164.163 1.00233.83 ATOM 215 N ALA D 212 76.031 -60.314 164.223 1.00204.39 ATOM 216 CA ALA D 212 76.337 -60.335 165.656 1.00189.63 ATOM 217 C ALA D 212 75.086 -60.060 166.521 1.00187.71 ATOM 218 O ALA D 212 74.053 -60.671 166.288 1.00197.81 ATOM 219 CB ALA D 212 77.466 -59.358 165.942 1.00181.94 ATOM 220 N ASN D 213 75.159 -59.164 167.494 1.00177.65 ATOM 221 CA ASN D 213 74.026 -58.844 168.373 1.00165.35 ATOM 222 C ASN D 213 73.834 -57.329 168.469 1.00148.07 ATOM 223 O ASN D 213 74.253 -56.681 169.431 1.00124.11 ATOM 224 CB ASN D 213 74.234 -59.445 169.774 1.00165.18 ATOM 225 CG ASN D 213 73.835 -60.909 169.854 1.00166.46 ATOM 226 OD1 ASN D 213 72.692 -61.272 169.573 1.00162.13 ATOM 227 ND2 ASN D 213 74.773 -61.755 170.263 1.00168.69 ATOM 228 ZN ZN D 305 72.302 -60.839 154.149 1.00118.15 TER