HEADER TRANSFERASE 31-DEC-69 5VO0 TITLE Structure of a TRAF6-Ubc13~Ub complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF receptor-associated factor 6; COMPND 3 CHAIN: A, D; COMPND 4 EC: 2.3.2.27; COMPND 5 FRAGMENT: residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.90 ANGSTORMS DBREF 5VO0 D 50 221 PDB 5VO0 5VO0 50 221 SEQRES 1 D 27 PHE ALA THR ALA PRO CYS PRO GLN CYS GLN GLU SER VAL SEQRES 2 D 27 PRO MET SER HIS LEU ASP GLU HIS LYS SER GLN HIS CYS SEQRES 3 D 27 LEU ATOM 1 N PHE D 158 52.532 -47.682 124.090 1.00116.39 ATOM 2 CA PHE D 158 53.185 -48.831 123.455 1.00115.13 ATOM 3 C PHE D 158 54.645 -48.573 123.036 1.00113.08 ATOM 4 O PHE D 158 55.208 -49.351 122.260 1.00114.88 ATOM 5 CB PHE D 158 52.367 -49.269 122.229 1.00116.49 ATOM 6 CG PHE D 158 50.957 -49.704 122.546 1.00118.18 ATOM 7 CD1 PHE D 158 49.929 -48.769 122.667 1.00118.77 ATOM 8 CD2 PHE D 158 50.647 -51.053 122.700 1.00121.87 ATOM 9 CE1 PHE D 158 48.627 -49.167 122.948 1.00119.74 ATOM 10 CE2 PHE D 158 49.347 -51.458 122.979 1.00123.62 ATOM 11 CZ PHE D 158 48.336 -50.514 123.103 1.00122.78 ATOM 12 N ALA D 159 55.267 -47.512 123.555 1.00110.27 ATOM 13 CA ALA D 159 56.644 -47.151 123.169 1.00112.16 ATOM 14 C ALA D 159 57.695 -48.090 123.761 1.00113.46 ATOM 15 O ALA D 159 57.415 -48.823 124.703 1.00111.63 ATOM 16 CB ALA D 159 56.955 -45.714 123.567 1.00112.37 ATOM 17 N THR D 160 58.903 -48.035 123.198 1.00119.72 ATOM 18 CA THR D 160 60.058 -48.828 123.662 1.00125.44 ATOM 19 C THR D 160 61.126 -47.893 124.248 1.00128.95 ATOM 20 O THR D 160 61.590 -46.972 123.572 1.00131.16 ATOM 21 CB THR D 160 60.656 -49.744 122.548 1.00129.00 ATOM 22 OG1 THR D 160 61.845 -50.389 123.027 1.00125.07 ATOM 23 CG2 THR D 160 60.985 -48.982 121.250 1.00131.88 ATOM 24 N ALA D 161 61.492 -48.129 125.510 1.00133.43 ATOM 25 CA ALA D 161 62.474 -47.308 126.231 1.00136.78 ATOM 26 C ALA D 161 63.585 -48.180 126.822 1.00136.39 ATOM 27 O ALA D 161 63.313 -49.021 127.684 1.00142.20 ATOM 28 CB ALA D 161 61.792 -46.523 127.338 1.00138.68 ATOM 29 N PRO D 162 64.831 -48.011 126.338 1.00133.16 ATOM 30 CA PRO D 162 66.014 -48.568 126.995 1.00130.93 ATOM 31 C PRO D 162 66.123 -48.271 128.496 1.00125.43 ATOM 32 O PRO D 162 65.747 -47.184 128.945 1.00117.65 ATOM 33 CB PRO D 162 67.151 -47.929 126.209 1.00135.23 ATOM 34 CG PRO D 162 66.615 -47.914 124.814 1.00136.08 ATOM 35 CD PRO D 162 65.137 -47.634 124.943 1.00134.71 ATOM 36 N CYS D 163 66.640 -49.254 129.236 1.00123.18 ATOM 37 CA CYS D 163 66.652 -49.259 130.706 1.00123.53 ATOM 38 C CYS D 163 67.722 -48.325 131.282 1.00129.50 ATOM 39 O CYS D 163 68.831 -48.241 130.737 1.00128.13 ATOM 40 CB CYS D 163 66.852 -50.694 131.248 1.00118.44 ATOM 41 SG CYS D 163 67.068 -50.881 133.046 1.00112.60 ATOM 42 N PRO D 164 67.385 -47.601 132.375 1.00135.21 ATOM 43 CA PRO D 164 68.403 -46.884 133.150 1.00134.64 ATOM 44 C PRO D 164 69.535 -47.787 133.656 1.00134.26 ATOM 45 O PRO D 164 70.700 -47.396 133.599 1.00135.07 ATOM 46 CB PRO D 164 67.607 -46.317 134.331 1.00134.15 ATOM 47 CG PRO D 164 66.234 -46.116 133.791 1.00134.72 ATOM 48 CD PRO D 164 66.017 -47.216 132.787 1.00135.57 ATOM 49 N GLN D 165 69.178 -48.981 134.123 1.00133.67 ATOM 50 CA GLN D 165 70.110 -49.889 134.779 1.00131.57 ATOM 51 C GLN D 165 70.692 -50.941 133.820 1.00132.68 ATOM 52 O GLN D 165 71.908 -51.127 133.797 1.00128.66 ATOM 53 CB GLN D 165 69.421 -50.524 135.997 1.00130.63 ATOM 54 CG GLN D 165 69.107 -49.495 137.088 1.00130.42 ATOM 55 CD GLN D 165 68.042 -49.936 138.082 1.00128.43 ATOM 56 OE1 GLN D 165 66.994 -50.471 137.705 1.00131.50 ATOM 57 NE2 GLN D 165 68.296 -49.682 139.364 1.00120.59 ATOM 58 N CYS D 166 69.853 -51.585 133.005 1.00136.54 ATOM 59 CA CYS D 166 70.315 -52.679 132.112 1.00136.69 ATOM 60 C CYS D 166 70.446 -52.354 130.613 1.00142.26 ATOM 61 O CYS D 166 70.816 -53.246 129.836 1.00144.74 ATOM 62 CB CYS D 166 69.423 -53.922 132.250 1.00129.15 ATOM 63 SG CYS D 166 68.911 -54.392 133.912 1.00124.79 ATOM 64 N GLN D 167 70.130 -51.119 130.198 1.00147.37 ATOM 65 CA GLN D 167 70.135 -50.713 128.769 1.00150.95 ATOM 66 C GLN D 167 69.619 -51.816 127.816 1.00152.79 ATOM 67 O GLN D 167 69.971 -51.850 126.640 1.00153.50 ATOM 68 CB GLN D 167 71.507 -50.144 128.317 1.00152.87 ATOM 69 CG GLN D 167 71.826 -48.752 128.854 1.00153.74 ATOM 70 CD GLN D 167 72.391 -48.787 130.259 1.00152.75 ATOM 71 OE1 GLN D 167 73.468 -49.333 130.488 1.00151.41 ATOM 72 NE2 GLN D 167 71.663 -48.212 131.209 1.00149.32 ATOM 73 N GLU D 168 68.789 -52.717 128.352 1.00151.65 ATOM 74 CA GLU D 168 67.953 -53.588 127.560 1.00148.12 ATOM 75 C GLU D 168 66.702 -52.762 127.309 1.00139.97 ATOM 76 O GLU D 168 66.188 -52.127 128.239 1.00135.27 ATOM 77 CB GLU D 168 67.559 -54.861 128.320 1.00153.20 ATOM 78 CG GLU D 168 68.692 -55.839 128.601 1.00157.71 ATOM 79 CD GLU D 168 68.271 -56.998 129.497 1.00160.66 ATOM 80 OE1 GLU D 168 67.078 -57.377 129.483 1.00162.73 ATOM 81 OE2 GLU D 168 69.141 -57.537 130.217 1.00160.34 ATOM 82 N SER D 169 66.220 -52.739 126.069 1.00135.22 ATOM 83 CA SER D 169 65.013 -51.971 125.748 1.00132.31 ATOM 84 C SER D 169 63.769 -52.695 126.274 1.00122.16 ATOM 85 O SER D 169 63.704 -53.927 126.287 1.00119.16 ATOM 86 CB SER D 169 64.924 -51.630 124.253 1.00136.94 ATOM 87 OG SER D 169 64.864 -52.792 123.447 1.00143.99 ATOM 88 N VAL D 170 62.812 -51.900 126.743 1.00112.08 ATOM 89 CA VAL D 170 61.693 -52.364 127.553 1.00104.25 ATOM 90 C VAL D 170 60.471 -51.494 127.255 1.00102.42 ATOM 91 O VAL D 170 60.606 -50.273 127.159 1.00105.87 ATOM 92 CB VAL D 170 62.059 -52.257 129.050 1.00101.48 ATOM 93 CG1 VAL D 170 60.832 -52.307 129.956 1.00101.79 ATOM 94 CG2 VAL D 170 63.040 -53.355 129.425 1.00102.52 ATOM 95 N PRO D 171 59.278 -52.108 127.117 1.00 98.64 ATOM 96 CA PRO D 171 58.069 -51.296 126.913 1.00101.24 ATOM 97 C PRO D 171 57.662 -50.468 128.143 1.00104.08 ATOM 98 O PRO D 171 57.733 -50.968 129.262 1.00104.34 ATOM 99 CB PRO D 171 56.989 -52.332 126.567 1.00 99.32 ATOM 100 CG PRO D 171 57.520 -53.637 127.039 1.00 97.90 ATOM 101 CD PRO D 171 59.009 -53.548 126.963 1.00 96.60 ATOM 102 N MET D 172 57.205 -49.234 127.913 1.00110.16 ATOM 103 CA MET D 172 56.879 -48.267 128.990 1.00116.86 ATOM 104 C MET D 172 55.930 -48.812 130.055 1.00112.54 ATOM 105 O MET D 172 56.027 -48.440 131.226 1.00115.21 ATOM 106 CB MET D 172 56.243 -46.993 128.416 1.00129.36 ATOM 107 CG MET D 172 57.125 -46.156 127.494 1.00139.59 ATOM 108 SD MET D 172 58.541 -45.354 128.281 1.00150.81 ATOM 109 CE MET D 172 59.061 -44.279 126.944 1.00150.86 ATOM 110 N SER D 173 55.001 -49.663 129.632 1.00107.49 ATOM 111 CA SER D 173 54.092 -50.384 130.535 1.00106.80 ATOM 112 C SER D 173 54.808 -51.228 131.600 1.00104.90 ATOM 113 O SER D 173 54.347 -51.340 132.743 1.00105.09 ATOM 114 CB SER D 173 53.192 -51.305 129.704 1.00106.27 ATOM 115 OG SER D 173 53.967 -52.097 128.812 1.00104.89 ATOM 116 N HIS D 174 55.940 -51.800 131.201 1.00102.00 ATOM 117 CA HIS D 174 56.646 -52.826 131.950 1.00102.64 ATOM 118 C HIS D 174 57.915 -52.332 132.681 1.00107.72 ATOM 119 O HIS D 174 58.465 -53.066 133.493 1.00112.82 ATOM 120 CB HIS D 174 56.987 -53.939 130.957 1.00101.05 ATOM 121 CG HIS D 174 57.595 -55.155 131.577 1.00 99.75 ATOM 122 ND1 HIS D 174 58.954 -55.287 131.764 1.00 99.56 ATOM 123 CD2 HIS D 174 57.038 -56.300 132.035 1.00 99.69 ATOM 124 CE1 HIS D 174 59.209 -56.460 132.314 1.00 99.85 ATOM 125 NE2 HIS D 174 58.063 -57.092 132.492 1.00101.80 ATOM 126 N LEU D 175 58.367 -51.103 132.407 1.00112.30 ATOM 127 CA LEU D 175 59.510 -50.489 133.114 1.00112.47 ATOM 128 C LEU D 175 59.169 -50.166 134.573 1.00117.75 ATOM 129 O LEU D 175 60.057 -50.057 135.425 1.00114.92 ATOM 130 CB LEU D 175 59.960 -49.216 132.387 1.00110.52 ATOM 131 CG LEU D 175 61.135 -48.418 132.949 1.00110.24 ATOM 132 CD1 LEU D 175 62.393 -49.268 133.036 1.00110.62 ATOM 133 CD2 LEU D 175 61.380 -47.192 132.079 1.00109.39 ATOM 134 N ASP D 176 57.874 -49.989 134.831 1.00128.03 ATOM 135 CA ASP D 176 57.316 -49.923 136.191 1.00134.91 ATOM 136 C ASP D 176 57.488 -51.268 136.929 1.00135.70 ATOM 137 O ASP D 176 57.854 -51.299 138.107 1.00132.68 ATOM 138 CB ASP D 176 55.814 -49.566 136.153 1.00136.66 ATOM 139 CG ASP D 176 55.505 -48.317 135.317 1.00134.50 ATOM 140 OD1 ASP D 176 56.400 -47.460 135.148 1.00133.49 ATOM 141 OD2 ASP D 176 54.360 -48.205 134.823 1.00130.00 ATOM 142 N GLU D 177 57.230 -52.365 136.210 1.00136.11 ATOM 143 CA GLU D 177 57.351 -53.745 136.725 1.00134.06 ATOM 144 C GLU D 177 58.786 -54.314 136.676 1.00124.75 ATOM 145 O GLU D 177 58.996 -55.492 136.977 1.00124.91 ATOM 146 CB GLU D 177 56.441 -54.683 135.907 1.00142.41 ATOM 147 CG GLU D 177 54.966 -54.283 135.816 1.00148.04 ATOM 148 CD GLU D 177 54.236 -54.939 134.648 1.00149.60 ATOM 149 OE1 GLU D 177 53.220 -54.370 134.190 1.00148.14 ATOM 150 OE2 GLU D 177 54.668 -56.020 134.190 1.00151.47 ATOM 151 N HIS D 178 59.755 -53.474 136.312 1.00115.60 ATOM 152 CA HIS D 178 61.131 -53.862 136.004 1.00111.72 ATOM 153 C HIS D 178 62.084 -53.417 137.156 1.00112.07 ATOM 154 O HIS D 178 63.328 -53.413 137.008 1.00107.58 ATOM 155 CB HIS D 178 61.431 -53.216 134.641 1.00109.69 ATOM 156 CG HIS D 178 62.753 -53.558 134.041 1.00109.24 ATOM 157 ND1 HIS D 178 62.991 -54.713 133.325 1.00106.48 ATOM 158 CD2 HIS D 178 63.887 -52.827 133.966 1.00112.88 ATOM 159 CE1 HIS D 178 64.239 -54.699 132.883 1.00109.92 ATOM 160 NE2 HIS D 178 64.809 -53.567 133.273 1.00112.51 ATOM 161 N LYS D 179 61.472 -53.036 138.290 1.00114.42 ATOM 162 CA LYS D 179 62.148 -52.870 139.585 1.00113.54 ATOM 163 C LYS D 179 61.937 -54.090 140.496 1.00110.23 ATOM 164 O LYS D 179 62.899 -54.628 141.041 1.00106.93 ATOM 165 CB LYS D 179 61.696 -51.574 140.301 1.00117.94 ATOM 166 CG LYS D 179 60.247 -51.506 140.797 1.00123.57 ATOM 167 CD LYS D 179 59.902 -50.132 141.371 1.00126.41 ATOM 168 CE LYS D 179 58.494 -50.086 141.963 1.00126.25 ATOM 169 NZ LYS D 179 57.412 -50.055 140.937 1.00124.11 ATOM 170 N SER D 180 60.687 -54.532 140.645 1.00112.24 ATOM 171 CA SER D 180 60.340 -55.607 141.584 1.00119.03 ATOM 172 C SER D 180 60.869 -56.956 141.084 1.00128.58 ATOM 173 O SER D 180 61.588 -57.657 141.806 1.00135.84 ATOM 174 CB SER D 180 58.821 -55.664 141.807 1.00116.27 ATOM 175 OG SER D 180 58.476 -56.607 142.810 1.00113.42 ATOM 176 N GLN D 181 60.506 -57.303 139.848 1.00135.53 ATOM 177 CA GLN D 181 61.115 -58.425 139.131 1.00135.51 ATOM 178 C GLN D 181 62.463 -57.927 138.646 1.00136.07 ATOM 179 O GLN D 181 62.535 -56.974 137.868 1.00135.20 ATOM 180 CB GLN D 181 60.237 -58.877 137.956 1.00136.65 ATOM 181 CG GLN D 181 60.900 -59.832 136.959 1.00139.48 ATOM 182 CD GLN D 181 61.112 -59.231 135.571 1.00144.69 ATOM 183 OE1 GLN D 181 60.270 -58.488 135.066 1.00152.01 ATOM 184 NE2 GLN D 181 62.228 -59.579 134.938 1.00146.14 ATOM 185 N HIS D 182 63.528 -58.581 139.088 1.00140.67 ATOM 186 CA HIS D 182 64.859 -58.018 138.906 1.00145.63 ATOM 187 C HIS D 182 65.285 -57.988 137.471 1.00140.66 ATOM 188 O HIS D 182 65.400 -59.013 136.799 1.00135.57 ATOM 189 CB HIS D 182 65.907 -58.747 139.729 1.00152.10 ATOM 190 CG HIS D 182 65.666 -58.645 141.195 1.00157.51 ATOM 191 ND1 HIS D 182 65.460 -57.438 141.828 1.00158.66 ATOM 192 CD2 HIS D 182 65.561 -59.599 142.147 1.00163.05 ATOM 193 CE1 HIS D 182 65.247 -57.655 143.113 1.00163.33 ATOM 194 NE2 HIS D 182 65.305 -58.957 143.332 1.00166.45 ATOM 195 N CYS D 183 65.478 -56.768 137.012 1.00136.47 ATOM 196 CA CYS D 183 66.344 -56.544 135.915 1.00133.04 ATOM 197 C CYS D 183 67.742 -56.692 136.489 1.00126.79 ATOM 198 O CYS D 183 68.011 -56.298 137.628 1.00117.29 ATOM 199 CB CYS D 183 66.045 -55.205 135.322 1.00135.26 ATOM 200 SG CYS D 183 66.601 -53.659 136.050 1.00139.45 ATOM 201 N LEU D 184 68.617 -57.304 135.702 1.00126.64 ATOM 202 CA LEU D 184 69.776 -58.011 136.259 1.00126.68 ATOM 203 C LEU D 184 70.717 -57.170 137.141 1.00126.26 ATOM 204 O LEU D 184 71.430 -57.744 137.980 1.00127.82 ATOM 205 CB LEU D 184 70.548 -58.747 135.148 1.00129.14 ATOM 206 CG LEU D 184 69.779 -59.858 134.408 1.00131.08 ATOM 207 CD1 LEU D 184 70.537 -60.306 133.166 1.00131.86 ATOM 208 CD2 LEU D 184 69.483 -61.051 135.309 1.00130.17 ATOM 209 ZN ZN D 304 66.974 -53.104 133.785 1.00110.78 TER