HEADER transcription/RNA 31-DEC-69 5VT0 TITLE Escherichia coli 6S RNA derivative in complex with Escherichia coli TITLE 2 RNA polymerase sigma70-holoenzyme COMPND MOL_ID: 5; COMPND 2 MOLECULE: RNA polymerase sigma factor RpoD; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 5VT0 L 94 613 UNP P00579 RPOD_ECOLI 94 613 SEQRES 1 L 32 ARG THR ILE ARG ILE PRO VAL HIS MET ILE GLU THR ILE SEQRES 2 L 32 ASN LYS LEU ASN ARG ILE SER ARG GLN MET LEU GLN GLU SEQRES 3 L 32 MET GLY ARG GLU PRO THR ATOM 1 N ARG L 448 139.943 147.532 179.240 1.00 57.92 ATOM 2 CA ARG L 448 140.700 147.030 178.104 1.00 57.92 ATOM 3 C ARG L 448 140.167 147.669 176.830 1.00 57.92 ATOM 4 O ARG L 448 138.979 147.991 176.749 1.00 57.92 ATOM 5 CB ARG L 448 140.591 145.511 178.013 1.00 57.92 ATOM 6 CG ARG L 448 141.153 144.789 179.220 1.00 57.92 ATOM 7 CD ARG L 448 142.646 144.928 179.248 1.00 57.92 ATOM 8 NE ARG L 448 143.233 144.247 178.107 1.00 57.92 ATOM 9 CZ ARG L 448 143.624 142.981 178.130 1.00 57.92 ATOM 10 NH1 ARG L 448 143.515 142.275 179.245 1.00 57.92 ATOM 11 NH2 ARG L 448 144.145 142.430 177.046 1.00 57.92 ATOM 12 N THR L 449 141.047 147.878 175.847 1.00 58.24 ATOM 13 CA THR L 449 140.602 148.389 174.554 1.00 58.24 ATOM 14 C THR L 449 139.711 147.375 173.859 1.00 58.24 ATOM 15 O THR L 449 138.529 147.629 173.610 1.00 58.24 ATOM 16 CB THR L 449 141.795 148.709 173.665 1.00 58.24 ATOM 17 OG1 THR L 449 142.473 147.491 173.351 1.00 58.24 ATOM 18 CG2 THR L 449 142.744 149.647 174.358 1.00 58.24 ATOM 19 N ILE L 450 140.266 146.218 173.540 1.00 55.57 ATOM 20 CA ILE L 450 139.477 145.088 173.084 1.00 55.57 ATOM 21 C ILE L 450 138.807 144.462 174.304 1.00 55.57 ATOM 22 O ILE L 450 139.475 144.044 175.254 1.00 55.57 ATOM 23 CB ILE L 450 140.348 144.090 172.307 1.00 55.57 ATOM 24 CG1 ILE L 450 141.664 143.792 173.027 1.00 55.57 ATOM 25 CG2 ILE L 450 140.707 144.660 170.983 1.00 55.57 ATOM 26 CD1 ILE L 450 142.429 142.641 172.443 1.00 55.57 ATOM 27 N ARG L 451 137.480 144.465 174.325 1.00 63.08 ATOM 28 CA ARG L 451 136.781 144.013 175.521 1.00 63.08 ATOM 29 C ARG L 451 136.769 142.497 175.537 1.00 63.08 ATOM 30 O ARG L 451 136.067 141.867 174.744 1.00 63.08 ATOM 31 CB ARG L 451 135.360 144.554 175.594 1.00 63.08 ATOM 32 CG ARG L 451 134.683 144.162 176.894 1.00 63.08 ATOM 33 CD ARG L 451 133.279 144.705 177.003 1.00 63.08 ATOM 34 NE ARG L 451 132.407 144.156 175.976 1.00 63.08 ATOM 35 CZ ARG L 451 131.777 142.992 176.074 1.00 63.08 ATOM 36 NH1 ARG L 451 131.915 142.248 177.160 1.00 63.08 ATOM 37 NH2 ARG L 451 131.005 142.575 175.083 1.00 63.08 ATOM 38 N ILE L 452 137.547 141.911 176.437 1.00 64.53 ATOM 39 CA ILE L 452 137.588 140.462 176.571 1.00 64.53 ATOM 40 C ILE L 452 136.708 140.066 177.752 1.00 64.53 ATOM 41 O ILE L 452 136.646 140.800 178.748 1.00 64.53 ATOM 42 CB ILE L 452 139.037 139.978 176.689 1.00 64.53 ATOM 43 CG1 ILE L 452 139.773 140.733 177.777 1.00 64.53 ATOM 44 CG2 ILE L 452 139.745 140.195 175.391 1.00 64.53 ATOM 45 CD1 ILE L 452 141.154 140.221 178.002 1.00 64.53 ATOM 46 N PRO L 453 135.988 138.949 177.673 1.00 72.85 ATOM 47 CA PRO L 453 134.907 138.691 178.623 1.00 72.85 ATOM 48 C PRO L 453 135.433 138.237 179.973 1.00 72.85 ATOM 49 O PRO L 453 136.636 138.190 180.225 1.00 72.85 ATOM 50 CB PRO L 453 134.106 137.580 177.951 1.00 72.85 ATOM 51 CG PRO L 453 134.540 137.590 176.533 1.00 72.85 ATOM 52 CD PRO L 453 135.968 137.974 176.582 1.00 72.85 ATOM 53 N VAL L 454 134.493 137.867 180.842 1.00 72.77 ATOM 54 CA VAL L 454 134.817 137.643 182.249 1.00 72.77 ATOM 55 C VAL L 454 135.601 136.348 182.422 1.00 72.77 ATOM 56 O VAL L 454 136.661 136.327 183.059 1.00 72.77 ATOM 57 CB VAL L 454 133.537 137.643 183.099 1.00 72.77 ATOM 58 CG1 VAL L 454 133.867 137.376 184.553 1.00 72.77 ATOM 59 CG2 VAL L 454 132.805 138.961 182.954 1.00 72.77 ATOM 60 N HIS L 455 135.092 135.252 181.851 1.00 77.15 ATOM 61 CA HIS L 455 135.734 133.951 182.026 1.00 77.15 ATOM 62 C HIS L 455 137.081 133.895 181.321 1.00 77.15 ATOM 63 O HIS L 455 138.001 133.200 181.770 1.00 77.15 ATOM 64 CB HIS L 455 134.818 132.844 181.512 1.00 77.15 ATOM 65 CG HIS L 455 134.523 132.938 180.050 1.00 77.15 ATOM 66 ND1 HIS L 455 135.348 132.397 179.090 1.00 77.15 ATOM 67 CD2 HIS L 455 133.497 133.515 179.384 1.00 77.15 ATOM 68 CE1 HIS L 455 134.840 132.632 177.894 1.00 77.15 ATOM 69 NE2 HIS L 455 133.717 133.309 178.045 1.00 77.15 ATOM 70 N MET L 456 137.218 134.642 180.227 1.00 76.68 ATOM 71 CA MET L 456 138.497 134.750 179.541 1.00 76.68 ATOM 72 C MET L 456 139.537 135.438 180.417 1.00 76.68 ATOM 73 O MET L 456 140.698 135.015 180.469 1.00 76.68 ATOM 74 CB MET L 456 138.289 135.510 178.239 1.00 76.68 ATOM 75 CG MET L 456 139.460 135.551 177.317 1.00 76.68 ATOM 76 SD MET L 456 139.885 133.952 176.641 1.00 76.68 ATOM 77 CE MET L 456 141.487 134.373 175.991 1.00 76.68 ATOM 78 N ILE L 457 139.126 136.472 181.153 1.00 73.44 ATOM 79 CA ILE L 457 140.046 137.150 182.058 1.00 73.44 ATOM 80 C ILE L 457 140.339 136.280 183.273 1.00 73.44 ATOM 81 O ILE L 457 141.449 136.310 183.820 1.00 73.44 ATOM 82 CB ILE L 457 139.478 138.532 182.427 1.00 73.44 ATOM 83 CG1 ILE L 457 139.503 139.401 181.187 1.00 73.44 ATOM 84 CG2 ILE L 457 140.287 139.239 183.495 1.00 73.44 ATOM 85 CD1 ILE L 457 138.823 140.701 181.342 1.00 73.44 ATOM 86 N GLU L 458 139.377 135.449 183.679 1.00 75.13 ATOM 87 CA GLU L 458 139.649 134.467 184.725 1.00 75.13 ATOM 88 C GLU L 458 140.708 133.465 184.279 1.00 75.13 ATOM 89 O GLU L 458 141.596 133.092 185.054 1.00 75.13 ATOM 90 CB GLU L 458 138.364 133.745 185.119 1.00 75.13 ATOM 91 CG GLU L 458 137.371 134.599 185.876 1.00 75.13 ATOM 92 CD GLU L 458 136.125 133.824 186.255 1.00 75.13 ATOM 93 OE1 GLU L 458 135.990 132.666 185.807 1.00 75.13 ATOM 94 OE2 GLU L 458 135.286 134.365 187.006 1.00 75.13 ATOM 95 N THR L 459 140.652 133.058 183.009 1.00 68.12 ATOM 96 CA THR L 459 141.655 132.146 182.467 1.00 68.12 ATOM 97 C THR L 459 143.024 132.813 182.392 1.00 68.12 ATOM 98 O THR L 459 144.047 132.194 182.710 1.00 68.12 ATOM 99 CB THR L 459 141.212 131.657 181.090 1.00 68.12 ATOM 100 OG1 THR L 459 139.923 131.048 181.202 1.00 68.12 ATOM 101 CG2 THR L 459 142.173 130.634 180.547 1.00 68.12 ATOM 102 N ILE L 460 143.053 134.094 182.010 1.00 70.06 ATOM 103 CA ILE L 460 144.316 134.836 181.933 1.00 70.06 ATOM 104 C ILE L 460 144.933 134.999 183.319 1.00 70.06 ATOM 105 O ILE L 460 146.148 134.835 183.507 1.00 70.06 ATOM 106 CB ILE L 460 144.093 136.195 181.249 1.00 70.06 ATOM 107 CG1 ILE L 460 143.708 135.983 179.794 1.00 70.06 ATOM 108 CG2 ILE L 460 145.334 137.048 181.310 1.00 70.06 ATOM 109 CD1 ILE L 460 143.063 137.177 179.182 1.00 70.06 ATOM 110 N ASN L 461 144.099 135.284 184.319 1.00 71.74 ATOM 111 CA ASN L 461 144.610 135.433 185.674 1.00 71.74 ATOM 112 C ASN L 461 145.048 134.097 186.259 1.00 71.74 ATOM 113 O ASN L 461 146.004 134.053 187.042 1.00 71.74 ATOM 114 CB ASN L 461 143.563 136.105 186.554 1.00 71.74 ATOM 115 CG ASN L 461 143.397 137.567 186.221 1.00 71.74 ATOM 116 OD1 ASN L 461 144.376 138.270 185.985 1.00 71.74 ATOM 117 ND2 ASN L 461 142.160 138.035 186.198 1.00 71.74 ATOM 118 N LYS L 462 144.399 132.998 185.860 1.00 73.27 ATOM 119 CA LYS L 462 144.899 131.680 186.237 1.00 73.27 ATOM 120 C LYS L 462 146.254 131.402 185.610 1.00 73.27 ATOM 121 O LYS L 462 147.131 130.822 186.258 1.00 73.27 ATOM 122 CB LYS L 462 143.917 130.584 185.842 1.00 73.27 ATOM 123 CG LYS L 462 142.717 130.441 186.744 1.00 73.27 ATOM 124 CD LYS L 462 141.821 129.332 186.228 1.00 73.27 ATOM 125 CE LYS L 462 142.496 127.983 186.382 1.00 73.27 ATOM 126 NZ LYS L 462 141.609 126.871 185.962 1.00 73.27 ATOM 127 N LEU L 463 146.444 131.808 184.350 1.00 74.11 ATOM 128 CA LEU L 463 147.737 131.597 183.704 1.00 74.11 ATOM 129 C LEU L 463 148.835 132.396 184.381 1.00 74.11 ATOM 130 O LEU L 463 149.933 131.879 184.601 1.00 74.11 ATOM 131 CB LEU L 463 147.688 131.964 182.227 1.00 74.11 ATOM 132 CG LEU L 463 146.877 131.096 181.287 1.00 74.11 ATOM 133 CD1 LEU L 463 147.094 131.603 179.895 1.00 74.11 ATOM 134 CD2 LEU L 463 147.299 129.664 181.402 1.00 74.11 ATOM 135 N ASN L 464 148.552 133.648 184.734 1.00 74.92 ATOM 136 CA ASN L 464 149.564 134.444 185.420 1.00 74.92 ATOM 137 C ASN L 464 149.841 133.924 186.826 1.00 74.92 ATOM 138 O ASN L 464 150.996 133.925 187.257 1.00 74.92 ATOM 139 CB ASN L 464 149.158 135.914 185.451 1.00 74.92 ATOM 140 CG ASN L 464 149.214 136.556 184.082 1.00 74.92 ATOM 141 OD1 ASN L 464 148.194 136.957 183.524 1.00 74.92 ATOM 142 ND2 ASN L 464 150.415 136.650 183.527 1.00 74.92 ATOM 143 N ARG L 465 148.826 133.406 187.519 1.00 84.32 ATOM 144 CA ARG L 465 149.035 132.861 188.862 1.00 84.32 ATOM 145 C ARG L 465 149.851 131.571 188.828 1.00 84.32 ATOM 146 O ARG L 465 150.796 131.397 189.604 1.00 84.32 ATOM 147 CB ARG L 465 147.685 132.626 189.539 1.00 84.32 ATOM 148 CG ARG L 465 147.788 132.199 190.977 1.00 84.32 ATOM 149 CD ARG L 465 146.408 132.020 191.567 1.00 84.32 ATOM 150 NE ARG L 465 146.467 131.635 192.971 1.00 84.32 ATOM 151 CZ ARG L 465 145.399 131.396 193.722 1.00 84.32 ATOM 152 NH1 ARG L 465 144.185 131.492 193.198 1.00 84.32 ATOM 153 NH2 ARG L 465 145.545 131.055 194.994 1.00 84.32 ATOM 154 N ILE L 466 149.498 130.655 187.924 1.00 84.50 ATOM 155 CA ILE L 466 150.224 129.392 187.820 1.00 84.50 ATOM 156 C ILE L 466 151.626 129.608 187.265 1.00 84.50 ATOM 157 O ILE L 466 152.587 128.983 187.726 1.00 84.50 ATOM 158 CB ILE L 466 149.395 128.370 187.014 1.00 84.50 ATOM 159 CG1 ILE L 466 148.463 127.597 187.955 1.00 84.50 ATOM 160 CG2 ILE L 466 150.255 127.419 186.190 1.00 84.50 ATOM 161 CD1 ILE L 466 147.134 128.231 188.227 1.00 84.50 ATOM 162 N SER L 467 151.794 130.549 186.336 1.00 86.55 ATOM 163 CA SER L 467 153.141 130.848 185.873 1.00 86.55 ATOM 164 C SER L 467 153.933 131.670 186.879 1.00 86.55 ATOM 165 O SER L 467 155.154 131.777 186.742 1.00 86.55 ATOM 166 CB SER L 467 153.098 131.572 184.534 1.00 86.55 ATOM 167 OG SER L 467 154.405 131.913 184.118 1.00 86.55 ATOM 168 N ARG L 468 153.272 132.267 187.870 1.00 88.34 ATOM 169 CA ARG L 468 153.989 132.835 189.003 1.00 88.34 ATOM 170 C ARG L 468 154.430 131.747 189.969 1.00 88.34 ATOM 171 O ARG L 468 155.516 131.832 190.549 1.00 88.34 ATOM 172 CB ARG L 468 153.106 133.864 189.711 1.00 88.34 ATOM 173 CG ARG L 468 153.739 134.554 190.907 1.00 88.34 ATOM 174 CD ARG L 468 152.815 135.626 191.484 1.00 88.34 ATOM 175 NE ARG L 468 151.581 135.098 192.061 1.00 88.34 ATOM 176 CZ ARG L 468 151.461 134.670 193.315 1.00 88.34 ATOM 177 NH1 ARG L 468 152.502 134.709 194.134 1.00 88.34 ATOM 178 NH2 ARG L 468 150.296 134.210 193.751 1.00 88.34 ATOM 179 N GLN L 469 153.601 130.719 190.151 1.00 91.48 ATOM 180 CA GLN L 469 153.961 129.647 191.075 1.00 91.48 ATOM 181 C GLN L 469 155.052 128.755 190.501 1.00 91.48 ATOM 182 O GLN L 469 155.978 128.358 191.215 1.00 91.48 ATOM 183 CB GLN L 469 152.739 128.811 191.437 1.00 91.48 ATOM 184 CG GLN L 469 151.759 129.512 192.346 1.00 91.48 ATOM 185 CD GLN L 469 150.611 128.614 192.741 1.00 91.48 ATOM 186 OE1 GLN L 469 150.511 127.478 192.277 1.00 91.48 ATOM 187 NE2 GLN L 469 149.743 129.111 193.612 1.00 91.48 ATOM 188 N MET L 470 154.962 128.427 189.213 1.00 97.36 ATOM 189 CA MET L 470 155.902 127.479 188.627 1.00 97.36 ATOM 190 C MET L 470 157.271 128.097 188.416 1.00 97.36 ATOM 191 O MET L 470 158.267 127.371 188.333 1.00 97.36 ATOM 192 CB MET L 470 155.371 126.953 187.299 1.00 97.36 ATOM 193 CG MET L 470 154.139 126.103 187.422 1.00 97.36 ATOM 194 SD MET L 470 153.593 125.564 185.806 1.00 97.36 ATOM 195 CE MET L 470 154.881 124.382 185.445 1.00 97.36 ATOM 196 N LEU L 471 157.337 129.426 188.322 1.00 97.82 ATOM 197 CA LEU L 471 158.599 130.096 188.029 1.00 97.82 ATOM 198 C LEU L 471 159.565 129.979 189.195 1.00 97.82 ATOM 199 O LEU L 471 160.785 129.976 189.002 1.00 97.82 ATOM 200 CB LEU L 471 158.330 131.559 187.679 1.00 97.82 ATOM 201 CG LEU L 471 159.421 132.495 187.170 1.00 97.82 ATOM 202 CD1 LEU L 471 158.804 133.438 186.161 1.00 97.82 ATOM 203 CD2 LEU L 471 159.999 133.301 188.307 1.00 97.82 ATOM 204 N GLN L 472 159.041 129.877 190.408 1.00 97.49 ATOM 205 CA GLN L 472 159.859 129.627 191.582 1.00 97.49 ATOM 206 C GLN L 472 159.936 128.151 191.933 1.00 97.49 ATOM 207 O GLN L 472 160.605 127.793 192.905 1.00 97.49 ATOM 208 CB GLN L 472 159.317 130.427 192.760 1.00 97.49 ATOM 209 CG GLN L 472 159.504 131.914 192.581 1.00 97.49 ATOM 210 CD GLN L 472 158.810 132.705 193.656 1.00 97.49 ATOM 211 OE1 GLN L 472 158.084 132.145 194.473 1.00 97.49 ATOM 212 NE2 GLN L 472 159.028 134.015 193.670 1.00 97.49 ATOM 213 N GLU L 473 159.271 127.290 191.170 1.00101.75 ATOM 214 CA GLU L 473 159.393 125.845 191.371 1.00101.75 ATOM 215 C GLU L 473 160.446 125.298 190.414 1.00101.75 ATOM 216 O GLU L 473 161.444 124.715 190.845 1.00101.75 ATOM 217 CB GLU L 473 158.035 125.164 191.185 1.00101.75 ATOM 218 CG GLU L 473 157.962 123.736 191.711 1.00101.75 ATOM 219 CD GLU L 473 158.396 122.695 190.696 1.00101.75 ATOM 220 OE1 GLU L 473 158.215 122.932 189.484 1.00101.75 ATOM 221 OE2 GLU L 473 158.920 121.642 191.110 1.00101.75 ATOM 222 N MET L 474 160.236 125.488 189.110 1.00109.62 ATOM 223 CA MET L 474 161.213 125.017 188.133 1.00109.62 ATOM 224 C MET L 474 162.457 125.894 188.134 1.00109.62 ATOM 225 O MET L 474 163.559 125.428 188.444 1.00109.62 ATOM 226 CB MET L 474 160.592 124.970 186.740 1.00109.62 ATOM 227 CG MET L 474 159.534 123.910 186.589 1.00109.62 ATOM 228 SD MET L 474 160.189 122.273 186.959 1.00109.62 ATOM 229 CE MET L 474 161.324 122.043 185.596 1.00109.62 ATOM 230 N GLY L 475 162.303 127.168 187.792 1.00105.58 ATOM 231 CA GLY L 475 163.373 128.129 187.906 1.00105.58 ATOM 232 C GLY L 475 163.619 128.971 186.677 1.00105.58 ATOM 233 O GLY L 475 164.014 130.134 186.820 1.00105.58 ATOM 234 N ARG L 476 163.399 128.442 185.475 1.00110.89 ATOM 235 CA ARG L 476 163.775 129.190 184.268 1.00110.89 ATOM 236 C ARG L 476 162.655 130.146 183.852 1.00110.89 ATOM 237 O ARG L 476 162.828 131.366 183.910 1.00110.89 ATOM 238 CB ARG L 476 164.215 128.208 183.166 1.00110.89 ATOM 239 CG ARG L 476 163.265 127.036 182.809 1.00110.89 ATOM 240 CD ARG L 476 163.842 126.055 181.806 1.00110.89 ATOM 241 NE ARG L 476 162.799 125.160 181.308 1.00110.89 ATOM 242 CZ ARG L 476 162.399 124.049 181.918 1.00110.89 ATOM 243 NH1 ARG L 476 162.953 123.675 183.061 1.00110.89 ATOM 244 NH2 ARG L 476 161.437 123.310 181.382 1.00110.89 ATOM 245 N GLU L 477 161.512 129.600 183.447 1.00112.73 ATOM 246 CA GLU L 477 160.161 130.107 183.270 1.00112.73 ATOM 247 C GLU L 477 159.417 128.888 182.748 1.00112.73 ATOM 248 O GLU L 477 160.051 128.002 182.160 1.00112.73 ATOM 249 CB GLU L 477 160.077 131.303 182.314 1.00112.73 ATOM 250 CG GLU L 477 160.527 131.035 180.898 1.00112.73 ATOM 251 CD GLU L 477 160.489 132.287 180.044 1.00112.73 ATOM 252 OE1 GLU L 477 160.096 133.349 180.569 1.00112.73 ATOM 253 OE2 GLU L 477 160.861 132.211 178.854 1.00112.73 ATOM 254 N PRO L 478 158.111 128.771 182.940 1.00105.65 ATOM 255 CA PRO L 478 157.425 127.581 182.433 1.00105.65 ATOM 256 C PRO L 478 157.167 127.684 180.939 1.00105.65 ATOM 257 O PRO L 478 156.727 128.717 180.431 1.00105.65 ATOM 258 CB PRO L 478 156.123 127.556 183.235 1.00105.65 ATOM 259 CG PRO L 478 155.879 128.968 183.581 1.00105.65 ATOM 260 CD PRO L 478 157.227 129.595 183.781 1.00105.65 ATOM 261 N THR L 479 157.467 126.639 180.258 1.00104.37 ATOM 262 CA THR L 479 157.024 126.505 178.883 1.00104.37 ATOM 263 C THR L 479 155.545 126.126 178.879 1.00104.37 ATOM 264 O THR L 479 155.038 125.585 179.870 1.00104.37 ATOM 265 CB THR L 479 157.864 125.443 178.157 1.00104.37 ATOM 266 OG1 THR L 479 157.546 125.411 176.761 1.00104.37 ATOM 267 CG2 THR L 479 157.665 124.058 178.747 1.00104.37 TER