HEADER DNA BINDING PROTEIN 31-DEC-69 5W1R TITLE Cryo-EM structure of DNAPKcs COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-dependent protein kinase catalytic subunit; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.11.1; EXPDTA ELECTRON MICROSCOPY DBREF 5W1R A 1 4128 UNP P78527 PRKDC_HUMAN 1 4128 SEQRES 1 A 31 GLY LEU SER GLU GLU THR GLN VAL LYS CYS LEU MET ASP SEQRES 2 A 31 GLN ALA THR ASP PRO ASN ILE LEU GLY ARG THR TRP GLU SEQRES 3 A 31 GLY TRP GLU PRO TRP ATOM 1 N GLY A4097 73.419 74.998 162.175 1.00227.96 ATOM 2 CA GLY A4097 74.591 74.983 163.028 1.00227.96 ATOM 3 C GLY A4097 75.804 75.621 162.384 1.00227.96 ATOM 4 O GLY A4097 76.186 76.734 162.754 1.00227.96 ATOM 5 N LEU A4098 76.422 74.936 161.420 1.00226.39 ATOM 6 CA LEU A4098 77.616 75.473 160.777 1.00226.39 ATOM 7 C LEU A4098 77.834 74.840 159.405 1.00226.39 ATOM 8 O LEU A4098 77.470 73.685 159.167 1.00226.39 ATOM 9 CB LEU A4098 78.864 75.281 161.647 1.00226.39 ATOM 10 CG LEU A4098 80.109 75.973 161.085 1.00226.39 ATOM 11 CD1 LEU A4098 79.891 77.478 161.000 1.00226.39 ATOM 12 CD2 LEU A4098 81.343 75.650 161.909 1.00226.39 ATOM 13 N SER A4099 78.416 75.637 158.507 1.00209.30 ATOM 14 CA SER A4099 78.970 75.247 157.217 1.00209.30 ATOM 15 C SER A4099 79.709 76.455 156.659 1.00209.30 ATOM 16 O SER A4099 79.222 77.579 156.777 1.00209.30 ATOM 17 CB SER A4099 77.880 74.782 156.246 1.00209.30 ATOM 18 OG SER A4099 76.684 75.510 156.425 1.00209.30 ATOM 19 N GLU A4100 80.885 76.231 156.069 1.00209.26 ATOM 20 CA GLU A4100 81.751 77.359 155.715 1.00209.26 ATOM 21 C GLU A4100 81.246 78.123 154.495 1.00209.26 ATOM 22 O GLU A4100 80.808 79.269 154.616 1.00209.26 ATOM 23 CB GLU A4100 83.200 76.896 155.527 1.00209.26 ATOM 24 CG GLU A4100 83.413 75.583 154.818 1.00209.26 ATOM 25 CD GLU A4100 83.312 74.411 155.766 1.00209.26 ATOM 26 OE1 GLU A4100 83.073 74.645 156.971 1.00209.26 ATOM 27 OE2 GLU A4100 83.481 73.262 155.307 1.00209.26 ATOM 28 N GLU A4101 81.298 77.517 153.312 1.00196.70 ATOM 29 CA GLU A4101 80.859 78.212 152.109 1.00196.70 ATOM 30 C GLU A4101 79.486 77.766 151.624 1.00196.70 ATOM 31 O GLU A4101 78.945 78.388 150.705 1.00196.70 ATOM 32 CB GLU A4101 81.893 78.038 150.986 1.00196.70 ATOM 33 CG GLU A4101 81.587 76.914 150.008 1.00196.70 ATOM 34 CD GLU A4101 81.482 75.561 150.690 1.00196.70 ATOM 35 OE1 GLU A4101 82.079 75.386 151.775 1.00196.70 ATOM 36 OE2 GLU A4101 80.776 74.681 150.152 1.00196.70 ATOM 37 N THR A4102 78.913 76.715 152.220 1.00201.36 ATOM 38 CA THR A4102 77.568 76.276 151.855 1.00201.36 ATOM 39 C THR A4102 76.570 77.418 151.948 1.00201.36 ATOM 40 O THR A4102 75.785 77.651 151.024 1.00201.36 ATOM 41 CB THR A4102 77.115 75.125 152.759 1.00201.36 ATOM 42 OG1 THR A4102 77.820 73.925 152.420 1.00201.36 ATOM 43 CG2 THR A4102 75.609 74.892 152.610 1.00201.36 ATOM 44 N GLN A4103 76.606 78.154 153.064 1.00212.91 ATOM 45 CA GLN A4103 75.639 79.220 153.315 1.00212.91 ATOM 46 C GLN A4103 75.547 80.200 152.157 1.00212.91 ATOM 47 O GLN A4103 74.492 80.801 151.936 1.00212.91 ATOM 48 CB GLN A4103 75.998 79.974 154.600 1.00212.91 ATOM 49 CG GLN A4103 77.463 80.362 154.719 1.00212.91 ATOM 50 CD GLN A4103 77.754 81.113 155.999 1.00212.91 ATOM 51 OE1 GLN A4103 76.874 81.771 156.544 1.00212.91 ATOM 52 NE2 GLN A4103 78.983 81.008 156.495 1.00212.91 ATOM 53 N VAL A4104 76.624 80.353 151.391 1.00206.49 ATOM 54 CA VAL A4104 76.603 81.284 150.273 1.00206.49 ATOM 55 C VAL A4104 75.876 80.685 149.082 1.00206.49 ATOM 56 O VAL A4104 75.074 81.363 148.431 1.00206.49 ATOM 57 CB VAL A4104 78.030 81.692 149.895 1.00206.49 ATOM 58 CG1 VAL A4104 77.969 82.956 149.074 1.00206.49 ATOM 59 CG2 VAL A4104 78.889 81.840 151.127 1.00206.49 ATOM 60 N LYS A4105 76.172 79.420 148.766 1.00219.21 ATOM 61 CA LYS A4105 75.518 78.710 147.671 1.00219.21 ATOM 62 C LYS A4105 74.018 78.970 147.698 1.00219.21 ATOM 63 O LYS A4105 73.426 79.416 146.711 1.00219.21 ATOM 64 CB LYS A4105 75.816 77.209 147.788 1.00219.21 ATOM 65 CG LYS A4105 75.621 76.395 146.514 1.00219.21 ATOM 66 CD LYS A4105 76.336 76.985 145.295 1.00219.21 ATOM 67 CE LYS A4105 77.833 77.195 145.535 1.00219.21 ATOM 68 NZ LYS A4105 78.400 78.223 144.621 1.00219.21 ATOM 69 N CYS A4106 73.403 78.751 148.860 1.00224.17 ATOM 70 CA CYS A4106 71.994 79.079 149.045 1.00224.17 ATOM 71 C CYS A4106 71.763 80.581 149.155 1.00224.17 ATOM 72 O CYS A4106 70.691 81.061 148.772 1.00224.17 ATOM 73 CB CYS A4106 71.458 78.389 150.295 1.00224.17 ATOM 74 SG CYS A4106 72.679 78.259 151.606 1.00224.17 ATOM 75 N LEU A4107 72.728 81.336 149.696 1.00212.67 ATOM 76 CA LEU A4107 72.555 82.784 149.799 1.00212.67 ATOM 77 C LEU A4107 72.238 83.382 148.434 1.00212.67 ATOM 78 O LEU A4107 71.254 84.111 148.279 1.00212.67 ATOM 79 CB LEU A4107 73.798 83.440 150.405 1.00212.67 ATOM 80 CG LEU A4107 73.546 84.668 151.292 1.00212.67 ATOM 81 CD1 LEU A4107 73.049 84.250 152.647 1.00212.67 ATOM 82 CD2 LEU A4107 74.803 85.498 151.431 1.00212.67 ATOM 83 N MET A4108 73.052 83.061 147.423 1.00218.09 ATOM 84 CA MET A4108 72.698 83.412 146.050 1.00218.09 ATOM 85 C MET A4108 71.355 82.808 145.663 1.00218.09 ATOM 86 O MET A4108 70.544 83.461 144.998 1.00218.09 ATOM 87 CB MET A4108 73.792 82.948 145.084 1.00186.96 ATOM 88 N ASP A4109 71.096 81.570 146.092 1.00232.85 ATOM 89 CA ASP A4109 69.841 80.904 145.762 1.00232.85 ATOM 90 C ASP A4109 68.649 81.636 146.361 1.00232.85 ATOM 91 O ASP A4109 67.714 82.006 145.644 1.00232.85 ATOM 92 CB ASP A4109 69.871 79.456 146.248 1.00232.85 ATOM 93 CG ASP A4109 68.838 78.594 145.563 1.00232.85 ATOM 94 OD1 ASP A4109 67.719 79.084 145.303 1.00232.85 ATOM 95 OD2 ASP A4109 69.160 77.424 145.273 1.00232.85 ATOM 96 N GLN A4110 68.672 81.877 147.671 1.00231.21 ATOM 97 CA GLN A4110 67.484 82.383 148.346 1.00231.21 ATOM 98 C GLN A4110 67.205 83.828 147.957 1.00231.21 ATOM 99 O GLN A4110 66.943 84.681 148.811 1.00231.21 ATOM 100 CB GLN A4110 67.627 82.241 149.860 1.00231.21 ATOM 101 CG GLN A4110 67.448 80.809 150.305 1.00231.21 ATOM 102 CD GLN A4110 65.999 80.388 150.347 1.00231.21 ATOM 103 OE1 GLN A4110 65.178 80.833 149.545 1.00231.21 ATOM 104 NE2 GLN A4110 65.670 79.533 151.294 1.00231.21 ATOM 105 N ALA A4111 67.239 84.100 146.655 1.00234.80 ATOM 106 CA ALA A4111 67.077 85.442 146.121 1.00234.80 ATOM 107 C ALA A4111 66.341 85.380 144.791 1.00234.80 ATOM 108 O ALA A4111 65.353 86.090 144.588 1.00234.80 ATOM 109 CB ALA A4111 68.437 86.124 145.957 1.00234.80 ATOM 110 N THR A4112 66.804 84.527 143.882 1.00245.10 ATOM 111 CA THR A4112 66.168 84.387 142.580 1.00245.10 ATOM 112 C THR A4112 65.019 83.386 142.593 1.00245.10 ATOM 113 O THR A4112 64.386 83.181 141.552 1.00245.10 ATOM 114 CB THR A4112 67.198 83.983 141.520 1.00245.10 ATOM 115 OG1 THR A4112 66.519 83.546 140.335 1.00245.10 ATOM 116 CG2 THR A4112 68.091 82.864 142.038 1.00245.10 ATOM 117 N ASP A4113 64.743 82.761 143.744 1.00252.97 ATOM 118 CA ASP A4113 63.567 81.931 143.975 1.00252.97 ATOM 119 C ASP A4113 62.331 82.741 143.597 1.00252.97 ATOM 120 O ASP A4113 62.010 83.715 144.287 1.00252.97 ATOM 121 CB ASP A4113 63.511 81.492 145.445 1.00252.97 ATOM 122 CG ASP A4113 62.906 80.111 145.632 1.00252.97 ATOM 123 OD1 ASP A4113 63.681 79.151 145.831 1.00252.97 ATOM 124 OD2 ASP A4113 61.663 79.987 145.595 1.00252.97 ATOM 125 N PRO A4114 61.625 82.395 142.513 1.00256.57 ATOM 126 CA PRO A4114 60.476 83.220 142.092 1.00256.57 ATOM 127 C PRO A4114 59.415 83.382 143.169 1.00256.57 ATOM 128 O PRO A4114 58.576 84.285 143.062 1.00256.57 ATOM 129 CB PRO A4114 59.919 82.469 140.869 1.00256.57 ATOM 130 CG PRO A4114 60.564 81.116 140.893 1.00256.57 ATOM 131 CD PRO A4114 61.884 81.296 141.570 1.00256.57 ATOM 132 N ASN A4115 59.427 82.541 144.205 1.00251.72 ATOM 133 CA ASN A4115 58.496 82.704 145.316 1.00251.72 ATOM 134 C ASN A4115 58.812 83.966 146.111 1.00251.72 ATOM 135 O ASN A4115 57.920 84.774 146.388 1.00251.72 ATOM 136 CB ASN A4115 58.542 81.469 146.215 1.00251.72 ATOM 137 CG ASN A4115 57.323 81.347 147.102 1.00251.72 ATOM 138 OD1 ASN A4115 56.900 82.313 147.734 1.00251.72 ATOM 139 ND2 ASN A4115 56.744 80.153 147.146 1.00251.72 ATOM 140 N ILE A4116 60.082 84.156 146.485 1.00246.65 ATOM 141 CA ILE A4116 60.491 85.362 147.205 1.00246.65 ATOM 142 C ILE A4116 60.651 86.562 146.287 1.00246.65 ATOM 143 O ILE A4116 60.867 87.679 146.773 1.00246.65 ATOM 144 CB ILE A4116 61.809 85.108 147.962 1.00 30.00 ATOM 145 N LEU A4117 60.550 86.364 144.972 1.00242.74 ATOM 146 CA LEU A4117 60.523 87.469 144.022 1.00242.74 ATOM 147 C LEU A4117 59.115 87.980 143.758 1.00242.74 ATOM 148 O LEU A4117 58.948 89.135 143.354 1.00242.74 ATOM 149 CB LEU A4117 61.147 87.047 142.690 1.00242.74 ATOM 150 CG LEU A4117 62.547 87.555 142.348 1.00242.74 ATOM 151 CD1 LEU A4117 62.978 86.981 141.009 1.00242.74 ATOM 152 CD2 LEU A4117 62.581 89.071 142.328 1.00242.74 ATOM 153 N GLY A4118 58.102 87.142 143.961 1.00240.15 ATOM 154 CA GLY A4118 56.728 87.522 143.708 1.00240.15 ATOM 155 C GLY A4118 56.253 88.642 144.606 1.00240.15 ATOM 156 O GLY A4118 56.378 89.818 144.254 1.00240.15 ATOM 157 N ARG A4119 55.703 88.292 145.768 1.00240.79 ATOM 158 CA ARG A4119 55.291 89.293 146.741 1.00240.79 ATOM 159 C ARG A4119 56.478 90.169 147.100 1.00240.79 ATOM 160 O ARG A4119 57.323 89.776 147.905 1.00240.79 ATOM 161 CB ARG A4119 54.717 88.638 147.996 1.00240.79 ATOM 162 N THR A4120 56.565 91.345 146.499 1.00238.20 ATOM 163 CA THR A4120 57.708 92.232 146.676 1.00238.20 ATOM 164 C THR A4120 57.252 93.660 146.601 1.00238.20 ATOM 165 O THR A4120 56.063 93.941 146.455 1.00238.20 ATOM 166 CB THR A4120 58.777 91.994 145.619 1.00238.20 ATOM 167 OG1 THR A4120 58.144 91.762 144.360 1.00238.20 ATOM 168 CG2 THR A4120 59.593 90.736 145.955 1.00238.20 ATOM 169 N TRP A4121 58.208 94.576 146.648 1.00224.50 ATOM 170 CA TRP A4121 57.915 95.989 146.499 1.00224.50 ATOM 171 C TRP A4121 57.985 96.414 145.038 1.00224.50 ATOM 172 O TRP A4121 58.838 95.942 144.284 1.00224.50 ATOM 173 CB TRP A4121 58.889 96.837 147.316 1.00224.50 ATOM 174 CG TRP A4121 58.430 98.250 147.462 1.00224.50 ATOM 175 CD1 TRP A4121 59.179 99.380 147.312 1.00224.50 ATOM 176 CD2 TRP A4121 57.109 98.686 147.821 1.00224.50 ATOM 177 NE1 TRP A4121 58.400 100.492 147.530 1.00224.50 ATOM 178 CE2 TRP A4121 57.128 100.092 147.849 1.00224.50 ATOM 179 CE3 TRP A4121 55.910 98.020 148.118 1.00224.50 ATOM 180 CZ2 TRP A4121 55.999 100.848 148.159 1.00224.50 ATOM 181 CZ3 TRP A4121 54.790 98.769 148.422 1.00224.50 ATOM 182 CH2 TRP A4121 54.841 100.170 148.443 1.00224.50 ATOM 183 N GLU A4122 57.087 97.312 144.642 1.00220.44 ATOM 184 CA GLU A4122 57.179 97.925 143.324 1.00220.44 ATOM 185 C GLU A4122 58.232 99.029 143.327 1.00220.44 ATOM 186 O GLU A4122 58.547 99.613 144.366 1.00220.44 ATOM 187 CB GLU A4122 55.824 98.490 142.893 1.00215.07 ATOM 188 N GLY A4123 58.792 99.300 142.149 1.00214.87 ATOM 189 CA GLY A4123 59.818 100.315 141.999 1.00214.87 ATOM 190 C GLY A4123 61.178 99.946 142.541 1.00214.87 ATOM 191 O GLY A4123 62.162 100.620 142.209 1.00214.87 ATOM 192 N TRP A4124 61.266 98.908 143.364 1.00217.22 ATOM 193 CA TRP A4124 62.504 98.321 143.855 1.00217.22 ATOM 194 C TRP A4124 63.221 97.497 142.780 1.00217.22 ATOM 195 O TRP A4124 64.145 96.740 143.097 1.00217.22 ATOM 196 CB TRP A4124 62.151 97.497 145.099 1.00217.22 ATOM 197 CG TRP A4124 63.234 96.795 145.837 1.00217.22 ATOM 198 CD1 TRP A4124 64.045 97.313 146.806 1.00217.22 ATOM 199 CD2 TRP A4124 63.542 95.402 145.756 1.00217.22 ATOM 200 NE1 TRP A4124 64.879 96.333 147.290 1.00217.22 ATOM 201 CE2 TRP A4124 64.585 95.150 146.662 1.00217.22 ATOM 202 CE3 TRP A4124 63.050 94.347 144.984 1.00217.22 ATOM 203 CZ2 TRP A4124 65.143 93.881 146.821 1.00217.22 ATOM 204 CZ3 TRP A4124 63.610 93.091 145.134 1.00217.22 ATOM 205 CH2 TRP A4124 64.649 92.869 146.044 1.00217.22 ATOM 206 N GLU A4125 62.820 97.668 141.522 1.00223.80 ATOM 207 CA GLU A4125 63.397 96.974 140.377 1.00223.80 ATOM 208 C GLU A4125 63.525 95.463 140.622 1.00223.80 ATOM 209 O GLU A4125 64.614 94.907 140.534 1.00223.80 ATOM 210 CB GLU A4125 64.749 97.572 140.010 1.00239.59 ATOM 211 N PRO A4126 62.407 94.780 140.930 1.00230.73 ATOM 212 CA PRO A4126 62.497 93.369 141.323 1.00230.73 ATOM 213 C PRO A4126 62.301 92.430 140.148 1.00230.73 ATOM 214 O PRO A4126 61.169 92.052 139.845 1.00230.73 ATOM 215 CB PRO A4126 61.356 93.233 142.336 1.00230.73 ATOM 216 CG PRO A4126 60.302 94.222 141.829 1.00230.73 ATOM 217 CD PRO A4126 61.014 95.261 140.972 1.00230.73 ATOM 218 N TRP A4127 63.376 92.030 139.482 1.00236.32 ATOM 219 CA TRP A4127 63.223 91.330 138.210 1.00236.32 ATOM 220 C TRP A4127 64.141 90.115 138.105 1.00236.32 ATOM 221 O TRP A4127 63.683 88.975 138.179 1.00236.32 ATOM 222 CB TRP A4127 63.485 92.304 137.057 1.00236.32 ATOM 223 CG TRP A4127 62.711 93.590 137.212 1.00236.32 ATOM 224 CD1 TRP A4127 63.226 94.854 137.329 1.00236.32 ATOM 225 CD2 TRP A4127 61.286 93.732 137.289 1.00236.32 ATOM 226 NE1 TRP A4127 62.212 95.768 137.472 1.00236.32 ATOM 227 CE2 TRP A4127 61.012 95.105 137.450 1.00236.32 ATOM 228 CE3 TRP A4127 60.215 92.832 137.229 1.00236.32 ATOM 229 CZ2 TRP A4127 59.714 95.595 137.557 1.00236.32 ATOM 230 CZ3 TRP A4127 58.931 93.319 137.342 1.00236.32 ATOM 231 CH2 TRP A4127 58.692 94.683 137.508 1.00236.32 TER