HEADER VIRAL PROTEIN/IMMUNE SYSTEM 31-DEC-69 5W4L TITLE Crystal structure of the non-neutralizing and ADCC-potent C11-like TITLE 2 antibody N12-i3 in complex with HIV-1 clade A/E gp120, the CD4 TITLE 3 mimetic M48U1, and the antibody N5-i5. COMPND MOL_ID: 1; COMPND 2 MOLECULE: clade A/E 93TH057 HIV-1 gp120 core; COMPND 3 CHAIN: G, A; COMPND 4 MUTATION: YES; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 CD4 mimetic peptide M48U1; COMPND 8 CHAIN: N, M; COMPND 9 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.92 ANGSTORMS DBREF 5W4L A 44 492 UNP A0A0M3KK A0A0M3KKW9_ 1 353 DBREF 5W4L M 1 28 PDB 5W4L 5W4L 1 28 SEQRES 1 M 28 MPT ASN LEU HIS PHE CYS GLN LEU ARG CYS LYS SER LEU SEQRES 2 M 28 GLY LEU LEU GLY ARG CYS ALA DPR THR U2X CYS ALA CYS SEQRES 3 M 28 VAL NH2 ATOM 1 CA MPT M 1 -65.556 -52.990 53.237 1.00 58.93 ATOM 2 C MPT M 1 -64.557 -54.015 52.710 1.00 58.64 ATOM 3 O MPT M 1 -64.921 -54.688 51.702 1.00 59.54 ATOM 4 CB MPT M 1 -66.105 -53.301 54.640 1.00 58.36 ATOM 5 SG MPT M 1 -66.276 -55.044 55.096 1.00 59.07 ATOM 6 N ASN M 2 -63.167 -54.109 53.313 1.00 57.56 ATOM 7 CA ASN M 2 -62.288 -55.319 53.285 1.00 57.05 ATOM 8 C ASN M 2 -63.062 -56.453 53.950 1.00 55.74 ATOM 9 O ASN M 2 -62.997 -56.608 55.170 1.00 56.22 ATOM 10 CB ASN M 2 -60.957 -55.067 54.024 1.00 57.68 ATOM 11 CG ASN M 2 -60.070 -54.032 53.338 1.00 58.19 ATOM 12 OD1 ASN M 2 -60.130 -53.836 52.123 1.00 58.00 ATOM 13 ND2 ASN M 2 -59.221 -53.375 54.124 1.00 57.54 ATOM 14 N LEU M 3 -63.831 -57.205 53.158 1.00 54.08 ATOM 15 CA LEU M 3 -64.746 -58.217 53.712 1.00 53.36 ATOM 16 C LEU M 3 -64.036 -59.386 54.377 1.00 53.56 ATOM 17 O LEU M 3 -64.332 -59.714 55.523 1.00 53.74 ATOM 18 CB LEU M 3 -65.699 -58.781 52.649 1.00 52.81 ATOM 19 CG LEU M 3 -66.782 -59.746 53.181 1.00 52.53 ATOM 20 CD1 LEU M 3 -67.504 -59.251 54.439 1.00 52.50 ATOM 21 CD2 LEU M 3 -67.789 -60.079 52.092 1.00 52.74 ATOM 22 N HIS M 4 -63.121 -60.029 53.648 0.50 52.36 ATOM 23 CA HIS M 4 -62.379 -61.179 54.176 0.50 51.26 ATOM 24 C HIS M 4 -61.853 -60.846 55.562 0.50 51.23 ATOM 25 O HIS M 4 -62.224 -61.509 56.537 0.50 50.83 ATOM 26 CB HIS M 4 -61.231 -61.583 53.250 0.50 50.66 ATOM 27 CG HIS M 4 -60.470 -62.781 53.729 0.50 49.58 ATOM 28 ND1 HIS M 4 -61.044 -64.028 53.847 0.50 49.12 ATOM 29 CD2 HIS M 4 -59.183 -62.921 54.124 0.50 49.05 ATOM 30 CE1 HIS M 4 -60.145 -64.884 54.297 0.50 49.10 ATOM 31 NE2 HIS M 4 -59.006 -64.238 54.471 0.50 49.01 ATOM 32 N PHE M 5 -61.085 -59.756 55.654 1.00 51.67 ATOM 33 CA PHE M 5 -60.584 -59.255 56.937 1.00 52.40 ATOM 34 C PHE M 5 -61.736 -59.263 57.942 1.00 52.93 ATOM 35 O PHE M 5 -61.620 -59.831 59.024 1.00 52.75 ATOM 36 CB PHE M 5 -60.064 -57.815 56.741 1.00 52.59 ATOM 37 CG PHE M 5 -59.053 -57.344 57.763 1.00 51.99 ATOM 38 CD1 PHE M 5 -58.048 -56.467 57.366 1.00 52.00 ATOM 39 CD2 PHE M 5 -59.098 -57.730 59.107 1.00 52.33 ATOM 40 CE1 PHE M 5 -57.112 -55.997 58.272 1.00 52.66 ATOM 41 CE2 PHE M 5 -58.160 -57.259 60.015 1.00 52.52 ATOM 42 CZ PHE M 5 -57.167 -56.393 59.596 1.00 52.93 ATOM 43 N CYS M 6 -62.859 -58.677 57.531 1.00 53.69 ATOM 44 CA CYS M 6 -64.028 -58.517 58.391 1.00 54.24 ATOM 45 C CYS M 6 -64.630 -59.829 58.897 1.00 54.44 ATOM 46 O CYS M 6 -64.798 -59.998 60.106 1.00 53.73 ATOM 47 CB CYS M 6 -65.104 -57.680 57.680 1.00 53.84 ATOM 48 SG CYS M 6 -66.536 -57.312 58.709 1.00 53.98 ATOM 49 N GLN M 7 -64.964 -60.735 57.978 1.00 54.92 ATOM 50 CA GLN M 7 -65.505 -62.055 58.338 1.00 55.16 ATOM 51 C GLN M 7 -64.591 -62.766 59.329 1.00 56.20 ATOM 52 O GLN M 7 -65.060 -63.324 60.325 1.00 56.28 ATOM 53 CB GLN M 7 -65.698 -62.929 57.094 1.00 54.92 ATOM 54 CG GLN M 7 -66.875 -62.515 56.216 1.00 54.96 ATOM 55 CD GLN M 7 -66.793 -63.047 54.789 1.00 55.34 ATOM 56 OE1 GLN M 7 -65.705 -63.235 54.234 1.00 55.42 ATOM 57 NE2 GLN M 7 -67.952 -63.272 54.180 1.00 55.33 ATOM 58 N LEU M 8 -63.288 -62.698 59.060 1.00 57.44 ATOM 59 CA LEU M 8 -62.274 -63.369 59.880 1.00 58.95 ATOM 60 C LEU M 8 -62.074 -62.671 61.233 1.00 57.68 ATOM 61 O LEU M 8 -61.847 -63.336 62.244 1.00 57.37 ATOM 62 CB LEU M 8 -60.941 -63.469 59.114 1.00 61.17 ATOM 63 CG LEU M 8 -60.249 -64.836 59.116 1.00 63.30 ATOM 64 CD1 LEU M 8 -59.238 -64.915 57.976 1.00 63.92 ATOM 65 CD2 LEU M 8 -59.599 -65.138 60.462 1.00 63.79 ATOM 66 N ARG M 9 -62.163 -61.340 61.242 1.00 56.78 ATOM 67 CA ARG M 9 -62.019 -60.545 62.469 1.00 56.07 ATOM 68 C ARG M 9 -63.214 -60.746 63.410 1.00 54.85 ATOM 69 O ARG M 9 -63.041 -60.890 64.625 1.00 52.98 ATOM 70 CB ARG M 9 -61.837 -59.059 62.121 1.00 56.47 ATOM 71 CG ARG M 9 -61.266 -58.203 63.249 1.00 57.33 ATOM 72 CD ARG M 9 -60.486 -56.983 62.752 1.00 57.48 ATOM 73 NE ARG M 9 -61.266 -55.736 62.788 1.00 58.11 ATOM 74 CZ ARG M 9 -61.681 -55.019 61.733 1.00 58.01 ATOM 75 NH1 ARG M 9 -61.420 -55.375 60.471 1.00 57.79 ATOM 76 NH2 ARG M 9 -62.377 -53.907 61.946 1.00 57.51 ATOM 77 N CYS M 10 -64.418 -60.755 62.836 1.00 54.98 ATOM 78 CA CYS M 10 -65.644 -61.081 63.578 1.00 54.69 ATOM 79 C CYS M 10 -65.634 -62.518 64.104 1.00 55.17 ATOM 80 O CYS M 10 -66.100 -62.769 65.222 1.00 55.50 ATOM 81 CB CYS M 10 -66.891 -60.871 62.706 1.00 53.77 ATOM 82 SG CYS M 10 -67.256 -59.152 62.274 1.00 52.10 ATOM 83 N LYS M 11 -65.099 -63.446 63.305 1.00 55.58 ATOM 84 CA LYS M 11 -64.986 -64.859 63.701 1.00 56.35 ATOM 85 C LYS M 11 -64.307 -65.034 65.061 1.00 56.58 ATOM 86 O LYS M 11 -64.744 -65.856 65.861 1.00 56.38 ATOM 87 CB LYS M 11 -64.239 -65.677 62.642 1.00 57.16 ATOM 88 CG LYS M 11 -64.411 -67.183 62.786 1.00 58.27 ATOM 89 CD LYS M 11 -63.655 -67.934 61.703 1.00 59.21 ATOM 90 CE LYS M 11 -63.950 -69.424 61.745 1.00 59.36 ATOM 91 NZ LYS M 11 -63.081 -70.175 60.798 1.00 59.76 ATOM 92 N SER M 12 -63.271 -64.241 65.333 1.00 58.50 ATOM 93 CA SER M 12 -62.598 -64.249 66.644 1.00 59.92 ATOM 94 C SER M 12 -63.494 -63.828 67.822 1.00 60.79 ATOM 95 O SER M 12 -63.218 -64.197 68.966 1.00 62.41 ATOM 96 CB SER M 12 -61.343 -63.371 66.612 1.00 60.47 ATOM 97 OG SER M 12 -60.368 -63.917 65.740 1.00 60.69 ATOM 98 N LEU M 13 -64.541 -63.048 67.544 1.00 60.34 ATOM 99 CA LEU M 13 -65.583 -62.741 68.533 1.00 59.63 ATOM 100 C LEU M 13 -66.778 -63.700 68.467 1.00 57.76 ATOM 101 O LEU M 13 -67.761 -63.504 69.181 1.00 57.64 ATOM 102 CB LEU M 13 -66.068 -61.298 68.361 1.00 60.78 ATOM 103 CG LEU M 13 -64.994 -60.210 68.238 1.00 61.72 ATOM 104 CD1 LEU M 13 -65.642 -58.838 68.358 1.00 62.12 ATOM 105 CD2 LEU M 13 -63.883 -60.378 69.270 1.00 61.54 ATOM 106 N GLY M 14 -66.687 -64.729 67.623 1.00 56.51 ATOM 107 CA GLY M 14 -67.716 -65.759 67.494 1.00 55.98 ATOM 108 C GLY M 14 -68.873 -65.392 66.584 1.00 55.29 ATOM 109 O GLY M 14 -69.967 -65.943 66.732 1.00 56.67 ATOM 110 N LEU M 15 -68.622 -64.502 65.622 1.00 54.36 ATOM 111 CA LEU M 15 -69.679 -63.840 64.850 1.00 53.17 ATOM 112 C LEU M 15 -69.386 -63.876 63.356 1.00 51.45 ATOM 113 O LEU M 15 -68.229 -63.994 62.951 1.00 51.63 ATOM 114 CB LEU M 15 -69.799 -62.382 65.304 1.00 53.33 ATOM 115 CG LEU M 15 -70.195 -62.147 66.768 1.00 54.06 ATOM 116 CD1 LEU M 15 -69.899 -60.716 67.192 1.00 54.33 ATOM 117 CD2 LEU M 15 -71.661 -62.484 67.005 1.00 54.26 ATOM 118 N LEU M 16 -70.442 -63.792 62.545 1.00 50.12 ATOM 119 CA LEU M 16 -70.302 -63.598 61.096 1.00 49.92 ATOM 120 C LEU M 16 -70.076 -62.119 60.802 1.00 49.44 ATOM 121 O LEU M 16 -70.490 -61.260 61.577 1.00 50.37 ATOM 122 CB LEU M 16 -71.530 -64.099 60.325 1.00 50.03 ATOM 123 CG LEU M 16 -71.738 -65.617 60.228 1.00 49.85 ATOM 124 CD1 LEU M 16 -72.837 -66.099 61.170 1.00 49.98 ATOM 125 CD2 LEU M 16 -72.069 -66.017 58.796 1.00 49.77 ATOM 126 N GLY M 17 -69.422 -61.835 59.677 1.00 49.12 ATOM 127 CA GLY M 17 -69.031 -60.470 59.319 1.00 49.96 ATOM 128 C GLY M 17 -69.737 -59.956 58.082 1.00 50.86 ATOM 129 O GLY M 17 -69.954 -60.707 57.129 1.00 51.66 ATOM 130 N ARG M 18 -70.081 -58.668 58.105 1.00 51.91 ATOM 131 CA ARG M 18 -70.784 -57.989 57.014 1.00 52.68 ATOM 132 C ARG M 18 -70.123 -56.652 56.750 1.00 52.46 ATOM 133 O ARG M 18 -69.702 -55.971 57.688 1.00 51.68 ATOM 134 CB ARG M 18 -72.230 -57.697 57.405 1.00 54.01 ATOM 135 CG ARG M 18 -73.307 -58.536 56.732 1.00 55.71 ATOM 136 CD ARG M 18 -74.722 -58.016 57.017 1.00 57.04 ATOM 137 NE ARG M 18 -74.826 -57.226 58.257 1.00 57.93 ATOM 138 CZ ARG M 18 -75.924 -57.076 58.998 1.00 59.47 ATOM 139 NH1 ARG M 18 -77.086 -57.633 58.658 1.00 60.59 ATOM 140 NH2 ARG M 18 -75.855 -56.335 60.103 1.00 60.21 ATOM 141 N CYS M 19 -70.072 -56.265 55.483 1.00 52.57 ATOM 142 CA CYS M 19 -69.583 -54.929 55.121 1.00 52.09 ATOM 143 C CYS M 19 -70.701 -53.935 55.387 1.00 50.03 ATOM 144 O CYS M 19 -71.850 -54.211 55.074 1.00 49.86 ATOM 145 CB CYS M 19 -69.132 -54.849 53.655 1.00 52.55 ATOM 146 SG CYS M 19 -67.393 -55.199 53.388 1.00 55.34 ATOM 147 N ALA M 20 -70.370 -52.822 56.020 1.00 47.95 ATOM 148 CA ALA M 20 -71.290 -51.708 56.131 1.00 46.16 ATOM 149 C ALA M 20 -70.614 -50.581 55.358 1.00 44.85 ATOM 150 O ALA M 20 -69.739 -49.937 55.946 1.00 43.85 ATOM 151 CB ALA M 20 -71.477 -51.339 57.596 1.00 45.55 ATOM 152 N DPR M 21 -70.954 -50.346 54.036 1.00 44.07 ATOM 153 CA DPR M 21 -70.073 -49.348 53.399 1.00 44.93 ATOM 154 CB DPR M 21 -70.486 -49.133 51.948 1.00 44.67 ATOM 155 CG DPR M 21 -71.484 -50.230 51.656 1.00 44.11 ATOM 156 CD DPR M 21 -72.003 -50.649 53.027 1.00 44.01 ATOM 157 C DPR M 21 -68.647 -49.779 53.358 1.00 45.48 ATOM 158 O DPR M 21 -68.363 -50.885 52.907 1.00 46.22 ATOM 159 N THR M 22 -67.754 -48.904 53.813 1.00 45.61 ATOM 160 CA THR M 22 -66.344 -49.237 53.989 1.00 45.44 ATOM 161 C THR M 22 -66.153 -49.930 55.335 1.00 45.40 ATOM 162 O THR M 22 -65.042 -49.958 55.861 1.00 45.18 ATOM 163 CB THR M 22 -65.439 -47.987 53.943 1.00 45.80 ATOM 164 OG1 THR M 22 -65.723 -47.141 55.067 1.00 46.83 ATOM 165 CG2 THR M 22 -65.637 -47.218 52.649 1.00 45.83 ATOM 166 N U2X M 23 -66.919 -50.026 56.337 1.00 48.14 ATOM 167 C U2X M 23 -67.021 -52.023 57.740 1.00 51.84 ATOM 168 O U2X M 23 -68.131 -52.326 57.255 1.00 53.62 ATOM 169 CA U2X M 23 -66.709 -50.504 57.680 1.00 50.14 ATOM 170 CB U2X M 23 -67.519 -49.731 58.685 1.00 49.97 ATOM 171 CG U2X M 23 -67.270 -48.240 58.686 1.00 50.26 ATOM 172 CD1 U2X M 23 -65.978 -47.719 58.841 1.00 49.99 ATOM 173 CD2 U2X M 23 -68.372 -47.381 58.538 1.00 50.37 ATOM 174 CE1 U2X M 23 -65.786 -46.317 58.842 1.00 49.72 ATOM 175 CE2 U2X M 23 -68.183 -45.987 58.539 1.00 50.11 ATOM 176 CZ U2X M 23 -66.889 -45.453 58.692 1.00 49.71 ATOM 177 OH U2X M 23 -66.677 -44.016 58.711 1.00 49.25 ATOM 178 C7 U2X M 23 -67.656 -43.308 59.501 1.00 48.85 ATOM 179 C1 U2X M 23 -67.777 -39.675 60.592 1.00 48.84 ATOM 180 C2 U2X M 23 -68.269 -41.069 60.321 1.00 48.62 ATOM 181 C3 U2X M 23 -67.126 -41.907 59.812 1.00 48.61 ATOM 182 C4 U2X M 23 -66.018 -41.997 60.823 1.00 48.48 ATOM 183 C5 U2X M 23 -65.550 -40.629 61.253 1.00 48.44 ATOM 184 C6 U2X M 23 -66.684 -39.694 61.624 1.00 48.67 ATOM 185 N CYS M 24 -66.899 -52.605 58.901 1.00 51.56 ATOM 186 CA CYS M 24 -67.027 -54.024 59.308 1.00 51.34 ATOM 187 C CYS M 24 -68.011 -54.099 60.457 1.00 50.81 ATOM 188 O CYS M 24 -67.713 -53.629 61.550 1.00 50.18 ATOM 189 CB CYS M 24 -65.672 -54.603 59.727 1.00 51.74 ATOM 190 SG CYS M 24 -65.743 -56.316 60.295 1.00 52.49 ATOM 191 N ALA M 25 -69.190 -54.652 60.185 1.00 51.19 ATOM 192 CA ALA M 25 -70.168 -54.966 61.219 1.00 52.64 ATOM 193 C ALA M 25 -70.152 -56.469 61.467 1.00 53.75 ATOM 194 O ALA M 25 -70.060 -57.258 60.522 1.00 55.10 ATOM 195 CB ALA M 25 -71.554 -54.523 60.783 1.00 53.39 ATOM 196 N CYS M 26 -70.235 -56.859 62.734 1.00 54.23 ATOM 197 CA CYS M 26 -70.362 -58.263 63.105 1.00 55.30 ATOM 198 C CYS M 26 -71.821 -58.542 63.440 1.00 57.53 ATOM 199 O CYS M 26 -72.507 -57.670 63.959 1.00 57.60 ATOM 200 CB CYS M 26 -69.466 -58.587 64.300 1.00 54.59 ATOM 201 SG CYS M 26 -67.699 -58.266 64.054 1.00 53.66 ATOM 202 N VAL M 27 -72.289 -59.746 63.112 1.00 61.67 ATOM 203 CA VAL M 27 -73.650 -60.202 63.459 1.00 64.94 ATOM 204 C VAL M 27 -73.724 -61.731 63.537 1.00 69.28 ATOM 205 O VAL M 27 -72.771 -62.403 63.945 1.00 70.41 ATOM 206 CB VAL M 27 -74.740 -59.697 62.459 1.00 66.25 ATOM 207 CG1 VAL M 27 -75.456 -58.453 62.985 1.00 67.60 ATOM 208 CG2 VAL M 27 -74.163 -59.464 61.064 1.00 64.81 ATOM 209 N NH2 M 28 -73.594 -62.354 62.450 1.00 77.14 ATOM 210 CL CL M 611 -62.707 -54.497 65.578 1.00 59.80 TER