HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 5YEF TITLE Crystal structure of CTCF ZFs2-8-Hs5-1aE COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B, G, J; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.81 ANGSTORMS DBREF 5YEF A 292 490 UNP P49711 CTCF_HUMAN 292 490 SEQRES 1 A 24 GLY LYS LYS CYS ARG TYR CYS ASP ALA VAL PHE HIS GLU SEQRES 2 A 24 ARG TYR ALA LEU ILE GLN HIS GLN LYS SER HIS ATOM 1 N GLY A 466 -31.189 -6.695 110.003 1.00 73.36 ATOM 2 CA GLY A 466 -29.870 -6.349 110.501 1.00 69.07 ATOM 3 C GLY A 466 -29.092 -7.490 111.147 1.00 67.85 ATOM 4 O GLY A 466 -29.593 -8.596 111.389 1.00 68.33 ATOM 5 N LYS A 467 -27.796 -7.232 111.328 1.00 66.94 ATOM 6 CA LYS A 467 -26.882 -8.096 112.055 1.00 66.58 ATOM 7 C LYS A 467 -26.095 -7.250 113.041 1.00 69.68 ATOM 8 O LYS A 467 -25.734 -6.112 112.729 1.00 76.01 ATOM 9 CB LYS A 467 -25.924 -8.827 111.132 1.00 64.59 ATOM 10 CG LYS A 467 -26.579 -9.897 110.278 1.00 65.56 ATOM 11 CD LYS A 467 -27.526 -10.789 111.064 1.00 70.21 ATOM 12 CE LYS A 467 -27.635 -12.157 110.422 1.00 76.28 ATOM 13 NZ LYS A 467 -26.306 -12.837 110.445 1.00 82.57 ATOM 14 N LYS A 468 -25.917 -7.753 114.257 1.00 63.49 ATOM 15 CA LYS A 468 -25.154 -7.032 115.263 1.00 64.98 ATOM 16 C LYS A 468 -23.709 -7.511 115.246 1.00 65.82 ATOM 17 O LYS A 468 -23.432 -8.670 114.939 1.00 69.60 ATOM 18 CB LYS A 468 -25.765 -7.198 116.666 1.00 60.84 ATOM 19 CG LYS A 468 -24.930 -6.604 117.835 1.00 59.83 ATOM 20 CD LYS A 468 -25.563 -6.878 119.221 1.00 68.90 ATOM 21 CE LYS A 468 -25.068 -8.160 119.911 1.00 69.36 ATOM 22 NZ LYS A 468 -23.675 -8.106 120.444 1.00 70.01 ATOM 23 N CYS A 469 -22.785 -6.585 115.506 1.00 62.68 ATOM 24 CA CYS A 469 -21.396 -6.960 115.735 1.00 63.27 ATOM 25 C CYS A 469 -21.313 -8.046 116.802 1.00 67.94 ATOM 26 O CYS A 469 -22.103 -8.072 117.753 1.00 63.70 ATOM 27 CB CYS A 469 -20.583 -5.744 116.190 1.00 64.49 ATOM 28 SG CYS A 469 -18.975 -6.191 116.918 1.00 70.95 ATOM 29 N ARG A 470 -20.348 -8.950 116.644 1.00 92.86 ATOM 30 CA ARG A 470 -20.178 -10.017 117.627 1.00 98.04 ATOM 31 C ARG A 470 -19.639 -9.492 118.961 1.00 99.49 ATOM 32 O ARG A 470 -19.871 -10.119 120.003 1.00100.96 ATOM 33 CB ARG A 470 -19.293 -11.126 117.054 1.00105.92 ATOM 34 CG ARG A 470 -19.171 -12.367 117.954 1.00112.55 ATOM 35 CD ARG A 470 -18.280 -13.443 117.347 1.00117.55 ATOM 36 NE ARG A 470 -16.920 -12.969 117.123 1.00117.40 ATOM 37 CZ ARG A 470 -15.920 -13.759 116.755 1.00119.21 ATOM 38 NH1 ARG A 470 -16.137 -15.060 116.589 1.00122.39 ATOM 39 NH2 ARG A 470 -14.709 -13.253 116.567 1.00117.65 ATOM 40 N TYR A 471 -18.903 -8.366 118.957 1.00 93.36 ATOM 41 CA TYR A 471 -18.257 -7.862 120.162 1.00 94.03 ATOM 42 C TYR A 471 -18.729 -6.490 120.644 1.00 87.23 ATOM 43 O TYR A 471 -18.377 -6.106 121.764 1.00 95.09 ATOM 44 CB TYR A 471 -16.736 -7.752 119.983 1.00102.42 ATOM 45 CG TYR A 471 -15.909 -8.849 119.315 1.00108.33 ATOM 46 CD1 TYR A 471 -15.088 -9.665 120.087 1.00114.65 ATOM 47 CD2 TYR A 471 -15.853 -8.997 117.927 1.00105.32 ATOM 48 CE1 TYR A 471 -14.278 -10.633 119.512 1.00118.07 ATOM 49 CE2 TYR A 471 -15.045 -9.977 117.343 1.00108.89 ATOM 50 CZ TYR A 471 -14.261 -10.784 118.145 1.00115.90 ATOM 51 OH TYR A 471 -13.454 -11.753 117.587 1.00118.73 ATOM 52 N CYS A 472 -19.547 -5.763 119.880 1.00 77.85 ATOM 53 CA CYS A 472 -20.046 -4.453 120.301 1.00 71.24 ATOM 54 C CYS A 472 -21.517 -4.370 119.919 1.00 72.34 ATOM 55 O CYS A 472 -22.080 -5.306 119.341 1.00 74.82 ATOM 56 CB CYS A 472 -19.261 -3.278 119.674 1.00 75.69 ATOM 57 SG CYS A 472 -19.499 -2.913 117.851 1.00 78.98 ATOM 58 N ASP A 473 -22.171 -3.272 120.302 1.00 76.66 ATOM 59 CA ASP A 473 -23.602 -3.163 120.039 1.00 75.77 ATOM 60 C ASP A 473 -23.946 -2.683 118.636 1.00 76.86 ATOM 61 O ASP A 473 -25.138 -2.591 118.331 1.00 79.70 ATOM 62 CB ASP A 473 -24.313 -2.253 121.051 1.00 76.41 ATOM 63 CG ASP A 473 -23.850 -0.826 120.981 1.00 84.45 ATOM 64 OD1 ASP A 473 -23.807 -0.184 122.052 1.00 90.82 ATOM 65 OD2 ASP A 473 -23.502 -0.341 119.867 1.00 84.31 ATOM 66 N ALA A 474 -22.966 -2.309 117.814 1.00 66.83 ATOM 67 CA ALA A 474 -23.268 -1.716 116.510 1.00 65.69 ATOM 68 C ALA A 474 -23.928 -2.739 115.605 1.00 61.57 ATOM 69 O ALA A 474 -23.516 -3.901 115.557 1.00 60.75 ATOM 70 CB ALA A 474 -22.009 -1.152 115.854 1.00 62.32 ATOM 71 N VAL A 475 -25.015 -2.320 114.965 1.00 66.83 ATOM 72 CA VAL A 475 -25.745 -3.152 114.012 1.00 70.08 ATOM 73 C VAL A 475 -25.487 -2.687 112.567 1.00 73.25 ATOM 74 O VAL A 475 -25.358 -1.481 112.261 1.00 76.00 ATOM 75 CB VAL A 475 -27.246 -3.140 114.366 1.00 68.90 ATOM 76 CG1 VAL A 475 -27.819 -1.716 114.319 1.00 69.91 ATOM 77 CG2 VAL A 475 -28.037 -4.080 113.482 1.00 71.48 ATOM 78 N PHE A 476 -25.439 -3.660 111.656 1.00 70.21 ATOM 79 CA PHE A 476 -25.173 -3.417 110.251 1.00 70.00 ATOM 80 C PHE A 476 -26.239 -4.099 109.410 1.00 71.59 ATOM 81 O PHE A 476 -26.897 -5.042 109.852 1.00 68.95 ATOM 82 CB PHE A 476 -23.778 -3.911 109.892 1.00 69.53 ATOM 83 CG PHE A 476 -22.688 -3.103 110.535 1.00 73.14 ATOM 84 CD1 PHE A 476 -22.281 -3.372 111.852 1.00 69.88 ATOM 85 CD2 PHE A 476 -22.105 -2.036 109.852 1.00 73.09 ATOM 86 CE1 PHE A 476 -21.289 -2.611 112.450 1.00 72.49 ATOM 87 CE2 PHE A 476 -21.112 -1.269 110.433 1.00 75.70 ATOM 88 CZ PHE A 476 -20.702 -1.554 111.737 1.00 77.67 ATOM 89 N HIS A 477 -26.419 -3.589 108.192 1.00 80.56 ATOM 90 CA HIS A 477 -27.410 -4.113 107.268 1.00 80.55 ATOM 91 C HIS A 477 -26.783 -4.771 106.048 1.00 84.49 ATOM 92 O HIS A 477 -27.509 -5.278 105.185 1.00 84.15 ATOM 93 CB HIS A 477 -28.361 -2.996 106.833 1.00 81.26 ATOM 94 CG HIS A 477 -29.150 -2.415 107.961 1.00 85.80 ATOM 95 ND1 HIS A 477 -30.352 -2.949 108.380 1.00 89.51 ATOM 96 CD2 HIS A 477 -28.911 -1.351 108.765 1.00 83.73 ATOM 97 CE1 HIS A 477 -30.822 -2.239 109.392 1.00 84.22 ATOM 98 NE2 HIS A 477 -29.967 -1.262 109.645 1.00 84.34 ATOM 99 N GLU A 478 -25.460 -4.826 105.968 1.00 87.33 ATOM 100 CA GLU A 478 -24.830 -5.578 104.897 1.00 87.90 ATOM 101 C GLU A 478 -23.687 -6.383 105.503 1.00 84.85 ATOM 102 O GLU A 478 -23.011 -5.933 106.439 1.00 79.59 ATOM 103 CB GLU A 478 -24.345 -4.673 103.753 1.00 93.53 ATOM 104 CG GLU A 478 -22.916 -4.248 103.848 1.00 98.11 ATOM 105 CD GLU A 478 -22.376 -3.679 102.550 1.00104.49 ATOM 106 OE1 GLU A 478 -23.110 -3.640 101.524 1.00107.58 ATOM 107 OE2 GLU A 478 -21.193 -3.273 102.569 1.00105.43 ATOM 108 N ARG A 479 -23.581 -7.633 105.052 1.00 74.87 ATOM 109 CA ARG A 479 -22.628 -8.572 105.627 1.00 68.40 ATOM 110 C ARG A 479 -21.188 -8.097 105.484 1.00 70.60 ATOM 111 O ARG A 479 -20.345 -8.397 106.345 1.00 72.11 ATOM 112 CB ARG A 479 -22.814 -9.938 104.979 1.00 67.70 ATOM 113 CG ARG A 479 -21.754 -10.885 105.369 1.00 69.03 ATOM 114 CD ARG A 479 -22.126 -12.274 104.992 1.00 75.98 ATOM 115 NE ARG A 479 -21.154 -13.210 105.522 1.00 79.75 ATOM 116 CZ ARG A 479 -21.099 -13.544 106.802 1.00 80.78 ATOM 117 NH1 ARG A 479 -21.961 -13.010 107.666 1.00 75.28 ATOM 118 NH2 ARG A 479 -20.185 -14.410 107.212 1.00 84.17 ATOM 119 N TYR A 480 -20.876 -7.388 104.399 1.00 73.19 ATOM 120 CA TYR A 480 -19.521 -6.891 104.226 1.00 76.43 ATOM 121 C TYR A 480 -19.163 -5.915 105.325 1.00 76.86 ATOM 122 O TYR A 480 -18.127 -6.052 105.982 1.00 79.21 ATOM 123 CB TYR A 480 -19.389 -6.194 102.889 1.00 83.67 ATOM 124 CG TYR A 480 -18.045 -5.571 102.624 1.00 84.74 ATOM 125 CD1 TYR A 480 -16.885 -6.336 102.647 1.00 83.73 ATOM 126 CD2 TYR A 480 -17.941 -4.227 102.299 1.00 85.83 ATOM 127 CE1 TYR A 480 -15.656 -5.780 102.357 1.00 86.67 ATOM 128 CE2 TYR A 480 -16.722 -3.661 102.019 1.00 89.70 ATOM 129 CZ TYR A 480 -15.577 -4.438 102.044 1.00 90.09 ATOM 130 OH TYR A 480 -14.352 -3.864 101.750 1.00 93.93 ATOM 131 N ALA A 481 -20.011 -4.903 105.520 1.00 83.16 ATOM 132 CA ALA A 481 -19.726 -3.873 106.505 1.00 81.04 ATOM 133 C ALA A 481 -19.591 -4.500 107.876 1.00 84.25 ATOM 134 O ALA A 481 -18.776 -4.054 108.698 1.00 88.59 ATOM 135 CB ALA A 481 -20.819 -2.812 106.501 1.00 76.90 ATOM 136 N LEU A 482 -20.388 -5.547 108.135 1.00 73.65 ATOM 137 CA LEU A 482 -20.332 -6.242 109.409 1.00 71.64 ATOM 138 C LEU A 482 -18.961 -6.878 109.619 1.00 73.38 ATOM 139 O LEU A 482 -18.267 -6.570 110.592 1.00 73.56 ATOM 140 CB LEU A 482 -21.429 -7.310 109.450 1.00 70.23 ATOM 141 CG LEU A 482 -21.376 -8.242 110.660 1.00 69.95 ATOM 142 CD1 LEU A 482 -21.515 -7.388 111.888 1.00 65.13 ATOM 143 CD2 LEU A 482 -22.413 -9.357 110.636 1.00 68.71 ATOM 144 N ILE A 483 -18.521 -7.714 108.669 1.00 76.75 ATOM 145 CA ILE A 483 -17.238 -8.389 108.838 1.00 74.43 ATOM 146 C ILE A 483 -16.101 -7.379 108.873 1.00 76.42 ATOM 147 O ILE A 483 -15.117 -7.560 109.601 1.00 80.51 ATOM 148 CB ILE A 483 -17.024 -9.434 107.735 1.00 74.52 ATOM 149 CG1 ILE A 483 -18.133 -10.472 107.772 1.00 74.20 ATOM 150 CG2 ILE A 483 -15.653 -10.094 107.885 1.00 76.02 ATOM 151 CD1 ILE A 483 -17.988 -11.402 108.903 1.00 78.41 ATOM 152 N GLN A 484 -16.202 -6.315 108.072 1.00 78.22 ATOM 153 CA GLN A 484 -15.160 -5.301 108.057 1.00 82.79 ATOM 154 C GLN A 484 -15.084 -4.613 109.407 1.00 91.66 ATOM 155 O GLN A 484 -13.993 -4.387 109.942 1.00 96.79 ATOM 156 CB GLN A 484 -15.437 -4.282 106.952 1.00 85.22 ATOM 157 CG GLN A 484 -14.993 -4.654 105.534 1.00 85.76 ATOM 158 CD GLN A 484 -13.494 -4.766 105.397 1.00 88.01 ATOM 159 OE1 GLN A 484 -12.892 -5.771 105.782 1.00 90.82 ATOM 160 NE2 GLN A 484 -12.879 -3.726 104.833 1.00 88.40 ATOM 161 N HIS A 485 -16.239 -4.291 109.986 1.00101.35 ATOM 162 CA HIS A 485 -16.260 -3.627 111.277 1.00100.12 ATOM 163 C HIS A 485 -15.628 -4.469 112.364 1.00 99.89 ATOM 164 O HIS A 485 -15.007 -3.926 113.272 1.00105.97 ATOM 165 CB HIS A 485 -17.694 -3.281 111.652 1.00101.25 ATOM 166 CG HIS A 485 -17.885 -3.041 113.114 1.00104.01 ATOM 167 ND1 HIS A 485 -17.106 -2.166 113.841 1.00108.53 ATOM 168 CD2 HIS A 485 -18.738 -3.612 113.999 1.00104.61 ATOM 169 CE1 HIS A 485 -17.493 -2.186 115.108 1.00109.40 ATOM 170 NE2 HIS A 485 -18.481 -3.055 115.231 1.00107.48 ATOM 171 N GLN A 486 -15.764 -5.783 112.301 1.00 84.93 ATOM 172 CA GLN A 486 -15.276 -6.636 113.378 1.00 88.22 ATOM 173 C GLN A 486 -13.757 -6.548 113.511 1.00 99.36 ATOM 174 O GLN A 486 -13.074 -7.577 113.537 1.00102.25 ATOM 175 CB GLN A 486 -15.764 -8.068 113.189 1.00 86.25 ATOM 176 CG GLN A 486 -17.289 -8.175 113.190 1.00 84.21 ATOM 177 CD GLN A 486 -17.778 -9.604 113.364 1.00 90.77 ATOM 178 OE1 GLN A 486 -17.045 -10.565 113.106 1.00 91.00 ATOM 179 NE2 GLN A 486 -19.013 -9.752 113.814 1.00 92.01 ATOM 180 N LYS A 487 -13.232 -5.312 113.538 1.00113.44 ATOM 181 CA LYS A 487 -11.829 -4.957 113.757 1.00118.68 ATOM 182 C LYS A 487 -11.837 -3.571 114.422 1.00115.24 ATOM 183 O LYS A 487 -12.759 -2.781 114.185 1.00111.36 ATOM 184 CB LYS A 487 -11.038 -4.906 112.451 1.00120.40 ATOM 185 CG LYS A 487 -11.594 -5.771 111.344 1.00119.36 ATOM 186 CD LYS A 487 -11.173 -7.201 111.395 1.00122.04 ATOM 187 CE LYS A 487 -12.098 -8.023 110.529 1.00119.23 ATOM 188 NZ LYS A 487 -11.457 -9.065 109.680 1.00120.73 ATOM 189 N SER A 488 -10.836 -3.249 115.244 1.00130.75 ATOM 190 CA SER A 488 -9.643 -4.038 115.540 1.00137.44 ATOM 191 C SER A 488 -9.944 -5.283 116.349 1.00141.38 ATOM 192 O SER A 488 -9.100 -6.177 116.454 1.00148.66 ATOM 193 CB SER A 488 -8.624 -3.155 116.286 1.00138.86 ATOM 194 N HIS A 489 -11.158 -5.309 116.913 1.00122.04 ATOM 195 CA HIS A 489 -11.590 -6.280 117.921 1.00122.12 ATOM 196 C HIS A 489 -10.741 -7.550 118.048 1.00127.30 ATOM 197 O HIS A 489 -10.617 -8.335 117.100 1.00123.92 ATOM 198 CB HIS A 489 -13.043 -6.706 117.640 1.00112.66 ATOM 199 CG HIS A 489 -14.042 -5.596 117.776 1.00105.84 ATOM 200 ND1 HIS A 489 -13.715 -4.369 118.306 1.00100.45 ATOM 201 CD2 HIS A 489 -15.378 -5.556 117.543 1.00 99.86 ATOM 202 CE1 HIS A 489 -14.787 -3.598 118.335 1.00 92.44 ATOM 203 NE2 HIS A 489 -15.813 -4.296 117.883 1.00 93.02 ATOM 204 ZN ZN A 506 -17.909 -4.138 117.083 1.00 83.49 TER