HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 5YEF TITLE Crystal structure of CTCF ZFs2-8-Hs5-1aE COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B, G, J; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.81 ANGSTORMS DBREF 5YEF B 292 490 UNP P49711 CTCF_HUMAN 292 490 SEQRES 1 B 30 GLY GLU ARG PRO PHE GLN CYS SER LEU CYS SER TYR ALA SEQRES 2 B 30 SER ARG ASP THR TYR LYS LEU LYS ARG HIS MET ARG THR SEQRES 3 B 30 HIS SER GLY GLU ATOM 1 N GLY B 375 -53.621 -17.007 75.861 1.00 84.18 ATOM 2 CA GLY B 375 -53.809 -18.098 74.929 1.00 82.79 ATOM 3 C GLY B 375 -53.430 -19.468 75.462 1.00 83.29 ATOM 4 O GLY B 375 -53.375 -20.420 74.676 1.00 96.90 ATOM 5 N GLU B 376 -53.149 -19.597 76.764 1.00 69.69 ATOM 6 CA GLU B 376 -52.861 -20.906 77.339 1.00 69.65 ATOM 7 C GLU B 376 -54.058 -21.829 77.211 1.00 82.19 ATOM 8 O GLU B 376 -55.183 -21.468 77.574 1.00 98.28 ATOM 9 CB GLU B 376 -52.526 -20.830 78.826 1.00 60.21 ATOM 10 CG GLU B 376 -51.363 -20.013 79.248 1.00 75.88 ATOM 11 CD GLU B 376 -51.516 -19.483 80.685 1.00 96.70 ATOM 12 OE1 GLU B 376 -51.415 -20.316 81.626 1.00 99.17 ATOM 13 OE2 GLU B 376 -51.739 -18.248 80.867 1.00 98.65 ATOM 14 N ARG B 377 -53.796 -23.038 76.732 1.00 69.32 ATOM 15 CA ARG B 377 -54.770 -24.127 76.710 1.00 63.46 ATOM 16 C ARG B 377 -54.077 -25.338 77.342 1.00 68.49 ATOM 17 O ARG B 377 -53.592 -26.238 76.645 1.00 88.90 ATOM 18 CB ARG B 377 -55.272 -24.393 75.286 1.00 62.90 ATOM 19 CG ARG B 377 -55.866 -23.166 74.611 1.00 69.65 ATOM 20 CD ARG B 377 -56.427 -23.424 73.225 1.00 70.92 ATOM 21 NE ARG B 377 -56.837 -22.152 72.634 1.00 77.21 ATOM 22 CZ ARG B 377 -58.103 -21.772 72.469 1.00 78.99 ATOM 23 NH1 ARG B 377 -59.091 -22.574 72.850 1.00 76.02 ATOM 24 NH2 ARG B 377 -58.381 -20.582 71.930 1.00 74.86 ATOM 25 N PRO B 378 -53.899 -25.328 78.671 1.00 92.32 ATOM 26 CA PRO B 378 -53.099 -26.379 79.317 1.00 72.08 ATOM 27 C PRO B 378 -53.839 -27.683 79.574 1.00 82.57 ATOM 28 O PRO B 378 -53.627 -28.280 80.636 1.00 77.11 ATOM 29 CB PRO B 378 -52.718 -25.744 80.658 1.00 62.58 ATOM 30 CG PRO B 378 -53.746 -24.752 80.921 1.00 53.29 ATOM 31 CD PRO B 378 -54.288 -24.270 79.620 1.00 74.72 ATOM 32 N PHE B 379 -54.721 -28.125 78.674 1.00 92.38 ATOM 33 CA PHE B 379 -55.455 -29.373 78.887 1.00 87.64 ATOM 34 C PHE B 379 -55.722 -29.973 77.517 1.00 88.56 ATOM 35 O PHE B 379 -56.676 -29.568 76.846 1.00 84.45 ATOM 36 CB PHE B 379 -56.758 -29.137 79.631 1.00 81.98 ATOM 37 CG PHE B 379 -56.561 -28.675 81.028 1.00 81.31 ATOM 38 CD1 PHE B 379 -56.655 -27.329 81.334 1.00 81.85 ATOM 39 CD2 PHE B 379 -56.238 -29.569 82.029 1.00 81.77 ATOM 40 CE1 PHE B 379 -56.456 -26.879 82.629 1.00 83.63 ATOM 41 CE2 PHE B 379 -56.054 -29.134 83.325 1.00 85.44 ATOM 42 CZ PHE B 379 -56.161 -27.786 83.631 1.00 84.76 ATOM 43 N GLN B 380 -54.938 -30.976 77.151 1.00106.89 ATOM 44 CA GLN B 380 -54.961 -31.497 75.799 1.00105.85 ATOM 45 C GLN B 380 -55.844 -32.728 75.732 1.00100.46 ATOM 46 O GLN B 380 -55.923 -33.514 76.683 1.00103.12 ATOM 47 CB GLN B 380 -53.555 -31.835 75.292 1.00112.02 ATOM 48 CG GLN B 380 -53.066 -30.902 74.176 1.00115.39 ATOM 49 CD GLN B 380 -53.654 -31.240 72.789 1.00113.30 ATOM 50 OE1 GLN B 380 -54.278 -32.300 72.583 1.00106.30 ATOM 51 NE2 GLN B 380 -53.472 -30.318 71.838 1.00115.72 ATOM 52 N CYS B 381 -56.529 -32.859 74.609 1.00 75.80 ATOM 53 CA CYS B 381 -57.342 -34.030 74.314 1.00 74.96 ATOM 54 C CYS B 381 -56.460 -35.110 73.684 1.00 79.27 ATOM 55 O CYS B 381 -55.945 -34.934 72.575 1.00 79.07 ATOM 56 CB CYS B 381 -58.485 -33.624 73.398 1.00 71.26 ATOM 57 SG CYS B 381 -59.554 -34.940 73.017 1.00 69.77 ATOM 58 N SER B 382 -56.246 -36.214 74.414 1.00 91.62 ATOM 59 CA SER B 382 -55.451 -37.337 73.912 1.00 97.65 ATOM 60 C SER B 382 -55.919 -37.840 72.555 1.00 94.25 ATOM 61 O SER B 382 -55.180 -38.563 71.876 1.00100.18 ATOM 62 CB SER B 382 -55.495 -38.493 74.908 1.00103.88 ATOM 63 OG SER B 382 -56.836 -38.818 75.228 1.00103.96 ATOM 64 N LEU B 383 -57.132 -37.480 72.157 1.00 87.39 ATOM 65 CA LEU B 383 -57.756 -37.998 70.956 1.00 83.27 ATOM 66 C LEU B 383 -57.825 -37.013 69.797 1.00 82.35 ATOM 67 O LEU B 383 -58.143 -37.448 68.685 1.00 82.56 ATOM 68 CB LEU B 383 -59.184 -38.463 71.288 1.00 77.65 ATOM 69 CG LEU B 383 -59.390 -39.910 71.733 1.00 81.04 ATOM 70 CD1 LEU B 383 -58.333 -40.349 72.708 1.00 90.52 ATOM 71 CD2 LEU B 383 -60.770 -40.067 72.328 1.00 79.80 ATOM 72 N CYS B 384 -57.538 -35.722 69.998 1.00 79.55 ATOM 73 CA CYS B 384 -57.552 -34.763 68.881 1.00 79.92 ATOM 74 C CYS B 384 -56.716 -33.541 69.266 1.00 81.86 ATOM 75 O CYS B 384 -56.039 -33.529 70.302 1.00 85.58 ATOM 76 CB CYS B 384 -58.981 -34.408 68.442 1.00 76.63 ATOM 77 SG CYS B 384 -59.965 -33.238 69.407 1.00 79.46 ATOM 78 N SER B 385 -56.784 -32.491 68.434 1.00 80.35 ATOM 79 CA SER B 385 -55.922 -31.319 68.597 1.00 82.34 ATOM 80 C SER B 385 -56.420 -30.333 69.644 1.00 82.78 ATOM 81 O SER B 385 -55.691 -29.398 69.972 1.00 89.38 ATOM 82 CB SER B 385 -55.730 -30.598 67.251 1.00 87.13 ATOM 83 OG SER B 385 -56.915 -30.582 66.465 1.00 88.90 ATOM 84 N TYR B 386 -57.642 -30.495 70.136 1.00 78.27 ATOM 85 CA TYR B 386 -58.236 -29.529 71.046 1.00 73.31 ATOM 86 C TYR B 386 -57.440 -29.444 72.341 1.00 74.52 ATOM 87 O TYR B 386 -56.820 -30.411 72.790 1.00 75.74 ATOM 88 CB TYR B 386 -59.675 -29.915 71.352 1.00 69.23 ATOM 89 CG TYR B 386 -60.365 -28.999 72.324 1.00 66.97 ATOM 90 CD1 TYR B 386 -60.611 -27.680 71.979 1.00 67.79 ATOM 91 CD2 TYR B 386 -60.814 -29.450 73.563 1.00 66.56 ATOM 92 CE1 TYR B 386 -61.276 -26.811 72.849 1.00 69.66 ATOM 93 CE2 TYR B 386 -61.483 -28.588 74.442 1.00 64.93 ATOM 94 CZ TYR B 386 -61.712 -27.272 74.074 1.00 64.13 ATOM 95 OH TYR B 386 -62.371 -26.407 74.905 1.00 61.34 ATOM 96 N ALA B 387 -57.475 -28.264 72.940 1.00 84.13 ATOM 97 CA ALA B 387 -56.802 -28.003 74.198 1.00 84.89 ATOM 98 C ALA B 387 -57.599 -26.925 74.911 1.00 87.73 ATOM 99 O ALA B 387 -57.861 -25.873 74.321 1.00 92.55 ATOM 100 CB ALA B 387 -55.354 -27.561 73.957 1.00 89.11 ATOM 101 N SER B 388 -57.987 -27.172 76.160 1.00 80.42 ATOM 102 CA SER B 388 -58.904 -26.273 76.839 1.00 79.64 ATOM 103 C SER B 388 -58.188 -25.422 77.881 1.00 81.80 ATOM 104 O SER B 388 -57.078 -25.730 78.327 1.00 80.07 ATOM 105 CB SER B 388 -60.021 -27.048 77.520 1.00 79.31 ATOM 106 OG SER B 388 -60.240 -26.503 78.802 1.00 79.16 ATOM 107 N ARG B 389 -58.834 -24.300 78.226 1.00 92.54 ATOM 108 CA ARG B 389 -58.296 -23.383 79.229 1.00 92.29 ATOM 109 C ARG B 389 -58.469 -23.921 80.641 1.00 85.14 ATOM 110 O ARG B 389 -57.786 -23.464 81.566 1.00 85.82 ATOM 111 CB ARG B 389 -58.934 -21.993 79.098 1.00 96.55 ATOM 112 CG ARG B 389 -58.844 -21.425 77.687 1.00100.99 ATOM 113 CD ARG B 389 -58.730 -19.896 77.648 1.00104.37 ATOM 114 NE ARG B 389 -57.888 -19.419 76.540 1.00107.21 ATOM 115 CZ ARG B 389 -58.303 -19.134 75.299 1.00106.86 ATOM 116 NH1 ARG B 389 -59.581 -19.263 74.932 1.00101.98 ATOM 117 NH2 ARG B 389 -57.412 -18.707 74.407 1.00113.61 ATOM 118 N ASP B 390 -59.447 -24.787 80.858 1.00 68.96 ATOM 119 CA ASP B 390 -59.692 -25.298 82.190 1.00 71.97 ATOM 120 C ASP B 390 -60.168 -26.743 82.097 1.00 71.02 ATOM 121 O ASP B 390 -60.504 -27.247 81.019 1.00 71.69 ATOM 122 CB ASP B 390 -60.714 -24.418 82.908 1.00 71.06 ATOM 123 CG ASP B 390 -62.129 -24.803 82.571 1.00 69.07 ATOM 124 OD1 ASP B 390 -62.964 -24.837 83.503 1.00 68.91 ATOM 125 OD2 ASP B 390 -62.395 -25.124 81.387 1.00 67.83 ATOM 126 N THR B 391 -60.312 -27.373 83.261 1.00 73.59 ATOM 127 CA THR B 391 -60.595 -28.803 83.304 1.00 73.88 ATOM 128 C THR B 391 -61.998 -29.128 82.778 1.00 71.98 ATOM 129 O THR B 391 -62.190 -30.160 82.117 1.00 67.86 ATOM 130 CB THR B 391 -60.406 -29.328 84.735 1.00 75.12 ATOM 131 OG1 THR B 391 -61.615 -29.123 85.483 1.00 75.59 ATOM 132 CG2 THR B 391 -59.248 -28.604 85.430 1.00 75.84 ATOM 133 N TYR B 392 -62.997 -28.281 83.067 1.00 66.71 ATOM 134 CA TYR B 392 -64.373 -28.660 82.728 1.00 64.08 ATOM 135 C TYR B 392 -64.608 -28.690 81.223 1.00 64.04 ATOM 136 O TYR B 392 -65.276 -29.601 80.717 1.00 58.95 ATOM 137 CB TYR B 392 -65.392 -27.705 83.348 1.00 57.67 ATOM 138 CG TYR B 392 -66.819 -28.048 82.932 1.00 54.98 ATOM 139 CD1 TYR B 392 -67.414 -29.214 83.370 1.00 59.06 ATOM 140 CD2 TYR B 392 -67.556 -27.228 82.088 1.00 52.66 ATOM 141 CE1 TYR B 392 -68.689 -29.560 83.014 1.00 57.07 ATOM 142 CE2 TYR B 392 -68.862 -27.567 81.714 1.00 58.14 ATOM 143 CZ TYR B 392 -69.422 -28.747 82.187 1.00 60.88 ATOM 144 OH TYR B 392 -70.711 -29.164 81.865 1.00 62.75 ATOM 145 N LYS B 393 -64.094 -27.683 80.501 1.00 61.15 ATOM 146 CA LYS B 393 -64.296 -27.608 79.058 1.00 58.29 ATOM 147 C LYS B 393 -63.689 -28.812 78.352 1.00 56.91 ATOM 148 O LYS B 393 -64.208 -29.259 77.332 1.00 62.74 ATOM 149 CB LYS B 393 -63.747 -26.272 78.539 1.00 60.88 ATOM 150 CG LYS B 393 -64.850 -25.218 78.381 1.00 59.16 ATOM 151 CD LYS B 393 -64.397 -23.823 78.802 1.00 59.07 ATOM 152 CE LYS B 393 -63.380 -23.223 77.867 1.00 66.08 ATOM 153 NZ LYS B 393 -62.813 -21.896 78.356 1.00 73.52 ATOM 154 N LEU B 394 -62.653 -29.413 78.920 1.00 70.83 ATOM 155 CA LEU B 394 -62.142 -30.630 78.303 1.00 73.67 ATOM 156 C LEU B 394 -63.036 -31.835 78.565 1.00 73.51 ATOM 157 O LEU B 394 -63.306 -32.623 77.645 1.00 78.28 ATOM 158 CB LEU B 394 -60.721 -30.914 78.776 1.00 73.94 ATOM 159 CG LEU B 394 -60.081 -32.188 78.237 1.00 76.96 ATOM 160 CD1 LEU B 394 -60.059 -32.183 76.728 1.00 76.08 ATOM 161 CD2 LEU B 394 -58.671 -32.221 78.766 1.00 86.39 ATOM 162 N LYS B 395 -63.475 -32.022 79.806 1.00 76.59 ATOM 163 CA LYS B 395 -64.398 -33.125 80.057 1.00 75.44 ATOM 164 C LYS B 395 -65.685 -32.983 79.235 1.00 71.14 ATOM 165 O LYS B 395 -66.250 -33.988 78.789 1.00 73.21 ATOM 166 CB LYS B 395 -64.650 -33.269 81.564 1.00 78.00 ATOM 167 CG LYS B 395 -65.294 -34.647 81.901 1.00 87.47 ATOM 168 CD LYS B 395 -65.710 -34.785 83.374 1.00 92.77 ATOM 169 CE LYS B 395 -64.477 -35.105 84.254 1.00 91.70 ATOM 170 NZ LYS B 395 -64.707 -34.909 85.744 1.00 81.86 ATOM 171 N ARG B 396 -66.136 -31.748 78.991 1.00 57.72 ATOM 172 CA ARG B 396 -67.304 -31.527 78.137 1.00 52.34 ATOM 173 C ARG B 396 -66.968 -31.774 76.678 1.00 51.65 ATOM 174 O ARG B 396 -67.819 -32.244 75.915 1.00 58.25 ATOM 175 CB ARG B 396 -67.860 -30.100 78.306 1.00 49.55 ATOM 176 CG ARG B 396 -69.175 -29.785 77.575 1.00 49.66 ATOM 177 CD ARG B 396 -69.561 -28.336 77.775 1.00 48.48 ATOM 178 NE ARG B 396 -68.665 -27.439 77.060 1.00 51.56 ATOM 179 CZ ARG B 396 -68.706 -26.115 77.125 1.00 54.20 ATOM 180 NH1 ARG B 396 -69.586 -25.498 77.887 1.00 52.75 ATOM 181 NH2 ARG B 396 -67.835 -25.403 76.439 1.00 60.37 ATOM 182 N HIS B 397 -65.729 -31.515 76.280 1.00 64.29 ATOM 183 CA HIS B 397 -65.335 -31.841 74.918 1.00 65.74 ATOM 184 C HIS B 397 -65.367 -33.342 74.681 1.00 65.14 ATOM 185 O HIS B 397 -65.778 -33.785 73.599 1.00 64.71 ATOM 186 CB HIS B 397 -63.939 -31.286 74.640 1.00 63.73 ATOM 187 CG HIS B 397 -63.307 -31.858 73.419 1.00 68.95 ATOM 188 ND1 HIS B 397 -63.749 -31.558 72.150 1.00 69.93 ATOM 189 CD2 HIS B 397 -62.259 -32.704 73.267 1.00 72.85 ATOM 190 CE1 HIS B 397 -63.004 -32.200 71.266 1.00 73.40 ATOM 191 NE2 HIS B 397 -62.091 -32.899 71.917 1.00 75.25 ATOM 192 N MET B 398 -65.036 -34.130 75.712 1.00 62.28 ATOM 193 CA MET B 398 -64.979 -35.584 75.579 1.00 62.83 ATOM 194 C MET B 398 -66.299 -36.171 75.085 1.00 61.15 ATOM 195 O MET B 398 -66.321 -37.292 74.548 1.00 66.35 ATOM 196 CB MET B 398 -64.605 -36.237 76.907 1.00 69.44 ATOM 197 CG MET B 398 -63.119 -36.297 77.185 1.00 72.10 ATOM 198 SD MET B 398 -62.107 -36.481 75.711 1.00 75.91 ATOM 199 CE MET B 398 -60.529 -35.965 76.401 1.00 77.02 ATOM 200 N ARG B 399 -67.406 -35.471 75.332 1.00 60.08 ATOM 201 CA ARG B 399 -68.700 -35.897 74.815 1.00 64.88 ATOM 202 C ARG B 399 -68.702 -35.977 73.296 1.00 60.84 ATOM 203 O ARG B 399 -69.448 -36.784 72.726 1.00 62.25 ATOM 204 CB ARG B 399 -69.805 -34.945 75.263 1.00 60.62 ATOM 205 CG ARG B 399 -69.877 -34.684 76.747 1.00 60.24 ATOM 206 CD ARG B 399 -71.307 -34.451 77.205 1.00 55.38 ATOM 207 NE ARG B 399 -71.480 -33.185 77.906 1.00 55.65 ATOM 208 CZ ARG B 399 -71.038 -32.949 79.126 1.00 60.40 ATOM 209 NH1 ARG B 399 -70.381 -33.882 79.791 1.00 65.16 ATOM 210 NH2 ARG B 399 -71.250 -31.774 79.675 1.00 60.83 ATOM 211 N THR B 400 -67.928 -35.124 72.607 1.00 63.37 ATOM 212 CA THR B 400 -67.978 -35.203 71.151 1.00 66.50 ATOM 213 C THR B 400 -67.330 -36.478 70.644 1.00 70.84 ATOM 214 O THR B 400 -67.641 -36.924 69.538 1.00 76.30 ATOM 215 CB THR B 400 -67.297 -34.021 70.475 1.00 61.33 ATOM 216 OG1 THR B 400 -65.879 -34.202 70.541 1.00 66.35 ATOM 217 CG2 THR B 400 -67.651 -32.744 71.166 1.00 60.03 ATOM 218 N HIS B 401 -66.388 -37.042 71.388 1.00 66.59 ATOM 219 CA HIS B 401 -65.828 -38.313 70.958 1.00 70.51 ATOM 220 C HIS B 401 -66.708 -39.485 71.362 1.00 74.58 ATOM 221 O HIS B 401 -66.909 -40.420 70.575 1.00 77.57 ATOM 222 CB HIS B 401 -64.423 -38.474 71.516 1.00 70.65 ATOM 223 CG HIS B 401 -63.473 -37.463 70.978 1.00 68.78 ATOM 224 ND1 HIS B 401 -63.698 -36.804 69.792 1.00 75.45 ATOM 225 CD2 HIS B 401 -62.314 -36.971 71.466 1.00 68.10 ATOM 226 CE1 HIS B 401 -62.712 -35.955 69.565 1.00 73.88 ATOM 227 NE2 HIS B 401 -61.854 -36.041 70.564 1.00 71.95 ATOM 228 N SER B 402 -67.195 -39.477 72.604 1.00 72.86 ATOM 229 CA SER B 402 -68.046 -40.574 73.043 1.00 74.02 ATOM 230 C SER B 402 -69.417 -40.512 72.395 1.00 71.26 ATOM 231 O SER B 402 -70.098 -41.540 72.301 1.00 78.55 ATOM 232 CB SER B 402 -68.190 -40.566 74.559 1.00 77.24 ATOM 233 OG SER B 402 -68.872 -39.401 74.965 1.00 73.47 ATOM 234 N GLY B 403 -69.865 -39.317 72.009 1.00 63.43 ATOM 235 CA GLY B 403 -71.236 -39.150 71.562 1.00 66.88 ATOM 236 C GLY B 403 -72.269 -39.178 72.673 1.00 63.18 ATOM 237 O GLY B 403 -73.457 -39.355 72.388 1.00 62.32 ATOM 238 N GLU B 404 -71.853 -39.020 73.929 1.00 40.83 ATOM 239 CA GLU B 404 -72.785 -39.121 75.054 1.00 51.42 ATOM 240 C GLU B 404 -73.753 -37.943 75.069 1.00 58.90 ATOM 241 O GLU B 404 -73.427 -36.837 74.634 1.00 78.03 ATOM 242 CB GLU B 404 -72.017 -39.232 76.382 1.00 49.06 ATOM 243 CG GLU B 404 -72.844 -39.593 77.593 1.00 58.70 ATOM 244 CD GLU B 404 -72.019 -39.657 78.892 1.00 72.31 ATOM 245 OE1 GLU B 404 -70.787 -39.396 78.824 1.00 78.35 ATOM 246 OE2 GLU B 404 -72.603 -39.955 79.974 1.00 61.48 ATOM 247 ZN ZN B 503 -60.696 -34.138 71.247 1.00 71.12 TER