HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 5YEF TITLE Crystal structure of CTCF ZFs2-8-Hs5-1aE COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B, G, J; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.81 ANGSTORMS DBREF 5YEF G 292 490 UNP P49711 CTCF_HUMAN 292 490 SEQRES 1 G 26 PRO HIS LYS CYS PRO ASP CYS ASP MET ALA PHE VAL THR SEQRES 2 G 26 SER GLY GLU LEU VAL ARG HIS ARG ARG TYR LYS HIS THR SEQRES 3 J 30 HIS SER GLY GLU ATOM 1 N PRO G 321 -34.679 13.134 112.872 1.00131.81 ATOM 2 CA PRO G 321 -33.489 12.292 112.916 1.00130.25 ATOM 3 C PRO G 321 -32.378 12.867 112.057 1.00144.29 ATOM 4 O PRO G 321 -32.644 13.454 111.002 1.00177.83 ATOM 5 CB PRO G 321 -33.821 10.875 112.451 1.00115.06 ATOM 6 N HIS G 322 -31.127 12.701 112.493 1.00150.16 ATOM 7 CA HIS G 322 -30.033 13.365 111.806 1.00136.81 ATOM 8 C HIS G 322 -28.842 12.449 111.497 1.00141.04 ATOM 9 O HIS G 322 -27.713 12.941 111.446 1.00140.10 ATOM 10 CB HIS G 322 -29.569 14.593 112.604 1.00126.61 ATOM 11 N LYS G 323 -29.037 11.145 111.262 1.00141.29 ATOM 12 CA LYS G 323 -27.880 10.277 111.025 1.00137.61 ATOM 13 C LYS G 323 -28.312 8.944 110.429 1.00137.89 ATOM 14 O LYS G 323 -29.430 8.486 110.654 1.00138.42 ATOM 15 CB LYS G 323 -27.072 10.046 112.303 1.00135.10 ATOM 16 N CYS G 324 -27.368 8.301 109.723 1.00115.26 ATOM 17 CA CYS G 324 -27.506 7.006 109.066 1.00111.18 ATOM 18 C CYS G 324 -26.527 6.037 109.700 1.00111.80 ATOM 19 O CYS G 324 -25.335 6.370 109.823 1.00118.01 ATOM 20 CB CYS G 324 -27.222 7.130 107.570 1.00109.69 ATOM 21 SG CYS G 324 -27.574 5.649 106.616 1.00112.60 ATOM 22 N PRO G 325 -26.954 4.818 110.043 1.00132.09 ATOM 23 CA PRO G 325 -26.102 3.978 110.907 1.00128.91 ATOM 24 C PRO G 325 -24.808 3.550 110.252 1.00139.81 ATOM 25 O PRO G 325 -23.746 3.583 110.888 1.00142.49 ATOM 26 CB PRO G 325 -27.006 2.774 111.213 1.00122.32 ATOM 27 CG PRO G 325 -27.839 2.655 109.949 1.00123.58 ATOM 28 CD PRO G 325 -28.169 4.096 109.636 1.00122.44 ATOM 29 N ASP G 326 -24.887 3.075 109.024 1.00162.43 ATOM 30 CA ASP G 326 -23.718 2.594 108.310 1.00148.37 ATOM 31 C ASP G 326 -23.281 3.541 107.185 1.00158.00 ATOM 32 O ASP G 326 -22.612 3.104 106.239 1.00165.93 ATOM 33 CB ASP G 326 -23.993 1.184 107.777 1.00131.21 ATOM 34 N CYS G 327 -23.704 4.808 107.215 1.00115.29 ATOM 35 CA CYS G 327 -23.328 5.730 106.156 1.00121.14 ATOM 36 C CYS G 327 -22.849 7.074 106.713 1.00126.25 ATOM 37 O CYS G 327 -22.784 7.296 107.930 1.00131.74 ATOM 38 CB CYS G 327 -24.478 5.909 105.172 1.00126.17 ATOM 39 SG CYS G 327 -24.076 7.111 103.907 1.00143.09 ATOM 40 N ASP G 328 -22.570 7.989 105.769 1.00144.35 ATOM 41 CA ASP G 328 -21.898 9.265 106.002 1.00141.65 ATOM 42 C ASP G 328 -22.787 10.322 106.670 1.00140.31 ATOM 43 O ASP G 328 -22.369 10.948 107.650 1.00141.34 ATOM 44 CB ASP G 328 -21.367 9.796 104.672 1.00140.39 ATOM 45 N MET G 329 -23.985 10.589 106.146 1.00142.19 ATOM 46 CA MET G 329 -24.701 11.773 106.623 1.00141.09 ATOM 47 C MET G 329 -26.174 11.753 106.226 1.00145.73 ATOM 48 O MET G 329 -26.551 11.137 105.223 1.00153.94 ATOM 49 CB MET G 329 -24.037 13.058 106.096 1.00136.27 ATOM 50 N ALA G 330 -26.998 12.452 107.024 1.00110.03 ATOM 51 CA ALA G 330 -28.292 12.950 106.556 1.00113.45 ATOM 52 C ALA G 330 -28.634 14.231 107.298 1.00119.79 ATOM 53 O ALA G 330 -27.900 14.662 108.192 1.00116.61 ATOM 54 CB ALA G 330 -29.408 11.919 106.729 1.00111.58 ATOM 55 N PHE G 331 -29.754 14.850 106.904 1.00139.67 ATOM 56 CA PHE G 331 -30.259 16.111 107.445 1.00141.75 ATOM 57 C PHE G 331 -31.355 15.888 108.475 1.00136.88 ATOM 58 O PHE G 331 -31.934 14.807 108.608 1.00130.38 ATOM 59 CB PHE G 331 -30.784 17.017 106.321 1.00144.86 ATOM 60 N VAL G 332 -31.663 16.978 109.175 1.00154.52 ATOM 61 CA VAL G 332 -32.663 16.969 110.225 1.00165.98 ATOM 62 C VAL G 332 -34.064 16.697 109.733 1.00167.38 ATOM 63 O VAL G 332 -34.958 16.514 110.570 1.00166.69 ATOM 64 N THR G 333 -34.277 16.629 108.413 1.00121.66 ATOM 65 CA THR G 333 -35.602 16.337 107.878 1.00125.89 ATOM 66 C THR G 333 -36.155 14.992 108.329 1.00130.94 ATOM 67 O THR G 333 -37.363 14.755 108.179 1.00133.95 ATOM 68 CB THR G 333 -35.555 16.403 106.343 1.00120.63 ATOM 69 N SER G 334 -35.312 14.109 108.872 1.00173.11 ATOM 70 CA SER G 334 -35.761 12.792 109.327 1.00154.33 ATOM 71 C SER G 334 -36.379 11.990 108.187 1.00139.64 ATOM 72 O SER G 334 -35.846 10.945 107.789 1.00135.53 ATOM 73 CB SER G 334 -36.761 12.932 110.477 1.00152.94 ATOM 74 N GLY G 335 -37.529 12.451 107.682 1.00131.87 ATOM 75 CA GLY G 335 -38.195 11.736 106.601 1.00132.01 ATOM 76 C GLY G 335 -37.307 11.689 105.370 1.00133.12 ATOM 77 O GLY G 335 -37.316 10.704 104.621 1.00123.47 ATOM 78 N GLU G 336 -36.505 12.741 105.165 1.00140.77 ATOM 79 CA GLU G 336 -35.575 12.755 104.048 1.00138.32 ATOM 80 C GLU G 336 -34.556 11.634 104.191 1.00124.14 ATOM 81 O GLU G 336 -34.249 10.935 103.217 1.00117.79 ATOM 82 CB GLU G 336 -34.885 14.116 103.940 1.00141.53 ATOM 83 N LEU G 337 -34.037 11.423 105.406 1.00123.23 ATOM 84 CA LEU G 337 -33.152 10.284 105.622 1.00119.35 ATOM 85 C LEU G 337 -33.849 8.985 105.253 1.00111.74 ATOM 86 O LEU G 337 -33.223 8.064 104.721 1.00104.33 ATOM 87 CB LEU G 337 -32.657 10.217 107.069 1.00129.60 ATOM 88 CG LEU G 337 -31.885 8.911 107.316 1.00146.01 ATOM 89 CD1 LEU G 337 -30.658 9.130 108.121 1.00155.80 ATOM 90 CD2 LEU G 337 -32.758 7.862 107.982 1.00141.23 ATOM 91 N VAL G 338 -35.149 8.890 105.525 1.00111.75 ATOM 92 CA VAL G 338 -35.868 7.672 105.184 1.00110.42 ATOM 93 C VAL G 338 -35.819 7.469 103.681 1.00109.43 ATOM 94 O VAL G 338 -35.583 6.359 103.191 1.00112.77 ATOM 95 CB VAL G 338 -37.313 7.724 105.693 1.00110.21 ATOM 96 CG1 VAL G 338 -38.081 6.524 105.169 1.00106.03 ATOM 97 CG2 VAL G 338 -37.321 7.789 107.217 1.00113.17 ATOM 98 N ARG G 339 -36.043 8.537 102.919 1.00111.47 ATOM 99 CA ARG G 339 -35.931 8.415 101.475 1.00101.14 ATOM 100 C ARG G 339 -34.482 8.150 101.062 1.00 90.28 ATOM 101 O ARG G 339 -34.244 7.418 100.103 1.00 96.30 ATOM 102 CB ARG G 339 -36.492 9.657 100.795 1.00 94.76 ATOM 103 CG ARG G 339 -36.812 9.459 99.321 1.00 85.05 ATOM 104 CD ARG G 339 -37.150 10.774 98.631 1.00 85.17 ATOM 105 NE ARG G 339 -36.363 11.911 99.112 1.00 89.40 ATOM 106 CZ ARG G 339 -36.611 13.174 98.765 1.00 92.47 ATOM 107 NH1 ARG G 339 -37.603 13.440 97.922 1.00 90.95 ATOM 108 NH2 ARG G 339 -35.867 14.171 99.239 1.00 89.20 ATOM 109 N HIS G 340 -33.498 8.719 101.767 1.00 86.23 ATOM 110 CA HIS G 340 -32.109 8.370 101.478 1.00 79.32 ATOM 111 C HIS G 340 -31.910 6.867 101.605 1.00 90.51 ATOM 112 O HIS G 340 -31.319 6.227 100.729 1.00 92.19 ATOM 113 CB HIS G 340 -31.168 9.100 102.442 1.00 70.89 ATOM 114 CG HIS G 340 -29.772 8.551 102.471 1.00 83.45 ATOM 115 ND1 HIS G 340 -28.727 9.090 101.746 1.00 93.88 ATOM 116 CD2 HIS G 340 -29.277 7.445 103.080 1.00 93.51 ATOM 117 CE1 HIS G 340 -27.635 8.377 101.966 1.00100.36 ATOM 118 NE2 HIS G 340 -27.947 7.365 102.760 1.00100.75 ATOM 119 N ARG G 341 -32.416 6.285 102.700 1.00 88.07 ATOM 120 CA ARG G 341 -32.331 4.847 102.870 1.00 88.84 ATOM 121 C ARG G 341 -33.035 4.153 101.723 1.00 80.87 ATOM 122 O ARG G 341 -32.574 3.122 101.228 1.00 71.12 ATOM 123 CB ARG G 341 -32.955 4.432 104.199 1.00 89.72 ATOM 124 N ARG G 342 -34.159 4.723 101.282 1.00101.60 ATOM 125 CA ARG G 342 -34.899 4.153 100.171 1.00104.20 ATOM 126 C ARG G 342 -34.098 4.196 98.879 1.00105.89 ATOM 127 O ARG G 342 -34.258 3.317 98.026 1.00107.79 ATOM 128 CB ARG G 342 -36.249 4.837 100.006 1.00106.62 ATOM 129 CG ARG G 342 -37.247 4.512 101.130 1.00117.46 ATOM 130 CD ARG G 342 -37.733 3.099 100.918 1.00127.01 ATOM 131 NE ARG G 342 -38.556 2.458 101.959 1.00134.80 ATOM 132 CZ ARG G 342 -39.891 2.455 101.994 1.00133.24 ATOM 133 NH1 ARG G 342 -40.519 1.826 102.981 1.00132.22 ATOM 134 NH2 ARG G 342 -40.591 3.019 101.015 1.00128.85 ATOM 135 N TYR G 343 -33.269 5.218 98.687 1.00 94.71 ATOM 136 CA TYR G 343 -32.517 5.369 97.445 1.00 93.55 ATOM 137 C TYR G 343 -31.258 4.529 97.433 1.00 84.55 ATOM 138 O TYR G 343 -31.091 3.666 96.567 1.00 82.14 ATOM 139 CB TYR G 343 -32.175 6.838 97.245 1.00102.75 ATOM 140 CG TYR G 343 -33.182 7.560 96.402 1.00109.56 ATOM 141 CD1 TYR G 343 -33.413 8.908 96.579 1.00107.77 ATOM 142 CD2 TYR G 343 -33.949 6.876 95.470 1.00121.44 ATOM 143 CE1 TYR G 343 -34.351 9.572 95.817 1.00113.37 ATOM 144 CE2 TYR G 343 -34.877 7.529 94.699 1.00124.72 ATOM 145 CZ TYR G 343 -35.085 8.874 94.885 1.00121.00 ATOM 146 OH TYR G 343 -36.030 9.523 94.131 1.00121.80 ATOM 147 N LYS G 344 -30.370 4.760 98.399 1.00 90.75 ATOM 148 CA LYS G 344 -29.002 4.254 98.341 1.00 94.25 ATOM 149 C LYS G 344 -28.749 2.952 99.091 1.00 95.28 ATOM 150 O LYS G 344 -27.716 2.329 98.836 1.00101.70 ATOM 151 CB LYS G 344 -28.019 5.333 98.842 1.00 95.10 ATOM 152 CG LYS G 344 -27.631 6.394 97.791 1.00107.09 ATOM 153 CD LYS G 344 -26.582 7.387 98.334 1.00120.17 ATOM 154 CE LYS G 344 -26.439 8.658 97.478 1.00120.31 ATOM 155 NZ LYS G 344 -25.742 9.754 98.244 1.00122.11 ATOM 156 N HIS G 345 -29.629 2.520 99.990 1.00 87.41 ATOM 157 CA HIS G 345 -29.391 1.287 100.750 1.00 84.11 ATOM 158 C HIS G 345 -30.504 0.258 100.557 1.00 80.25 ATOM 159 O HIS G 345 -30.228 -0.865 100.121 1.00 76.24 ATOM 160 CB HIS G 345 -29.217 1.592 102.252 1.00 84.68 ATOM 161 CG HIS G 345 -28.241 2.693 102.574 1.00 83.70 ATOM 162 ND1 HIS G 345 -26.883 2.582 102.352 1.00 96.26 ATOM 163 CD2 HIS G 345 -28.426 3.918 103.128 1.00 71.99 ATOM 164 CE1 HIS G 345 -26.275 3.688 102.754 1.00 99.36 ATOM 165 NE2 HIS G 345 -27.190 4.514 103.229 1.00 87.47 ATOM 166 N THR G 346 -31.750 0.581 100.897 1.00 65.29 ATOM 167 CA THR G 346 -32.888 -0.308 100.657 1.00 72.64 ATOM 168 C THR G 346 -33.651 0.200 99.448 1.00106.90 ATOM 169 O THR G 346 -34.294 1.250 99.521 1.00130.10 ATOM 170 CB THR G 346 -33.865 -0.365 101.827 1.00 78.50 ATOM 171 OG1 THR G 346 -35.153 -0.707 101.317 1.00 84.18 ATOM 172 CG2 THR G 346 -33.996 0.973 102.524 1.00 98.42 ATOM 173 ZN ZN G 501 -26.397 6.079 104.019 1.00 78.50 TER 174 O ARG J 396 -67.898 23.157 80.965 1.00 61.75 ATOM 175 CB ARG J 396 -67.855 21.046 78.506 1.00 50.14 ATOM 176 CG ARG J 396 -69.166 20.758 79.131 1.00 48.79 ATOM 177 CD ARG J 396 -69.517 19.341 78.897 1.00 48.35 ATOM 178 NE ARG J 396 -68.627 18.474 79.653 1.00 51.10 ATOM 179 CZ ARG J 396 -68.692 17.150 79.653 1.00 51.61 ATOM 180 NH1 ARG J 396 -69.613 16.527 78.938 1.00 52.65 ATOM 181 NH2 ARG J 396 -67.827 16.449 80.367 1.00 54.08 ATOM 182 N HIS J 397 -65.783 22.464 80.607 1.00 64.68 ATOM 183 CA HIS J 397 -65.352 22.808 81.953 1.00 61.24 ATOM 184 C HIS J 397 -65.357 24.314 82.172 1.00 63.93 ATOM 185 O HIS J 397 -65.654 24.771 83.284 1.00 67.29 ATOM 186 CB HIS J 397 -63.963 22.229 82.192 1.00 65.40 ATOM 187 CG HIS J 397 -63.255 22.817 83.362 1.00 70.90 ATOM 188 ND1 HIS J 397 -63.614 22.555 84.665 1.00 70.78 ATOM 189 CD2 HIS J 397 -62.209 23.674 83.422 1.00 72.33 ATOM 190 CE1 HIS J 397 -62.807 23.213 85.480 1.00 72.57 ATOM 191 NE2 HIS J 397 -61.945 23.901 84.750 1.00 76.46 ATOM 192 N MET J 398 -65.067 25.096 81.121 1.00 60.41 ATOM 193 CA MET J 398 -65.012 26.553 81.256 1.00 63.97 ATOM 194 C MET J 398 -66.311 27.128 81.798 1.00 63.37 ATOM 195 O MET J 398 -66.305 28.207 82.410 1.00 68.85 ATOM 196 CB MET J 398 -64.690 27.211 79.918 1.00 67.51 ATOM 197 CG MET J 398 -63.280 27.723 79.762 1.00 74.16 ATOM 198 SD MET J 398 -62.055 27.065 80.916 1.00 77.37 ATOM 199 CE MET J 398 -60.547 27.397 80.010 1.00 71.11 ATOM 200 N ARG J 399 -67.435 26.445 81.558 1.00 62.15 ATOM 201 CA ARG J 399 -68.708 26.895 82.111 1.00 65.45 ATOM 202 C ARG J 399 -68.685 26.949 83.646 1.00 62.07 ATOM 203 O ARG J 399 -69.307 27.832 84.254 1.00 59.31 ATOM 204 CB ARG J 399 -69.822 25.969 81.644 1.00 61.00 ATOM 205 CG ARG J 399 -69.878 25.737 80.158 1.00 62.61 ATOM 206 CD ARG J 399 -71.298 25.471 79.731 1.00 60.71 ATOM 207 NE ARG J 399 -71.461 24.198 79.033 1.00 58.02 ATOM 208 CZ ARG J 399 -71.069 23.970 77.792 1.00 58.21 ATOM 209 NH1 ARG J 399 -70.472 24.923 77.096 1.00 59.96 ATOM 210 NH2 ARG J 399 -71.274 22.789 77.255 1.00 55.99 ATOM 211 N THR J 400 -67.961 26.033 84.300 1.00 57.99 ATOM 212 CA THR J 400 -67.973 26.077 85.760 1.00 60.08 ATOM 213 C THR J 400 -67.285 27.335 86.276 1.00 65.75 ATOM 214 O THR J 400 -67.504 27.734 87.424 1.00 64.88 ATOM 215 CB THR J 400 -67.287 24.869 86.372 1.00 58.29 ATOM 216 OG1 THR J 400 -65.869 25.037 86.264 1.00 65.05 ATOM 217 CG2 THR J 400 -67.692 23.607 85.654 1.00 55.53 ATOM 218 N HIS J 401 -66.383 27.911 85.486 1.00 70.41 ATOM 219 CA HIS J 401 -65.777 29.178 85.869 1.00 73.58 ATOM 220 C HIS J 401 -66.657 30.359 85.494 1.00 78.49 ATOM 221 O HIS J 401 -66.856 31.273 86.303 1.00 78.63 ATOM 222 CB HIS J 401 -64.409 29.305 85.211 1.00 78.22 ATOM 223 CG HIS J 401 -63.433 28.294 85.700 1.00 75.32 ATOM 224 ND1 HIS J 401 -63.109 28.167 87.030 1.00 73.57 ATOM 225 CD2 HIS J 401 -62.788 27.293 85.058 1.00 80.05 ATOM 226 CE1 HIS J 401 -62.254 27.168 87.179 1.00 74.10 ATOM 227 NE2 HIS J 401 -62.047 26.618 85.998 1.00 76.27 ATOM 228 N SER J 402 -67.165 30.368 84.258 1.00 81.39 ATOM 229 CA SER J 402 -68.003 31.481 83.824 1.00 80.44 ATOM 230 C SER J 402 -69.375 31.452 84.474 1.00 74.80 ATOM 231 O SER J 402 -70.017 32.503 84.588 1.00 80.04 ATOM 232 CB SER J 402 -68.177 31.485 82.311 1.00 80.50 ATOM 233 OG SER J 402 -68.913 30.353 81.896 1.00 76.78 ATOM 234 N GLY J 403 -69.865 30.267 84.853 1.00 65.91 ATOM 235 CA GLY J 403 -71.241 30.123 85.302 1.00 76.16 ATOM 236 C GLY J 403 -72.279 30.162 84.197 1.00 76.25 ATOM 237 O GLY J 403 -73.467 30.331 84.483 1.00 68.39 ATOM 238 N GLU J 404 -71.865 30.007 82.941 1.00 56.15 ATOM 239 CA GLU J 404 -72.786 30.085 81.814 1.00 58.18 ATOM 240 C GLU J 404 -73.711 28.882 81.820 1.00 61.54 ATOM 241 O GLU J 404 -73.330 27.783 82.225 1.00 70.91 ATOM 242 CB GLU J 404 -72.012 30.183 80.491 1.00 66.95 ATOM 243 CG GLU J 404 -72.840 30.541 79.282 1.00 77.34 ATOM 244 CD GLU J 404 -72.023 30.585 77.967 1.00 82.48 ATOM 245 OE1 GLU J 404 -70.797 30.287 78.000 1.00 79.40 ATOM 246 OE2 GLU J 404 -72.602 30.939 76.901 1.00 77.85 ATOM 247 ZN ZN J 503 -60.843 25.188 85.625 1.00 89.51 TER