HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 5YEF TITLE Crystal structure of CTCF ZFs2-8-Hs5-1aE COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B, G, J; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.81 ANGSTORMS DBREF 5YEF G 292 490 UNP P49711 CTCF_HUMAN 292 490 SEQRES 1 G 30 GLY GLU ARG PRO PHE GLN CYS SER LEU CYS SER TYR ALA SEQRES 2 G 30 SER ARG ASP THR TYR LYS LEU LYS ARG HIS MET ARG THR SEQRES 3 G 30 HIS SER GLY GLU ATOM 1 N GLY G 375 -46.135 10.745 75.563 1.00117.02 ATOM 2 CA GLY G 375 -45.606 11.774 74.700 1.00107.69 ATOM 3 C GLY G 375 -45.888 13.202 75.136 1.00 97.50 ATOM 4 O GLY G 375 -45.616 14.121 74.355 1.00 97.08 ATOM 5 N GLU G 376 -46.441 13.418 76.342 1.00 82.50 ATOM 6 CA GLU G 376 -46.700 14.770 76.843 1.00 86.59 ATOM 7 C GLU G 376 -45.398 15.550 77.005 1.00103.92 ATOM 8 O GLU G 376 -44.404 15.037 77.530 1.00111.35 ATOM 9 CB GLU G 376 -47.425 14.732 78.186 1.00 92.58 ATOM 10 CG GLU G 376 -48.765 14.037 78.196 1.00 97.77 ATOM 11 CD GLU G 376 -49.052 13.447 79.571 1.00100.19 ATOM 12 OE1 GLU G 376 -49.329 14.240 80.503 1.00104.76 ATOM 13 OE2 GLU G 376 -48.955 12.201 79.732 1.00 86.80 ATOM 14 N ARG G 377 -45.407 16.799 76.542 1.00105.41 ATOM 15 CA ARG G 377 -44.270 17.716 76.669 1.00 98.42 ATOM 16 C ARG G 377 -44.739 19.040 77.279 1.00 82.54 ATOM 17 O ARG G 377 -44.757 20.080 76.610 1.00103.40 ATOM 18 CB ARG G 377 -43.618 17.930 75.298 1.00 92.20 ATOM 19 CG ARG G 377 -43.132 16.640 74.632 1.00102.32 ATOM 20 CD ARG G 377 -42.500 16.911 73.275 1.00104.56 ATOM 21 NE ARG G 377 -42.060 15.694 72.589 1.00103.83 ATOM 22 CZ ARG G 377 -40.782 15.385 72.384 1.00100.21 ATOM 23 NH1 ARG G 377 -39.842 16.213 72.805 1.00101.61 ATOM 24 NH2 ARG G 377 -40.440 14.264 71.758 1.00101.36 ATOM 25 N PRO G 378 -45.101 19.046 78.558 1.00113.60 ATOM 26 CA PRO G 378 -45.742 20.244 79.122 1.00 92.98 ATOM 27 C PRO G 378 -44.829 21.412 79.479 1.00100.15 ATOM 28 O PRO G 378 -45.077 22.039 80.516 1.00108.63 ATOM 29 CB PRO G 378 -46.418 19.700 80.386 1.00 88.60 ATOM 30 CG PRO G 378 -45.718 18.485 80.726 1.00 80.48 ATOM 31 CD PRO G 378 -45.155 17.902 79.486 1.00 91.79 ATOM 32 N PHE G 379 -43.799 21.729 78.678 1.00116.12 ATOM 33 CA PHE G 379 -42.895 22.848 78.991 1.00112.09 ATOM 34 C PHE G 379 -42.353 23.483 77.713 1.00112.29 ATOM 35 O PHE G 379 -41.461 22.916 77.073 1.00110.71 ATOM 36 CB PHE G 379 -41.733 22.409 79.892 1.00110.15 ATOM 37 CG PHE G 379 -42.142 22.054 81.298 1.00110.50 ATOM 38 CD1 PHE G 379 -42.244 20.730 81.697 1.00112.27 ATOM 39 CD2 PHE G 379 -42.406 23.053 82.223 1.00110.90 ATOM 40 CE1 PHE G 379 -42.613 20.411 82.989 1.00115.58 ATOM 41 CE2 PHE G 379 -42.781 22.740 83.513 1.00116.02 ATOM 42 CZ PHE G 379 -42.884 21.419 83.898 1.00118.14 ATOM 43 N GLN G 380 -42.848 24.676 77.375 1.00120.73 ATOM 44 CA GLN G 380 -42.532 25.359 76.124 1.00119.86 ATOM 45 C GLN G 380 -41.437 26.404 76.304 1.00113.50 ATOM 46 O GLN G 380 -41.339 27.059 77.346 1.00112.75 ATOM 47 CB GLN G 380 -43.765 26.053 75.538 1.00122.13 ATOM 48 CG GLN G 380 -44.254 25.512 74.203 1.00124.52 ATOM 49 CD GLN G 380 -43.415 26.043 73.042 1.00124.77 ATOM 50 OE1 GLN G 380 -42.572 26.924 73.226 1.00122.41 ATOM 51 NE2 GLN G 380 -43.664 25.530 71.839 1.00126.65 ATOM 52 N CYS G 381 -40.611 26.554 75.268 1.00104.00 ATOM 53 CA CYS G 381 -39.611 27.619 75.215 1.00100.98 ATOM 54 C CYS G 381 -40.287 28.880 74.700 1.00103.70 ATOM 55 O CYS G 381 -40.616 28.975 73.515 1.00105.64 ATOM 56 CB CYS G 381 -38.431 27.255 74.312 1.00 97.91 ATOM 57 SG CYS G 381 -37.192 28.583 74.187 1.00 94.82 ATOM 58 N SER G 382 -40.453 29.867 75.586 1.00128.70 ATOM 59 CA SER G 382 -41.076 31.136 75.215 1.00131.99 ATOM 60 C SER G 382 -40.459 31.722 73.952 1.00128.43 ATOM 61 O SER G 382 -41.065 32.589 73.315 1.00134.75 ATOM 62 CB SER G 382 -40.962 32.120 76.388 1.00130.66 ATOM 63 OG SER G 382 -40.119 31.599 77.414 1.00124.07 ATOM 64 N LEU G 383 -39.281 31.242 73.571 1.00115.80 ATOM 65 CA LEU G 383 -38.516 31.735 72.445 1.00114.38 ATOM 66 C LEU G 383 -38.503 30.802 71.238 1.00113.41 ATOM 67 O LEU G 383 -38.036 31.225 70.178 1.00120.06 ATOM 68 CB LEU G 383 -37.074 32.016 72.902 1.00111.40 ATOM 69 CG LEU G 383 -36.667 33.409 73.406 1.00108.45 ATOM 70 CD1 LEU G 383 -37.778 34.035 74.239 1.00110.45 ATOM 71 CD2 LEU G 383 -35.359 33.305 74.237 1.00102.67 ATOM 72 N CYS G 384 -39.029 29.578 71.336 1.00110.49 ATOM 73 CA CYS G 384 -39.029 28.688 70.165 1.00113.30 ATOM 74 C CYS G 384 -40.160 27.665 70.295 1.00116.27 ATOM 75 O CYS G 384 -41.100 27.843 71.079 1.00119.67 ATOM 76 CB CYS G 384 -37.663 28.006 69.956 1.00116.80 ATOM 77 SG CYS G 384 -37.232 26.538 70.947 1.00123.05 ATOM 78 N SER G 385 -40.117 26.639 69.441 1.00114.12 ATOM 79 CA SER G 385 -41.130 25.595 69.380 1.00116.38 ATOM 80 C SER G 385 -40.882 24.409 70.315 1.00117.20 ATOM 81 O SER G 385 -41.788 23.585 70.471 1.00124.26 ATOM 82 CB SER G 385 -41.265 25.100 67.943 1.00117.78 ATOM 83 OG SER G 385 -40.312 25.734 67.114 1.00117.64 ATOM 84 N TYR G 386 -39.695 24.283 70.914 1.00112.15 ATOM 85 CA TYR G 386 -39.346 23.089 71.688 1.00112.40 ATOM 86 C TYR G 386 -40.278 22.884 72.890 1.00113.89 ATOM 87 O TYR G 386 -40.849 23.834 73.439 1.00114.61 ATOM 88 CB TYR G 386 -37.874 23.153 72.139 1.00109.20 ATOM 89 CG TYR G 386 -37.499 22.059 73.123 1.00108.14 ATOM 90 CD1 TYR G 386 -37.585 20.718 72.766 1.00110.69 ATOM 91 CD2 TYR G 386 -37.017 22.362 74.391 1.00105.30 ATOM 92 CE1 TYR G 386 -37.258 19.704 73.655 1.00110.64 ATOM 93 CE2 TYR G 386 -36.671 21.345 75.296 1.00105.60 ATOM 94 CZ TYR G 386 -36.795 20.014 74.915 1.00105.88 ATOM 95 OH TYR G 386 -36.459 18.980 75.774 1.00102.76 ATOM 96 N ALA G 387 -40.452 21.612 73.278 1.00105.47 ATOM 97 CA ALA G 387 -41.276 21.237 74.427 1.00107.99 ATOM 98 C ALA G 387 -40.729 19.965 75.077 1.00106.86 ATOM 99 O ALA G 387 -40.542 18.953 74.394 1.00107.14 ATOM 100 CB ALA G 387 -42.736 21.039 74.002 1.00113.27 ATOM 101 N SER G 388 -40.462 20.027 76.386 1.00115.48 ATOM 102 CA SER G 388 -39.754 18.982 77.123 1.00118.09 ATOM 103 C SER G 388 -40.652 18.226 78.107 1.00122.54 ATOM 104 O SER G 388 -41.726 18.689 78.499 1.00126.71 ATOM 105 CB SER G 388 -38.550 19.573 77.865 1.00115.71 ATOM 106 OG SER G 388 -38.895 19.980 79.170 1.00118.59 ATOM 107 N ARG G 389 -40.178 17.041 78.512 1.00118.60 ATOM 108 CA ARG G 389 -40.914 16.197 79.453 1.00122.27 ATOM 109 C ARG G 389 -40.890 16.744 80.877 1.00122.27 ATOM 110 O ARG G 389 -41.847 16.533 81.635 1.00128.02 ATOM 111 CB ARG G 389 -40.332 14.779 79.425 1.00123.35 ATOM 112 CG ARG G 389 -40.267 14.203 78.027 1.00127.43 ATOM 113 CD ARG G 389 -41.460 13.302 77.705 1.00134.32 ATOM 114 NE ARG G 389 -41.815 13.320 76.283 1.00138.49 ATOM 115 CZ ARG G 389 -41.093 12.781 75.302 1.00140.42 ATOM 116 NH1 ARG G 389 -39.944 12.183 75.554 1.00140.56 ATOM 117 NH2 ARG G 389 -41.516 12.860 74.049 1.00140.88 ATOM 118 N ASP G 390 -39.826 17.451 81.263 1.00113.20 ATOM 119 CA ASP G 390 -39.689 17.928 82.633 1.00113.81 ATOM 120 C ASP G 390 -39.075 19.321 82.602 1.00107.26 ATOM 121 O ASP G 390 -38.693 19.832 81.548 1.00105.00 ATOM 122 CB ASP G 390 -38.874 16.932 83.487 1.00114.71 ATOM 123 CG ASP G 390 -37.352 17.155 83.415 1.00111.08 ATOM 124 OD1 ASP G 390 -36.660 16.978 84.457 1.00106.64 ATOM 125 OD2 ASP G 390 -36.845 17.496 82.323 1.00109.14 ATOM 126 N THR G 391 -38.981 19.934 83.779 1.00112.52 ATOM 127 CA THR G 391 -38.564 21.328 83.873 1.00107.36 ATOM 128 C THR G 391 -37.098 21.502 83.488 1.00102.63 ATOM 129 O THR G 391 -36.728 22.488 82.834 1.00100.37 ATOM 130 CB THR G 391 -38.791 21.822 85.304 1.00110.11 ATOM 131 OG1 THR G 391 -37.673 22.613 85.717 1.00110.00 ATOM 132 CG2 THR G 391 -38.933 20.627 86.270 1.00112.70 ATOM 133 N TYR G 392 -36.247 20.556 83.884 1.00 94.82 ATOM 134 CA TYR G 392 -34.815 20.746 83.700 1.00 91.83 ATOM 135 C TYR G 392 -34.409 20.739 82.236 1.00 89.49 ATOM 136 O TYR G 392 -33.508 21.489 81.849 1.00 86.57 ATOM 137 CB TYR G 392 -34.029 19.683 84.449 1.00 91.12 ATOM 138 CG TYR G 392 -32.555 19.765 84.167 1.00 86.43 ATOM 139 CD1 TYR G 392 -31.806 20.862 84.568 1.00 83.79 ATOM 140 CD2 TYR G 392 -31.911 18.730 83.527 1.00 85.70 ATOM 141 CE1 TYR G 392 -30.454 20.924 84.332 1.00 80.64 ATOM 142 CE2 TYR G 392 -30.558 18.776 83.287 1.00 82.50 ATOM 143 CZ TYR G 392 -29.829 19.872 83.686 1.00 80.01 ATOM 144 OH TYR G 392 -28.477 19.909 83.405 1.00 77.18 ATOM 145 N LYS G 393 -35.009 19.870 81.415 1.00 93.80 ATOM 146 CA LYS G 393 -34.598 19.832 80.015 1.00 92.03 ATOM 147 C LYS G 393 -34.833 21.183 79.345 1.00 89.10 ATOM 148 O LYS G 393 -34.057 21.592 78.466 1.00 86.72 ATOM 149 CB LYS G 393 -35.316 18.708 79.254 1.00 96.77 ATOM 150 CG LYS G 393 -34.467 17.417 79.088 1.00 99.64 ATOM 151 CD LYS G 393 -35.331 16.170 78.849 1.00106.98 ATOM 152 CE LYS G 393 -36.069 15.697 80.077 1.00110.99 ATOM 153 NZ LYS G 393 -36.816 14.413 79.862 1.00116.96 ATOM 154 N LEU G 394 -35.822 21.935 79.830 1.00 90.74 ATOM 155 CA LEU G 394 -36.051 23.285 79.327 1.00 90.47 ATOM 156 C LEU G 394 -34.997 24.271 79.827 1.00 87.25 ATOM 157 O LEU G 394 -34.540 25.126 79.065 1.00 85.79 ATOM 158 CB LEU G 394 -37.452 23.756 79.726 1.00 94.17 ATOM 159 CG LEU G 394 -37.922 25.173 79.389 1.00 94.92 ATOM 160 CD1 LEU G 394 -39.426 25.181 79.492 1.00 99.43 ATOM 161 CD2 LEU G 394 -37.354 26.233 80.326 1.00 92.97 ATOM 162 N LYS G 395 -34.649 24.227 81.121 1.00 86.76 ATOM 163 CA LYS G 395 -33.591 25.118 81.606 1.00 83.61 ATOM 164 C LYS G 395 -32.291 24.874 80.847 1.00 80.58 ATOM 165 O LYS G 395 -31.516 25.812 80.614 1.00 78.58 ATOM 166 CB LYS G 395 -33.354 24.898 83.105 1.00 83.53 ATOM 167 CG LYS G 395 -32.587 25.994 83.883 1.00 81.52 ATOM 168 CD LYS G 395 -31.972 25.403 85.159 1.00 80.96 ATOM 169 CE LYS G 395 -33.030 25.081 86.263 1.00 86.48 ATOM 170 NZ LYS G 395 -32.480 24.225 87.425 1.00 84.32 ATOM 171 N ARG G 396 -32.043 23.618 80.464 1.00 80.80 ATOM 172 CA ARG G 396 -30.853 23.254 79.705 1.00 78.31 ATOM 173 C ARG G 396 -30.949 23.702 78.256 1.00 78.99 ATOM 174 O ARG G 396 -29.939 24.033 77.619 1.00 78.80 ATOM 175 CB ARG G 396 -30.684 21.742 79.757 1.00 78.81 ATOM 176 CG ARG G 396 -29.402 21.222 79.158 1.00 76.46 ATOM 177 CD ARG G 396 -29.326 19.693 79.232 1.00 77.47 ATOM 178 NE ARG G 396 -30.253 19.063 78.305 1.00 79.68 ATOM 179 CZ ARG G 396 -30.415 17.752 78.160 1.00 81.23 ATOM 180 NH1 ARG G 396 -29.722 16.893 78.884 1.00 80.94 ATOM 181 NH2 ARG G 396 -31.287 17.304 77.269 1.00 84.67 ATOM 182 N HIS G 397 -32.152 23.690 77.712 1.00 80.68 ATOM 183 CA HIS G 397 -32.349 24.194 76.375 1.00 81.24 ATOM 184 C HIS G 397 -32.175 25.708 76.330 1.00 80.70 ATOM 185 O HIS G 397 -31.691 26.256 75.330 1.00 80.08 ATOM 186 CB HIS G 397 -33.741 23.762 75.932 1.00 84.72 ATOM 187 CG HIS G 397 -34.231 24.452 74.716 1.00 86.24 ATOM 188 ND1 HIS G 397 -33.723 24.193 73.464 1.00 85.63 ATOM 189 CD2 HIS G 397 -35.176 25.401 74.557 1.00 88.64 ATOM 190 CE1 HIS G 397 -34.341 24.954 72.580 1.00 87.67 ATOM 191 NE2 HIS G 397 -35.231 25.694 73.218 1.00 89.57 ATOM 192 N MET G 398 -32.559 26.395 77.407 1.00 85.17 ATOM 193 CA MET G 398 -32.485 27.855 77.445 1.00 85.11 ATOM 194 C MET G 398 -31.067 28.357 77.265 1.00 82.26 ATOM 195 O MET G 398 -30.863 29.478 76.787 1.00 82.45 ATOM 196 CB MET G 398 -33.021 28.395 78.768 1.00 85.98 ATOM 197 CG MET G 398 -34.479 28.716 78.824 1.00 92.00 ATOM 198 SD MET G 398 -35.088 29.403 77.287 1.00 99.40 ATOM 199 CE MET G 398 -36.841 29.104 77.562 1.00101.97 ATOM 200 N ARG G 399 -30.084 27.556 77.685 1.00 81.53 ATOM 201 CA ARG G 399 -28.688 27.941 77.539 1.00 79.07 ATOM 202 C ARG G 399 -28.368 28.244 76.083 1.00 79.25 ATOM 203 O ARG G 399 -27.507 29.084 75.791 1.00 78.47 ATOM 204 CB ARG G 399 -27.786 26.831 78.055 1.00 77.19 ATOM 205 CG ARG G 399 -28.085 26.305 79.481 1.00 77.44 ATOM 206 CD ARG G 399 -26.762 25.869 80.060 1.00 75.28 ATOM 207 NE ARG G 399 -26.683 24.496 80.546 1.00 75.48 ATOM 208 CZ ARG G 399 -27.185 24.088 81.699 1.00 76.63 ATOM 209 NH1 ARG G 399 -27.806 24.972 82.475 1.00 77.74 ATOM 210 NH2 ARG G 399 -27.057 22.810 82.077 1.00 77.19 ATOM 211 N THR G 400 -29.044 27.564 75.155 1.00 81.17 ATOM 212 CA THR G 400 -28.797 27.805 73.743 1.00 81.72 ATOM 213 C THR G 400 -29.311 29.173 73.292 1.00 83.69 ATOM 214 O THR G 400 -28.782 29.738 72.331 1.00 84.49 ATOM 215 CB THR G 400 -29.399 26.671 72.922 1.00 83.00 ATOM 216 OG1 THR G 400 -30.834 26.712 72.982 1.00 85.77 ATOM 217 CG2 THR G 400 -28.885 25.334 73.430 1.00 81.52 ATOM 218 N HIS G 401 -30.344 29.715 73.945 1.00 79.45 ATOM 219 CA HIS G 401 -30.769 31.077 73.646 1.00 81.47 ATOM 220 C HIS G 401 -29.913 32.096 74.376 1.00 80.02 ATOM 221 O HIS G 401 -29.495 33.102 73.800 1.00 80.76 ATOM 222 CB HIS G 401 -32.235 31.273 74.017 1.00 84.30 ATOM 223 CG HIS G 401 -33.174 30.479 73.172 1.00 86.54 ATOM 224 ND1 HIS G 401 -33.192 30.568 71.797 1.00 88.00 ATOM 225 CD2 HIS G 401 -34.104 29.552 73.500 1.00 87.84 ATOM 226 CE1 HIS G 401 -34.106 29.745 71.315 1.00 90.01 ATOM 227 NE2 HIS G 401 -34.670 29.112 72.328 1.00 89.99 ATOM 228 N SER G 402 -29.638 31.845 75.649 1.00 88.33 ATOM 229 CA SER G 402 -28.853 32.792 76.426 1.00 87.32 ATOM 230 C SER G 402 -27.414 32.851 75.937 1.00 87.43 ATOM 231 O SER G 402 -26.765 33.901 76.029 1.00 89.75 ATOM 232 CB SER G 402 -28.908 32.410 77.897 1.00 86.60 ATOM 233 OG SER G 402 -28.316 31.140 78.084 1.00 87.58 ATOM 234 N GLY G 403 -26.920 31.766 75.361 1.00 91.73 ATOM 235 CA GLY G 403 -25.517 31.692 75.038 1.00 89.54 ATOM 236 C GLY G 403 -24.638 31.411 76.226 1.00 92.94 ATOM 237 O GLY G 403 -23.424 31.598 76.134 1.00 85.28 ATOM 238 N GLU G 404 -25.221 30.977 77.341 1.00 67.01 ATOM 239 CA GLU G 404 -24.459 30.657 78.533 1.00 66.30 ATOM 240 C GLU G 404 -23.669 29.390 78.290 1.00 74.95 ATOM 241 O GLU G 404 -24.123 28.480 77.596 1.00 84.25 ATOM 242 CB GLU G 404 -25.388 30.444 79.725 1.00 65.08 ATOM 243 CG GLU G 404 -24.695 30.391 81.087 1.00 73.03 ATOM 244 CD GLU G 404 -25.652 29.936 82.194 1.00 77.29 ATOM 245 OE1 GLU G 404 -26.805 29.596 81.838 1.00 83.60 ATOM 246 OE2 GLU G 404 -25.273 29.922 83.402 1.00 83.68 ATOM 247 ZN ZN G 503 -36.104 27.442 72.397 1.00 87.08 TER